RLG00000014406

Ammonium transporter

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
52804986 .. 52807442
2457 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014406

Sequence Viewer

Length: 1407 bp
ATGGAGCTACCCCCGGGCCTTGCATCCGACCAAGCTAGCCCCGAATGGTTTAGCAAGGCTGACAACGCGTGGCAGCTCACTGCTGCTACACTTGTAGGCATGCAGAGTGTGCCCGGCCTTATCATCTTGTATGGAAGCATAGTCAAGAAGAAGTGGGCAGTCAACTCTGCCTTCATGGCCATGTACGCCTTTGCAACTGTCTTGGTTTGTTGGGTGGGTTGGGGCTACCAGATGTCTTTCGGTACCGAAATGTTCACCTTCCTGGGACGCCCCAACGTGGCCTTGGATCAGAAGTACCTATTTACACAAGCATTCTCAGGGAAATTGCCGAACGCGACCATGATTTATTTTCAGTTTGTGTTTGCAGCAATCACGTTAATTTTGATTGCCGGGGCGTTATTGGGGCGGATGAACTTCCATGCGTGGATGTTGTTTGTACCGCTTTGGGTGACATTTTCGTATCCCATAACCGCTTATAGTATTTGGAATCCACATGGATGGTTGGCAAAGATGGGTCTTATTGATTATTCTGGAGGTTATGTCATTCACCTTTCTTCCGGAGTTGCTGGTTTCACTGCAGCTTATTGGGTCGGACCTAGAGCAACTAGTGACAGGGAGAGATTCCCTCCAAACAACATCCTGCTTATGTTGGCAGGAGCTGGACTACTTTGGATGGGATGGACTGGATTCAACGGTGGAGATCCCTACAGTGTGAGCATGGACGCATCTCTGGCCGTCCTCAACACCCATGTATGTACTGCCTCTAGCTTGCTGACGTGGCTCGTCCTTGATATTATTTTCTTTGGGAAGCCCTCTGTGATTGGAGCCACCCAGGGCATGATCACTGGCTTGGTTTGCATAACTCCTGCTGCGGGTGTGGTGCAAGGTTGGGCAGCAATCATAATGGGAATCATGTCCGGAAGTATCCCATGGTACACAATGATGGTCCTCCACAAGCAAAGCAAGCTTCTGAAGCATGTAGACGACACCATGGCCGTGTTCCACACCCACGCTGTGGCAGGAAGCTTAGGTGGTCTCCTTACCGGCTTCTTTTCCAATCCCAAGCTATGTCGTCTTTTCTATCTAGTTGAGAACTGGCAACACTACATCGGTCTTGCCTATGGCATCCACGACGGCCGATTTATGGATGGGATGAAACAAATGGGAATTCAACTTCTCGGAATTGTGTTTGTGGTTGTTGTGAACGTTATCATAACCAGCTTAATCTGTCTGTTGTTGAGGCTCATCGTTCCACTTAGGATGACAGAAGATGACTTGAAAATAGGGGATGATGCAATTCACGGGGAGGAGGCTTATGCATTGTGGGGAGATGGAGAGAAGTTTGATGGATCTAAGCATAACTCAGTTTATGGCATGGATGACTTTGGTGTGGCAAGTAAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

469

Amino Acids

51.24

Weight (kDa)

6.44

Isoelectric Point (pI)

