FvH4_5g30820

Ammonium transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016351
Physical Location & Seq
Reverse (-)
21691607 .. 21693266
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30820.t1

Sequence Viewer

Length: 1407 bp
ATGGAGCTCCCTGTGGGACTTCAGTTCGATGAGGCTAGCCCCGAATGGTTTAGTAAGGCCGACAACGCGTGGCAGCTCACGGCAGCTACGCTAGTGGGCATGCAGAGTGTTCCCGGCCTCATCATCTTGTATGGAAGCATAGTCAAGAAGAAGTGGGCTGTCAACTCGGCCTTCATGGCCTTGTATGCATTTGCAGCCGTCTTGGTTTGTTGGGTTGGTTGGGGCTACCAAATGTCCTTCGGCACCGAACTCTTCTCCTTTCTCGGACGACCTAACGTGGCCTTGGATGAGAAGTACCTATTTACACAAGCATTCGGCGGGAAACTGCCGAACGCCACCATGATCTATTTTCAGTTTGTGTTTGCTGCAATCACGTTGATTTTGATTGCCGGAGCGTTGTTGGGAAGGATGAACTTCCATGCATGGATGTTGTTCGTGCCGCTTTGGGTTACGTTTTCGTATCCGATAACTGCTTATAGTATTTGGAATCCAAATGGATGGTTGGCAAGCAAGGGTCTTATTGATTATTCTGGAGGTTATGTCATCCACCTCGCTTCAGGAGTTGCTGGTTTCACCGCAGCTTATTGGGTTGGACCTAGAGCAACTGTTGACAAGGAGAGGTTCCCTCCAAACAACATCTTGCTTATGCTGGCAGGAGCTGGATTACTTTGGATGGGATGGAGTGGATTTAACGGTGGAGATCCTTACAATGTGAGCATGGACGCATCTCTGGCTGTCCTAAACACCCATGTATGCACTGCCACTAGCTTGCTGACATGGCTCGTTCTTGACATTATTTTCTTTGGAAAGCCCTCTGTGATTGGAGCTACACAAGGCATGATTACTGGTTTAGTGTGTATAACTCCTGCTGCTGGAGTGGTGCAAGGTTGGGCAGCAATCATAATGGGAATGATGTCTGGAAGCATCCCATGGTATACAATGATGATCCTCCATAAGCAAATCAAGCTCCTGAAACATGTAGACGACACCATGGCTGTGTTCCACACCCACGCTGTGGCCGGAAGCCTAGGCGGTATCCTCACCGGCTTCTTTTCCAGTCCCAAATTGTGTCGTCTTTTCTATCTAGTGGATAATTGGCAACACTATATTGGCCTTGCCTATGGCATCCACGACGGCCGAACTATGGCAGGGCTGAAGCAAATGGGAATTCAACTGCTTGGAATTGTGTTTGTGGTTGTCGTAAACGTTGTCATAACCAGCTTAATCTGCTTGTTGCTAAGGCTCATCGTTCCACTCAGGATGACAGAAGACGACTTGAAAATAGGGGATGATGCAGTTCATGGGGAGGAAGCTTATGCATTGTGGGGAGATGGGGAAAAGTTTAATGGTTCTAAGCACAACTCAGTTTATGGCATGGAAGACTTTGCGGTGCCAAGTAAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ammonium_transp

Protein Analysis

469

Amino Acids

51.11

Weight (kDa)

6.4

Isoelectric Point (pI)

