MD11G1277400.v1.1

Ammonium transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
39457172 .. 39459936
2765 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1277400.v1.1.491

Sequence Viewer

Length: 1416 bp
ATGGCGCTCCCATTGAACCTCCAACCTGACGAGGCGAGCCCTGATTGGCTCAGCAAGGGTGACAATGCTTGGCAACTCACGGCTGCCACGCTCGTTGGCATGCAGAGCGTGCCAGGGCTTGTCATTCTCTACGGAAGCATAGTGAAAAAGAAGTGGGCGGTGAACTCCGCCTTCATGGCTCTGTACGCCTTCGCAGCAGTCTTGGTCTGTTGGGTCGGCTGGGGCTACCAAATGTCGTTCGGGGACCAGCTCTTCCCGTTCCTCGGCCGACCCAACGTGGCCATGGACCAAGCCTTCCTGCTGAAAAGAACATTCAGTGGGTTTCTTCCAAATGCAACTATGATTTATTTTCAGTTCGTGTTTGCGGCCATTACGTTGATTTTGATCGCTGGGGCTTTGTTGGGGAGGATGAACTTCCATGCATGGATGTTATTTGTACCCCTTTGGTTGACATTTTCTTACACAATTACTTGCTATAGTATTTTTTACCCCAATGGCTGGTTGTATAAGATGGGGCTTATTGACTACTCTGGCGGCTACGTCATTCATCTCTCTTCTGGTGTTGCTGGTTTCACTGCTGCGTACTGGGTTGGGCCAAGGGCAACCAATGACAGGGAGAGATTTCCACCAAACAACATTCTGCTGATGCTTGCTGGGGCGGGCCTACTTTGGATGGGGTGGAGTGGATTTAACGGTGGAGATCCTTACATGGTGAGCACAGACGCATCTCTGGCCGTCCTCAACACCCACGTGTGCACTGCCACTAGCTTGCTGACGTGGCTCTTGCTTGACATTGCTTTCTTCGGGAAGCCCTCTGTGATCGGTGCCACTCAAGGCATGATCACTGGCTTAGTTTGCATTACTCCTGCTGCAGGAGTGGTACAAGGTTGGGCAGCAATCATAATGGGAATGATGTCAGGAAGCATCCCATGGTACACTATGATGGTCCTCCACAAGAAAATCGGCATCCTAAAGCAAGTCGATGACACCATGGCCGTGTTCCACACCCACGCCGTGGCCGGAAGCCTAGGTGGCATCCTTGCCGGCTTCTTTGCCCACCCGAAGCTCTGCCGTATATTCTACTTAACCGACAAGTGGGAACACTACATTGGCCTTGCCTATGGATTGCAAAGTGGCCATGTCGGTGCAGGGTTCAAGCAAATGGGAATCCAATTCCTAGGAGTAGCGTTTGTGGTTACTGTCAATGTGATCATCACTAGCATCATTTGCTTGTTCTTGAGGCTTTTCATTCCACTCAGGCTCAACGACGACGAGTTGCAGGTCGGTGATGACGCGATCCACGGCGAGGAGGCTTATGCATTGTGGGGAGATGGAGAGAAGTATGATGGTTCCAAGCATAACTCAGTTTATGGAATGGAAGAGTTTCCCATGAATGCGCCTAAAGCTGAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

472

Amino Acids

51.58

Weight (kDa)

6.24

Isoelectric Point (pI)