27.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ammonium_transp PF00909 23 - 439 8.2e-83 Ammonium Transporter Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016351)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 242
AccB7I CCANNNNNTGG 1 cut(s) 1015
AccI GTMKAC 1 cut(s) 981
AccII CGCG 2 cut(s) 68, 335
AccIII TCCGGA 2 cut(s) 557, 917
AciI CCGC 4 cut(s) 406, 440, 471, 872
AclI AACGTT 1 cut(s) 1206
AclWI GGATC 3 cut(s) 294, 695, 1357
AcoI YGGCCR 4 cut(s) 177, 732, 993, 1135
AcsI RAATTY 1 cut(s) 1167
AcuI CTGAAG 1 cut(s) 992
AcyI GRCGYC 1 cut(s) 268
AdeI CACNNNGTG 1 cut(s) 1015
AfaI GTAC 6 cut(s) 185, 244, 296, 438, 757, 935
AfiI CCNNNNNNNGG 4 cut(s) 277, 872, 1015, 1144
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 3 cut(s) 691, 1172, 1279
AhlI ACTAGT 1 cut(s) 605
AjiI CACGTC 1 cut(s) 777
AjnI CCWGG 2 cut(s) 261, 831
Alw26I GTCTC 1 cut(s) 1040
AlwI GGATC 3 cut(s) 294, 695, 1357
AlwNI CAGNNNCTG 1 cut(s) 659
Ama87I CYCGRG 1 cut(s) 13
Aor13HI TCCGGA 2 cut(s) 557, 917
AoxI GGCC 7 cut(s) 16, 115, 177, 279, 732, 993, 1135
ApeKI GCWGC 6 cut(s) 73, 83, 365, 578, 869, 893
ApoI RAATTY 1 cut(s) 1167
Asp718I GGTACC 1 cut(s) 242
AspS9I GGNCC 3 cut(s) 16, 593, 946
AsuC2I CCSGG 4 cut(s) 14, 15, 114, 391
AsuHPI GGTGA 3 cut(s) 247, 460, 539
AsuNHI GCTAGC 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 13
AvaII GGWCC 2 cut(s) 593, 946
BaeGI GKGCMC 1 cut(s) 114
BalI TGGCCA 1 cut(s) 179
BanI GGYRCC 1 cut(s) 242
BbvI GCAGC 6 cut(s) 70, 85, 377, 590, 856, 905
BccI CCATC 8 cut(s) 492, 505, 667, 672, 937, 1142, 1325, 1340
BceAI ACGGC 3 cut(s) 719, 980, 1150
BciT130I CCWGG 2 cut(s) 263, 833
BciVI GTATCC 2 cut(s) 471, 935
BclI TGATCA 1 cut(s) 840
BcnI CCSGG 4 cut(s) 14, 15, 114, 391
BcoDI GTCTC 1 cut(s) 1040
BcuI ACTAGT 1 cut(s) 605
BfaI CTAG 5 cut(s) 36, 597, 606, 765, 1085
BfmI CTRYAG 2 cut(s) 576, 706
BfuI GTATCC 2 cut(s) 471, 935
BglI GCCNNNNNGGC 1 cut(s) 176
BisI GCNGC 6 cut(s) 74, 84, 366, 579, 870, 894
BlsI GCNGC 6 cut(s) 75, 85, 367, 580, 871, 895
Bme1390I CCNGG 6 cut(s) 14, 15, 114, 263, 391, 833
Bme18I GGWCC 2 cut(s) 593, 946
BmeT110I CYCGRG 1 cut(s) 13
BmgBI CACGTC 1 cut(s) 777
BmgT120I GGNCC 3 cut(s) 16, 593, 946
BmiI GGNNCC 2 cut(s) 244, 826
BmrFI CCNGG 6 cut(s) 14, 15, 114, 263, 391, 833
BmsI GCATC 4 cut(s) 32, 734, 1134, 1282
BmtI GCTAGC 1 cut(s) 39
BplI GAGNNNNNCTC 2 cut(s) 610, 642
BpmI CTGGAG 1 cut(s) 552
Bpu10I CCTNAGC 1 cut(s) 1027
BpuMI CCSGG 4 cut(s) 14, 15, 114, 391
BsaHI GRCGYC 1 cut(s) 268
BsaI GGTCTC 1 cut(s) 1040
BsaJI CCNNGG 9 cut(s) 12, 13, 262, 282, 390, 831, 832, 929, 990
BsaWI WCCGGW 2 cut(s) 557, 917
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 4 cut(s) 277, 872, 1015, 1144
Bse118I RCCGGY 1 cut(s) 1043
Bse1I ACTGG 3 cut(s) 688, 850, 1100
BseAI TCCGGA 2 cut(s) 557, 917