26.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ammonium_transp PF00909 23 - 439 1e-81 Ammonium Transporter Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30820
malus_domestica MD11G1277400.v1.1
prunus_persica Prupe.8G233700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0262941
rosa_laevigata RLG00000014406
rosa_multiflora Rmu_sc0000596.1_g000063 Rmu_sc0006493.1_g000013
rosa_roxburghii Rroxscaffold_177G00434070 Rroxscaffold_7G00204870
rosa_rugosa Rorug06G0001700
rosa_samantha Rh6AG121000 Rh6BG114700 Rh6CG113100 Rh6DG102400
rosa_wichuraiana Rw6G010390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 242, 1390
AccB7I CCANNNNNTGG 1 cut(s) 1015
AccI GTMKAC 2 cut(s) 935, 981
AccII CGCG 1 cut(s) 68
AciI CCGC 5 cut(s) 318, 440, 576, 1032, 1388
AclI AACGTT 1 cut(s) 1206
AclWI GGATC 2 cut(s) 695, 940
AcoI YGGCCR 2 cut(s) 1017, 1135
AcsI RAATTY 1 cut(s) 1167
AcuI CTGAAG 3 cut(s) 5, 540, 1175
AdeI CACNNNGTG 1 cut(s) 1015
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 3 cut(s) 872, 1015, 1144
AflIII ACRYGT 2 cut(s) 66, 976
AgsI TTSAA 2 cut(s) 1172, 1279
Alw21I GWGCWC 1 cut(s) 9
AlwI GGATC 2 cut(s) 695, 940
AlwNI CAGNNNCTG 1 cut(s) 659
AoxI GGCC 8 cut(s) 57, 115, 168, 177, 279, 1017, 1111, 1135
ApeKI GCWGC 7 cut(s) 73, 83, 194, 365, 578, 869, 893
ApoI RAATTY 1 cut(s) 1167
AspA2I CCTAGG 1 cut(s) 1027
AspS9I GGNCC 1 cut(s) 593
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 2 cut(s) 565, 1033
AsuNHI GCTAGC 1 cut(s) 35
AvaII GGWCC 1 cut(s) 593
AvrII CCTAGG 1 cut(s) 1027
BanI GGYRCC 2 cut(s) 242, 1390
BanII GRGCYC 1 cut(s) 9
BbsI GAAGAC 2 cut(s) 1275, 1386
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 7 cut(s) 85, 95, 206, 352, 590, 856, 905
BccI CCATC 4 cut(s) 492, 667, 672, 1325
BceAI ACGGC 3 cut(s) 96, 182, 1150
BciVI GTATCC 2 cut(s) 471, 1046
BcnI CCSGG 1 cut(s) 114
BfaI CTAG 6 cut(s) 36, 92, 597, 765, 1028, 1085
BfuI GTATCC 2 cut(s) 471, 1046
BglI GCCNNNNNGGC 1 cut(s) 176
BisI GCNGC 8 cut(s) 74, 84, 195, 366, 440, 579, 870, 894
BlnI CCTAGG 1 cut(s) 1027
BlsI GCNGC 8 cut(s) 75, 85, 196, 367, 441, 580, 871, 895
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 593
BmgT120I GGNCC 1 cut(s) 593
BmiI GGNNCC 3 cut(s) 244, 623, 1392
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 4 cut(s) 734, 933, 1134, 1282
BmtI GCTAGC 1 cut(s) 39
BpiI GAAGAC 2 cut(s) 1275, 1386
BplI GAGNNNNNCTC 2 cut(s) 610, 642
BpmI CTGGAG 2 cut(s) 552, 894
Bpu10I CCTNAGC 1 cut(s) 1238
BpuMI CCSGG 1 cut(s) 114
BsaJI CCNNGG 4 cut(s) 282, 929, 990, 1027