32.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ammonium_transp PF00909 23 - 439 1.2e-79 Ammonium Transporter Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016351)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1270
AccB1I GGYRCC 1 cut(s) 824
AccB7I CCANNNNNTGG 2 cut(s) 498, 1015
AccII CGCG 1 cut(s) 1295
AciI CCGC 5 cut(s) 158, 168, 365, 534, 659
AclWI GGATC 2 cut(s) 695, 1291
AcoI YGGCCR 7 cut(s) 265, 279, 366, 732, 993, 1017, 1135
AcvI CACGTG 1 cut(s) 751
AdeI CACNNNGTG 1 cut(s) 1015
AfaI GTAC 5 cut(s) 185, 438, 584, 882, 935
AfiI CCNNNNNNNGG 7 cut(s) 263, 498, 612, 872, 1015, 1095, 1306
AflIII ACRYGT 1 cut(s) 750
AgsI TTSAA 2 cut(s) 16, 1156
AjiI CACGTC 1 cut(s) 777
AjnI CCWGG 1 cut(s) 112
AjuI GAANNNNNNNTTGG 2 cut(s) 1092, 1124
AleI CACNNNNGTG 1 cut(s) 749
AluBI AGCT 4 cut(s) 250, 768, 1066, 1406
AluI AGCT 4 cut(s) 250, 768, 1066, 1406
Alw21I GWGCWC 2 cut(s) 719, 758
Alw44I GTGCAC 1 cut(s) 754
AlwI GGATC 2 cut(s) 695, 1291
ApaLI GTGCAC 1 cut(s) 754
ApeKI GCWGC 5 cut(s) 83, 194, 578, 869, 893
Asp700I GAANNNNTTC 1 cut(s) 1383
AspA2I CCTAGG 2 cut(s) 1027, 1177
AspLEI GCGC 2 cut(s) 7, 1399
AspS9I GGNCC 5 cut(s) 244, 286, 593, 661, 946
AsuHPI GGTGA 4 cut(s) 71, 172, 724, 1298
AvaII GGWCC 3 cut(s) 244, 286, 946
AvrII CCTAGG 2 cut(s) 1027, 1177
BaeGI GKGCMC 1 cut(s) 758
BalI TGGCCA 2 cut(s) 281, 1137
BanI GGYRCC 1 cut(s) 824
BanII GRGCYC 1 cut(s) 41
BbrPI CACGTG 1 cut(s) 751
Bbv12I GWGCWC 2 cut(s) 719, 758
BbvI GCAGC 5 cut(s) 70, 206, 565, 856, 905
BccI CCATC 5 cut(s) 505, 667, 937, 1325, 1340
BceAI ACGGC 6 cut(s) 96, 719, 980, 998, 1056, 1318
BciT130I CCWGG 1 cut(s) 114
BclI TGATCA 2 cut(s) 840, 1209
BfaI CTAG 4 cut(s) 765, 1028, 1178, 1218
BfmI CTRYAG 2 cut(s) 475, 870
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 1270
BglI GCCNNNNNGGC 2 cut(s) 176, 1032
BisI GCNGC 7 cut(s) 84, 195, 366, 535, 579, 870, 894
BlnI CCTAGG 2 cut(s) 1027, 1177
BlpI GCTNAGC 1 cut(s) 50
BlsI GCNGC 7 cut(s) 85, 196, 367, 536, 580, 871, 895
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 3 cut(s) 244, 286, 946
BmgBI CACGTC 1 cut(s) 777
BmgT120I GGNCC 5 cut(s) 244, 286, 593, 661, 946
BmiI GGNNCC 3 cut(s) 245, 826, 1351
BmrFI CCNGG 1 cut(s) 114
BmrI ACTGGG 1 cut(s) 595
BmsI GCATC 6 cut(s) 636, 734, 933, 975, 1044, 1230
BmuI ACTGGG 1 cut(s) 595
Bpu1102I GCTNAGC 1 cut(s) 50
BpuEI CTTGAG 2 cut(s) 816, 1258
BsaAI YACGTR 1 cut(s) 751
BsaBI GATNNNNATC 1 cut(s) 383
Bsc4I CCNNNNNNNGG 7 cut(s) 263, 498, 612, 872, 1015, 1095, 1306
Bse118I RCCGGY 1 cut(s) 1043
Bse1I ACTGG 2 cut(s) 590, 850
Bse3DI GCAATG 1 cut(s) 792
Bse8I GATNNNNATC 1 cut(s) 383
BseBI CCWGG 1 cut(s) 114
BseGI GGATG 6 cut(s) 414, 432, 678, 924, 966, 1035
BseJI GATNNNNATC 1 cut(s) 383
BseLI CCNNNNNNNGG 7 cut(s) 263, 498, 612, 872, 1015, 1095, 1306
BseMI GCAATG 1 cut(s) 792