BseBI CCWGG 2 cut(s) 263, 833
BseDI CCNNGG 9 cut(s) 12, 13, 262, 282, 390, 831, 832, 929, 990
BseLI CCNNNNNNNGG 4 cut(s) 277, 872, 1015, 1144
BseMII CTCAG 2 cut(s) 330, 1377
BseNI ACTGG 3 cut(s) 688, 850, 1100
BseRI GAGGAG 1 cut(s) 1322
BseSI GKGCMC 1 cut(s) 114
BseX3I CGGCCG 1 cut(s) 1135
BseXI GCAGC 6 cut(s) 70, 85, 377, 590, 856, 905
Bsh1236I CGCG 2 cut(s) 68, 335
Bsh1285I CGRYCG 1 cut(s) 1138
BshFI GGCC 7 cut(s) 18, 117, 179, 281, 734, 995, 1137
BshNI GGYRCC 1 cut(s) 242
BsiEI CGRYCG 1 cut(s) 1138
BsiHKCI CYCGRG 1 cut(s) 13
BsiSI CCGG 6 cut(s) 14, 114, 390, 558, 918, 1044
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 4 cut(s) 277, 872, 1015, 1144
BsmAI GTCTC 1 cut(s) 1040
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 1 cut(s) 311
BsnI GGCC 7 cut(s) 18, 117, 179, 281, 734, 995, 1137
Bso31I GGTCTC 1 cut(s) 1040
BsoBI CYCGRG 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 114
Bsp13I TCCGGA 2 cut(s) 557, 917
Bsp143I GATC 4 cut(s) 286, 700, 840, 1349
Bsp19I CCATGG 2 cut(s) 929, 990
BspACI CCGC 4 cut(s) 406, 440, 471, 872
BspANI GGCC 7 cut(s) 18, 117, 179, 281, 734, 995, 1137
BspCNI CTCAG 2 cut(s) 329, 1376
BspEI TCCGGA 2 cut(s) 557, 917
BspFNI CGCG 2 cut(s) 68, 335
BspLI GGNNCC 2 cut(s) 244, 826
BspMAI CTGCAG 1 cut(s) 580
BspOI GCTAGC 1 cut(s) 39
BspPI GGATC 3 cut(s) 294, 695, 1357
BspT107I GGYRCC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 1040
BsrFI RCCGGY 1 cut(s) 1043
BsrI ACTGG 3 cut(s) 688, 850, 1100
BssAI RCCGGY 1 cut(s) 1043
BssECI CCNNGG 9 cut(s) 12, 13, 262, 282, 390, 831, 832, 929, 990
BssMI GATC 4 cut(s) 286, 700, 840, 1349
BssNI GRCGYC 1 cut(s) 268
BssT1I CCWWGG 3 cut(s) 282, 929, 990
Bst2UI CCWGG 2 cut(s) 263, 833
Bst4CI ACNGT 3 cut(s) 199, 695, 710
BstACI GRCGYC 1 cut(s) 268
BstAPI GCANNNNNTGC 1 cut(s) 109
BstC8I GCNNGC 4 cut(s) 37, 101, 770, 965
BstDEI CTNAG 5 cut(s) 316, 1027, 1256, 1353, 1363
BstDSI CCRYGG 2 cut(s) 929, 990
BstFNI CGCG 2 cut(s) 68, 335
BstKTI GATC 4 cut(s) 289, 703, 843, 1352
BstMAI GTCTC 1 cut(s) 1040
BstMBI GATC 4 cut(s) 286, 700, 840, 1349
BstMCI CGRYCG 1 cut(s) 1138
BstNI CCWGG 2 cut(s) 263, 833
BstNSI RCATGY 2 cut(s) 103, 980
BstSCI CCNGG 6 cut(s) 12, 13, 112, 261, 389, 831
BstSFI CTRYAG 2 cut(s) 576, 706
BstSLI GKGCMC 1 cut(s) 114
BstUI CGCG 2 cut(s) 68, 335
BstV1I GCAGC 6 cut(s) 70, 85, 377, 590, 856, 905
BstX2I RGATCY 2 cut(s) 700, 1349
BstXI CCANNNNNNTGG 1 cut(s) 498
BstYI RGATCY 2 cut(s) 700, 1349
BstZI CGGCCG 1 cut(s) 1135
BsuI GTATCC 2 cut(s) 471, 935
BsuRI GGCC 7 cut(s) 18, 117, 179, 281, 734, 995, 1137
BtgI CCRYGG 2 cut(s) 929, 990
BtrI CACGTC 1 cut(s) 777
BtsI GCAGTG 2 cut(s) 78, 573
BtsIMutI CAGTG 4 cut(s) 78, 573, 715, 843
Cac8I GCNNGC 4 cut(s) 37, 101, 770, 965
CaiI CAGNNNCTG 1 cut(s) 659
Cfr10I RCCGGY 1 cut(s) 1043
Cfr13I GGNCC 3 cut(s) 16, 593, 946