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 3 cut(s) 872, 1015, 1144
Bse118I RCCGGY 1 cut(s) 1043
Bse1I ACTGG 2 cut(s) 850, 1056
BseDI CCNNGG 4 cut(s) 282, 929, 990, 1027
BseLI CCNNNNNNNGG 3 cut(s) 872, 1015, 1144
BseMII CTCAG 2 cut(s) 1270, 1377
BseNI ACTGG 2 cut(s) 850, 1056
BseX3I CGGCCG 1 cut(s) 1135
BseXI GCAGC 7 cut(s) 85, 95, 206, 352, 590, 856, 905
Bsh1236I CGCG 1 cut(s) 68
Bsh1285I CGRYCG 1 cut(s) 1138
BshFI GGCC 8 cut(s) 59, 117, 170, 179, 281, 1019, 1113, 1137
BshNI GGYRCC 2 cut(s) 242, 1390
BsiEI CGRYCG 1 cut(s) 1138
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 4 cut(s) 114, 390, 1020, 1044
BslFI GGGAC 2 cut(s) 30, 1044
BslI CCNNNNNNNGG 3 cut(s) 872, 1015, 1144
BsmFI GGGAC 2 cut(s) 30, 1044
BsmI GAATGC 1 cut(s) 311
BsnI GGCC 8 cut(s) 59, 117, 170, 179, 281, 1019, 1113, 1137
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 3 cut(s) 342, 700, 945
Bsp19I CCATGG 2 cut(s) 929, 990
BspACI CCGC 5 cut(s) 318, 440, 576, 1032, 1388
BspANI GGCC 8 cut(s) 59, 117, 170, 179, 281, 1019, 1113, 1137
BspCNI CTCAG 2 cut(s) 1269, 1376
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 3 cut(s) 244, 623, 1392
BspOI GCTAGC 1 cut(s) 39
BspPI GGATC 2 cut(s) 695, 940
BspT107I GGYRCC 2 cut(s) 242, 1390
BsrFI RCCGGY 1 cut(s) 1043
BsrI ACTGG 2 cut(s) 850, 1056
BssAI RCCGGY 1 cut(s) 1043
BssECI CCNNGG 4 cut(s) 282, 929, 990, 1027
BssMI GATC 3 cut(s) 342, 700, 945
BssNAI GTATAC 1 cut(s) 936
BssT1I CCWWGG 4 cut(s) 282, 929, 990, 1027
Bst1107I GTATAC 1 cut(s) 936
Bst4CI ACNGT 2 cut(s) 607, 695
Bst6I CTCTTC 1 cut(s) 257
BstC8I GCNNGC 5 cut(s) 37, 101, 508, 651, 770
BstDEI CTNAG 4 cut(s) 1238, 1256, 1353, 1363
BstDSI CCRYGG 2 cut(s) 929, 990
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 3 cut(s) 345, 703, 948
BstMBI GATC 3 cut(s) 342, 700, 945
BstMCI CGRYCG 1 cut(s) 1138
BstMWI GCNNNNNNNGC 8 cut(s) 65, 176, 185, 194, 731, 778, 964, 1227
BstNSI RCATGY 2 cut(s) 103, 980
BstSCI CCNGG 1 cut(s) 112
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 7 cut(s) 85, 95, 206, 352, 590, 856, 905
BstV2I GAAGAC 2 cut(s) 1275, 1386
BstX2I RGATCY 1 cut(s) 700
BstXI CCANNNNNNTGG 1 cut(s) 498
BstYI RGATCY 1 cut(s) 700
BstZ17I GTATAC 1 cut(s) 936
BstZI CGGCCG 1 cut(s) 1135
BsuI GTATCC 2 cut(s) 471, 1046
BsuRI GGCC 8 cut(s) 59, 117, 170, 179, 281, 1019, 1113, 1137
BtgI CCRYGG 2 cut(s) 929, 990
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 1 cut(s) 756
Cac8I GCNNGC 5 cut(s) 37, 101, 508, 651, 770
CaiI CAGNNNCTG 1 cut(s) 659
Cfr10I RCCGGY 1 cut(s) 1043
Cfr13I GGNCC 1 cut(s) 593
CseI GACGC 1 cut(s) 731