BseMII CTCAG 3 cut(s) 64, 1270, 1377
BseNI ACTGG 2 cut(s) 590, 850
BseRI GAGGAG 1 cut(s) 1322
BseSI GKGCMC 1 cut(s) 758
BseX3I CGGCCG 1 cut(s) 265
BseXI GCAGC 5 cut(s) 70, 206, 565, 856, 905
BseYI CCCAGC 3 cut(s) 219, 389, 653
BsgI GTGCAG 1 cut(s) 1167
Bsh1236I CGCG 1 cut(s) 1295
Bsh1285I CGRYCG 1 cut(s) 268
BshNI GGYRCC 1 cut(s) 824
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 2 cut(s) 719, 758
BsiSI CCGG 2 cut(s) 1020, 1044
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 7 cut(s) 263, 498, 612, 872, 1015, 1095, 1306
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 1399
Bsp1286I GDGCHC 3 cut(s) 41, 719, 758
Bsp143I GATC 6 cut(s) 384, 700, 819, 840, 1209, 1296
Bsp1720I GCTNAGC 1 cut(s) 50
Bsp19I CCATGG 3 cut(s) 282, 929, 990
BspACI CCGC 5 cut(s) 158, 168, 365, 534, 659
BspCNI CTCAG 3 cut(s) 63, 1269, 1376
BspFNI CGCG 1 cut(s) 1295
BspLI GGNNCC 3 cut(s) 245, 826, 1351
BspMAI CTGCAG 1 cut(s) 874
BspMI ACCTGC 1 cut(s) 1270
BspPI GGATC 2 cut(s) 695, 1291
BspQI GCTCTTC 1 cut(s) 257
BspT107I GGYRCC 1 cut(s) 824
BsrDI GCAATG 1 cut(s) 792
BsrFI RCCGGY 1 cut(s) 1043
BsrI ACTGG 2 cut(s) 590, 850
BssAI RCCGGY 1 cut(s) 1043
BssMI GATC 6 cut(s) 384, 700, 819, 840, 1209, 1296
BssT1I CCWWGG 6 cut(s) 282, 596, 929, 990, 1027, 1177
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 2 cut(s) 695, 1201
Bst6I CTCTTC 3 cut(s) 257, 559, 1374
BstAPI GCANNNNNTGC 2 cut(s) 109, 1227
BstBAI YACGTR 1 cut(s) 751
BstC8I GCNNGC 7 cut(s) 37, 101, 110, 651, 661, 770, 1045
BstDEI CTNAG 4 cut(s) 50, 850, 1256, 1363
BstDSI CCRYGG 5 cut(s) 282, 929, 990, 1014, 1300
BstENI CCTNNNNNAGG 1 cut(s) 870
BstF5I GGATG 6 cut(s) 414, 432, 678, 924, 966, 1035
BstFNI CGCG 1 cut(s) 1295
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 1399
BstKTI GATC 6 cut(s) 387, 703, 822, 843, 1212, 1299
BstMBI GATC 6 cut(s) 384, 700, 819, 840, 1209, 1296
BstMCI CGRYCG 1 cut(s) 268
BstNI CCWGG 1 cut(s) 114
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 2 cut(s) 475, 870
BstSLI GKGCMC 1 cut(s) 758
BstUI CGCG 1 cut(s) 1295
BstV1I GCAGC 5 cut(s) 70, 206, 565, 856, 905
BstX2I RGATCY 1 cut(s) 700
BstYI RGATCY 1 cut(s) 700
BstZI CGGCCG 1 cut(s) 265
BtgI CCRYGG 5 cut(s) 282, 929, 990, 1014, 1300
BtrI CACGTC 1 cut(s) 777
BtsCI GGATG 6 cut(s) 414, 432, 678, 924, 966, 1035
BtsI GCAGTG 2 cut(s) 573, 756
BtsIMutI CAGTG 4 cut(s) 322, 573, 756, 843
BveI ACCTGC 1 cut(s) 1270
Cac8I GCNNGC 7 cut(s) 37, 101, 110, 651, 661, 770, 1045
CfoI GCGC 2 cut(s) 7, 1399
Cfr10I RCCGGY 1 cut(s) 1043
Cfr13I GGNCC 5 cut(s) 244, 286, 593, 661, 946
CseI GACGC 2 cut(s) 731, 1301
Csp6I GTAC 5 cut(s) 184, 437, 583, 881, 934
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviQI GTAC 5 cut(s) 184, 437, 583, 881, 934
DdeI CTNAG 4 cut(s) 50, 850, 1256, 1363
DpnI GATC 6 cut(s) 386, 702, 821, 842, 1211, 1298