Cfr9I CCCGGG 1 cut(s) 13
CseI GACGC 2 cut(s) 276, 731
Csp6I GTAC 6 cut(s) 184, 243, 295, 437, 756, 934
CviQI GTAC 6 cut(s) 184, 243, 295, 437, 756, 934
DdeI CTNAG 5 cut(s) 316, 1027, 1256, 1353, 1363
DpnI GATC 4 cut(s) 288, 702, 842, 1351
DpnII GATC 4 cut(s) 286, 700, 840, 1349
DraIII CACNNNGTG 1 cut(s) 1015
EaeI YGGCCR 4 cut(s) 177, 732, 993, 1135
EagI CGGCCG 1 cut(s) 1135
EciI GGCGGA 1 cut(s) 421
EclXI CGGCCG 1 cut(s) 1135
Eco130I CCWWGG 3 cut(s) 282, 929, 990
Eco31I GGTCTC 1 cut(s) 1040
Eco47I GGWCC 2 cut(s) 593, 946
Eco52I CGGCCG 1 cut(s) 1135
Eco57I CTGAAG 1 cut(s) 992
Eco88I CYCGRG 1 cut(s) 13
EcoRI GAATTC 1 cut(s) 1167
EcoRII CCWGG 2 cut(s) 261, 831
EcoT14I CCWWGG 3 cut(s) 282, 929, 990
EcoT22I ATGCAT 1 cut(s) 1321
ErhI CCWWGG 3 cut(s) 282, 929, 990
FalI AAGNNNNNCTT 1 cut(s) 1387
FaqI GGGAC 1 cut(s) 279
FauI CCCGC 1 cut(s) 865
FbaI TGATCA 1 cut(s) 840
FblI GTMKAC 1 cut(s) 981
Fnu4HI GCNGC 6 cut(s) 74, 84, 366, 579, 870, 894
Fsp4HI GCNGC 6 cut(s) 74, 84, 366, 579, 870, 894
FspBI CTAG 5 cut(s) 36, 597, 606, 765, 1085
GluI GCNGC 6 cut(s) 74, 84, 366, 579, 870, 894
GsuI CTGGAG 1 cut(s) 552
HaeIII GGCC 7 cut(s) 18, 117, 179, 281, 734, 995, 1137
HapII CCGG 6 cut(s) 14, 114, 390, 558, 918, 1044
HgaI GACGC 2 cut(s) 276, 731
Hin1I GRCGYC 1 cut(s) 268
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 3 cut(s) 965, 1024, 1401
HinfI GANTC 4 cut(s) 487, 621, 687, 909
HpaII CCGG 6 cut(s) 14, 114, 390, 558, 918, 1044
HphI GGTGA 3 cut(s) 247, 460, 539
Hpy166II GTNNAC 5 cut(s) 163, 255, 936, 982, 1204
Hpy188I TCNGA 5 cut(s) 28, 291, 593, 972, 1181
Hpy188III TCNNGA 4 cut(s) 145, 531, 558, 918
Hpy8I GTNNAC 5 cut(s) 163, 255, 936, 982, 1204
Hpy99I CGWCG 1 cut(s) 1136
HpyAV CCTTC 2 cut(s) 181, 268
HpyCH4III ACNGT 3 cut(s) 199, 695, 710
HpyCH4IV ACGT 4 cut(s) 276, 374, 776, 1206
HpyCH4V TGCA 9 cut(s) 23, 103, 194, 365, 578, 858, 883, 1295, 1319
HpyF3I CTNAG 5 cut(s) 316, 1027, 1256, 1353, 1363
HpySE526I ACGT 4 cut(s) 276, 374, 776, 1206
Hsp92I GRCGYC 1 cut(s) 268
Kpn2I TCCGGA 2 cut(s) 557, 917
KpnI GGTACC 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 840
Kzo9I GATC 4 cut(s) 286, 700, 840, 1349
LmnI GCTCC 3 cut(s) 4, 656, 824
Lsp1109I GCAGC 6 cut(s) 70, 85, 377, 590, 856, 905
LweI GCATC 4 cut(s) 32, 734, 1134, 1282
MaeI CTAG 5 cut(s) 36, 597, 606, 765, 1085
MaeII ACGT 4 cut(s) 276, 374, 776, 1206
MaeIII GTNAC 2 cut(s) 448, 608
MalI GATC 4 cut(s) 288, 702, 842, 1351
MboI GATC 4 cut(s) 286, 700, 840, 1349
MboII GAAGA 3 cut(s) 160, 546, 1280
MflI RGATCY 2 cut(s) 700, 1349
MhlI GDGCHC 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 179
MluCI AATT 5 cut(s) 323, 378, 1167, 1182, 1296
MluI ACGCGT 1 cut(s) 66
MluNI TGGCCA 1 cut(s) 179
MmeI TCCRAC 2 cut(s) 51, 571
MnlI CCTC 9 cut(s) 527, 636, 749, 772, 823, 959, 1233, 1300, 1303