Csp6I GTAC 1 cut(s) 295
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 4 cut(s) 1238, 1256, 1353, 1363
DpnI GATC 3 cut(s) 344, 702, 947
DpnII GATC 3 cut(s) 342, 700, 945
DraIII CACNNNGTG 1 cut(s) 1015
EaeI YGGCCR 2 cut(s) 1017, 1135
EagI CGGCCG 1 cut(s) 1135
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 7
EclXI CGGCCG 1 cut(s) 1135
Eco130I CCWWGG 4 cut(s) 282, 929, 990, 1027
Eco24I GRGCYC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 593
Eco52I CGGCCG 1 cut(s) 1135
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 3 cut(s) 5, 540, 1175
EcoICRI GAGCTC 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 1167
EcoT14I CCWWGG 4 cut(s) 282, 929, 990, 1027
EcoT22I ATGCAT 3 cut(s) 190, 424, 1321
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 4 cut(s) 282, 929, 990, 1027
FalI AAGNNNNNCTT 1 cut(s) 1387
FaqI GGGAC 2 cut(s) 30, 1044
FauI CCCGC 1 cut(s) 311
FblI GTMKAC 2 cut(s) 935, 981
Fnu4HI GCNGC 8 cut(s) 74, 84, 195, 366, 440, 579, 870, 894
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 8 cut(s) 74, 84, 195, 366, 440, 579, 870, 894
FspBI CTAG 6 cut(s) 36, 92, 597, 765, 1028, 1085
GluI GCNGC 8 cut(s) 74, 84, 195, 366, 440, 579, 870, 894
GsuI CTGGAG 2 cut(s) 552, 894
HaeIII GGCC 8 cut(s) 59, 117, 170, 179, 281, 1019, 1113, 1137
HapII CCGG 4 cut(s) 114, 390, 1020, 1044
HgaI GACGC 1 cut(s) 731
HincII GTYRAC 2 cut(s) 163, 610
HindII GTYRAC 2 cut(s) 163, 610
HindIII AAGCTT 2 cut(s) 1311, 1401
HinfI GANTC 1 cut(s) 487
HpaII CCGG 4 cut(s) 114, 390, 1020, 1044
HphI GGTGA 2 cut(s) 565, 1033
Hpy166II GTNNAC 5 cut(s) 163, 610, 936, 982, 1204
Hpy188I TCNGA 2 cut(s) 266, 465
Hpy188III TCNNGA 7 cut(s) 145, 531, 558, 788, 918, 970, 1258
Hpy8I GTNNAC 5 cut(s) 163, 610, 936, 982, 1204
Hpy99I CGWCG 1 cut(s) 1136
HpyAV CCTTC 3 cut(s) 181, 247, 399
HpyCH4III ACNGT 2 cut(s) 607, 695
HpyCH4IV ACGT 4 cut(s) 276, 374, 452, 1206
HpyCH4V TGCA 9 cut(s) 103, 188, 194, 368, 422, 756, 883, 1295, 1319
HpyF10VI GCNNNNNNNGC 8 cut(s) 65, 176, 185, 194, 731, 778, 964, 1227
HpyF3I CTNAG 4 cut(s) 1238, 1256, 1353, 1363
HpySE526I ACGT 4 cut(s) 276, 374, 452, 1206
Kzo9I GATC 3 cut(s) 342, 700, 945
LmnI GCTCC 6 cut(s) 4, 12, 392, 656, 824, 972
Lsp1109I GCAGC 7 cut(s) 85, 95, 206, 352, 590, 856, 905
LweI GCATC 4 cut(s) 734, 933, 1134, 1282
MaeI CTAG 6 cut(s) 36, 92, 597, 765, 1028, 1085
MaeII ACGT 4 cut(s) 276, 374, 452, 1206
MaeIII GTNAC 1 cut(s) 448
MalI GATC 3 cut(s) 344, 702, 947
MboI GATC 3 cut(s) 342, 700, 945
MboII GAAGA 4 cut(s) 160, 244, 1280, 1391
MflI RGATCY 1 cut(s) 700
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 4 cut(s) 1064, 1093, 1167, 1182
MluI ACGCGT 1 cut(s) 66
MmeI TCCRAC 1 cut(s) 571
Mph1103I ATGCAT 3 cut(s) 190, 424, 1321
MseI TTAA 4 cut(s) 690, 1223, 1344, 1405
MslI CAYNNNNRTG 1 cut(s) 995
MspI CCGG 4 cut(s) 114, 390, 1020, 1044
MspR9I CCNGG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 311
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 8 cut(s) 65, 176, 185, 194, 731, 778, 964, 1227
NciI CCSGG 1 cut(s) 114
NcoI CCATGG 2 cut(s) 929, 990
NdeII GATC 3 cut(s) 342, 700, 945
NheI GCTAGC 1 cut(s) 35
NlaIV GGNNCC 3 cut(s) 244, 623, 1392
NmeAIII GCCGAG 1 cut(s) 146
NsiI ATGCAT 3 cut(s) 190, 424, 1321
NspI RCATGY 2 cut(s) 103, 980
PaeI GCATGC 1 cut(s) 103
PciI ACATGT 1 cut(s) 976
PctI GAATGC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 487
PflMI CCANNNNNTGG 1 cut(s) 1015
PkrI GCNGC 8 cut(s) 75, 85, 196, 367, 441, 580, 871, 895
PscI ACATGT 1 cut(s) 976
Psp124BI GAGCTC 1 cut(s) 9
Psp1406I AACGTT 1 cut(s) 1206
PspN4I GGNNCC 3 cut(s) 244, 623, 1392
PspPI GGNCC 1 cut(s) 593
PstNI CAGNNNCTG 1 cut(s) 659
PsuI RGATCY 1 cut(s) 700
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
RseI CAYNNNNRTG 1 cut(s) 995
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 4 cut(s) 690, 1223, 1344, 1405
SatI GCNGC 8 cut(s) 74, 84, 195, 366, 440, 579, 870, 894
Sau3AI GATC 3 cut(s) 342, 700, 945
Sau96I GGNCC 1 cut(s) 593
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 4 cut(s) 734, 933, 1134, 1282
SfiI GGCCNNNNNGGCC 1 cut(s) 176
SinI GGWCC 1 cut(s) 593
SmiMI CAYNNNNRTG 1 cut(s) 995
SphI GCATGC 1 cut(s) 103
Sse9I AATT 4 cut(s) 1064, 1093, 1167, 1182
SsiI CCGC 5 cut(s) 318, 440, 576, 1032, 1388
SspMI CTAG 6 cut(s) 36, 92, 597, 765, 1028, 1085
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 4 cut(s) 282, 929, 990, 1027
TaaI ACNGT 2 cut(s) 607, 695
TaiI ACGT 4 cut(s) 279, 377, 455, 1209
TaqI TCGA 1 cut(s) 27
TasI AATT 4 cut(s) 1064, 1093, 1167, 1182
TauI GCSGC 1 cut(s) 442
TfiI GAWTC 1 cut(s) 487
Tru1I TTAA 4 cut(s) 690, 1223, 1344, 1405
Tru9I TTAA 4 cut(s) 690, 1223, 1344, 1405
TscAI CASTG 1 cut(s) 763
TseI GCWGC 7 cut(s) 73, 83, 194, 365, 578, 869, 893
TspDTI ATGAA 3 cut(s) 163, 425, 1289
TspRI CASTG 1 cut(s) 763
Van91I CCANNNNNTGG 1 cut(s) 1015
VpaK11BI GGWCC 1 cut(s) 593
XapI RAATTY 1 cut(s) 1167
XceI RCATGY 2 cut(s) 103, 980
XmaJI CCTAGG 1 cut(s) 1027
XmiI GTMKAC 2 cut(s) 935, 981
XspI CTAG 6 cut(s) 36, 92, 597, 765, 1028, 1085
Zsp2I ATGCAT 3 cut(s) 190, 424, 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.