Mox20I TGGCCA 1 cut(s) 179
Mph1103I ATGCAT 1 cut(s) 1321
MroI TCCGGA 2 cut(s) 557, 917
MscI TGGCCA 1 cut(s) 179
MseI TTAA 3 cut(s) 377, 1223, 1405
MslI CAYNNNNRTG 4 cut(s) 179, 496, 941, 995
Msp20I TGGCCA 1 cut(s) 179
MspI CCGG 6 cut(s) 14, 114, 390, 558, 918, 1044
MspR9I CCNGG 6 cut(s) 14, 15, 114, 263, 391, 833
Mva1269I GAATGC 1 cut(s) 311
MvaI CCWGG 2 cut(s) 263, 833
MvnI CGCG 2 cut(s) 68, 335
NciI CCSGG 4 cut(s) 14, 15, 114, 391
NcoI CCATGG 2 cut(s) 929, 990
NdeII GATC 4 cut(s) 286, 700, 840, 1349
NheI GCTAGC 1 cut(s) 35
NlaIV GGNNCC 2 cut(s) 244, 826
NmuCI GTSAC 2 cut(s) 448, 608
NsiI ATGCAT 1 cut(s) 1321
NspI RCATGY 2 cut(s) 103, 980
PaeI GCATGC 1 cut(s) 103
PasI CCCWGGG 1 cut(s) 832
PctI GAATGC 1 cut(s) 311
PfeI GAWTC 4 cut(s) 487, 621, 687, 909
PflMI CCANNNNNTGG 1 cut(s) 1015
PkrI GCNGC 6 cut(s) 75, 85, 367, 580, 871, 895
Psp1406I AACGTT 1 cut(s) 1206
Psp6I CCWGG 2 cut(s) 261, 831
PspGI CCWGG 2 cut(s) 261, 831
PspN4I GGNNCC 2 cut(s) 244, 826
PspPI GGNCC 3 cut(s) 16, 593, 946
PstI CTGCAG 1 cut(s) 580
PstNI CAGNNNCTG 1 cut(s) 659
PsuI RGATCY 2 cut(s) 700, 1349
RsaI GTAC 6 cut(s) 185, 244, 296, 438, 757, 935
RsaNI GTAC 6 cut(s) 184, 243, 295, 437, 756, 934
RseI CAYNNNNRTG 4 cut(s) 179, 496, 941, 995
SaqAI TTAA 3 cut(s) 377, 1223, 1405
SatI GCNGC 6 cut(s) 74, 84, 366, 579, 870, 894
Sau3AI GATC 4 cut(s) 286, 700, 840, 1349
Sau96I GGNCC 3 cut(s) 16, 593, 946
ScrFI CCNGG 6 cut(s) 14, 15, 114, 263, 391, 833
SduI GDGCHC 1 cut(s) 114
SfaNI GCATC 4 cut(s) 32, 734, 1134, 1282
SfcI CTRYAG 2 cut(s) 576, 706
SinI GGWCC 2 cut(s) 593, 946
SmaI CCCGGG 1 cut(s) 15
SmiMI CAYNNNNRTG 4 cut(s) 179, 496, 941, 995
SpeI ACTAGT 1 cut(s) 605
SphI GCATGC 1 cut(s) 103
Sse9I AATT 5 cut(s) 323, 378, 1167, 1182, 1296
SsiI CCGC 4 cut(s) 406, 440, 471, 872
SspMI CTAG 5 cut(s) 36, 597, 606, 765, 1085
StyD4I CCNGG 6 cut(s) 12, 13, 112, 261, 389, 831
StyI CCWWGG 3 cut(s) 282, 929, 990
TaaI ACNGT 3 cut(s) 199, 695, 710
TaiI ACGT 4 cut(s) 279, 377, 779, 1209
TaqII GACCGA 1 cut(s) 1100
TasI AATT 5 cut(s) 323, 378, 1167, 1182, 1296
TatI WGTACW 1 cut(s) 755
TfiI GAWTC 4 cut(s) 487, 621, 687, 909
Tru1I TTAA 3 cut(s) 377, 1223, 1405
Tru9I TTAA 3 cut(s) 377, 1223, 1405
TscAI CASTG 4 cut(s) 85, 580, 715, 850
TseFI GTSAC 2 cut(s) 448, 608
TseI GCWGC 6 cut(s) 73, 83, 365, 578, 869, 893
Tsp45I GTSAC 2 cut(s) 448, 608
TspDTI ATGAA 3 cut(s) 163, 425, 1169
TspMI CCCGGG 1 cut(s) 13
TspRI CASTG 4 cut(s) 85, 580, 715, 850
Van91I CCANNNNNTGG 1 cut(s) 1015
VpaK11BI GGWCC 2 cut(s) 593, 946
XapI RAATTY 1 cut(s) 1167
XceI RCATGY 2 cut(s) 103, 980
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XmaI CCCGGG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 981
XspI CTAG 5 cut(s) 36, 597, 606, 765, 1085
Zsp2I ATGCAT 1 cut(s) 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.