DpnII GATC 6 cut(s) 384, 700, 819, 840, 1209, 1296
DraIII CACNNNGTG 1 cut(s) 1015
EaeI YGGCCR 7 cut(s) 265, 279, 366, 732, 993, 1017, 1135
EagI CGGCCG 1 cut(s) 265
Eam1104I CTCTTC 3 cut(s) 257, 559, 1374
EarI CTCTTC 3 cut(s) 257, 559, 1374
EciI GGCGGA 1 cut(s) 157
EclXI CGGCCG 1 cut(s) 265
Eco130I CCWWGG 6 cut(s) 282, 596, 929, 990, 1027, 1177
Eco24I GRGCYC 1 cut(s) 41
Eco47I GGWCC 3 cut(s) 244, 286, 946
Eco52I CGGCCG 1 cut(s) 265
Eco72I CACGTG 1 cut(s) 751
EcoNI CCTNNNNNAGG 1 cut(s) 870
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 6 cut(s) 282, 596, 929, 990, 1027, 1177
EcoT22I ATGCAT 2 cut(s) 424, 1321
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 6 cut(s) 282, 596, 929, 990, 1027, 1177
FaqI GGGAC 1 cut(s) 257
FauI CCCGC 1 cut(s) 652
FbaI TGATCA 2 cut(s) 840, 1209
Fnu4HI GCNGC 7 cut(s) 84, 195, 366, 535, 579, 870, 894
FokI GGATG 6 cut(s) 421, 439, 685, 911, 953, 1022
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 7 cut(s) 84, 195, 366, 535, 579, 870, 894
FspBI CTAG 4 cut(s) 765, 1028, 1178, 1218
GlaI GCGC 2 cut(s) 6, 1398
GluI GCNGC 7 cut(s) 84, 195, 366, 535, 579, 870, 894
GsaI CCCAGC 3 cut(s) 223, 393, 657
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 2 cut(s) 1020, 1044
HgaI GACGC 2 cut(s) 731, 1301
HhaI GCGC 2 cut(s) 7, 1399
Hin6I GCGC 2 cut(s) 5, 1397
HinP1I GCGC 2 cut(s) 5, 1397
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HinfI GANTC 1 cut(s) 1167
HpaII CCGG 2 cut(s) 1020, 1044
HphI GGTGA 4 cut(s) 71, 172, 724, 1298
Hpy166II GTNNAC 4 cut(s) 163, 450, 756, 936
Hpy188III TCNNGA 3 cut(s) 805, 918, 1237
Hpy8I GTNNAC 4 cut(s) 163, 450, 756, 936
Hpy99I CGWCG 2 cut(s) 1271, 1274
HpyAV CCTTC 3 cut(s) 181, 199, 304
HpyCH4III ACNGT 2 cut(s) 695, 1201
HpyCH4IV ACGT 5 cut(s) 276, 374, 540, 750, 776
HpyF3I CTNAG 4 cut(s) 50, 850, 1256, 1363
HpySE526I ACGT 5 cut(s) 276, 374, 540, 750, 776
HspAI GCGC 2 cut(s) 5, 1397
KroI GCCGGC 1 cut(s) 1043
KroNI GCCGGC 1 cut(s) 1045
Ksp22I TGATCA 2 cut(s) 840, 1209
Kzo9I GATC 6 cut(s) 384, 700, 819, 840, 1209, 1296
LguI GCTCTTC 1 cut(s) 257
LmnI GCTCC 1 cut(s) 12
Lsp1109I GCAGC 5 cut(s) 70, 206, 565, 856, 905
LweI GCATC 6 cut(s) 636, 734, 933, 975, 1044, 1230
MaeI CTAG 4 cut(s) 765, 1028, 1178, 1218
MaeII ACGT 5 cut(s) 276, 374, 540, 750, 776
MaeIII GTNAC 2 cut(s) 59, 1195
MalI GATC 6 cut(s) 386, 702, 821, 842, 1211, 1298
MboI GATC 6 cut(s) 384, 700, 819, 840, 1209, 1296
MboII GAAGA 5 cut(s) 244, 317, 546, 793, 1391
MflI RGATCY 1 cut(s) 700
MhlI GDGCHC 3 cut(s) 41, 719, 758
MlsI TGGCCA 2 cut(s) 281, 1137
MluCI AATT 2 cut(s) 465, 1172
MluNI TGGCCA 2 cut(s) 281, 1137
MmeI TCCRAC 1 cut(s) 46
Mox20I TGGCCA 2 cut(s) 281, 1137
Mph1103I ATGCAT 2 cut(s) 424, 1321
MroNI GCCGGC 1 cut(s) 1043
MroXI GAANNNNTTC 1 cut(s) 1383
MscI TGGCCA 2 cut(s) 281, 1137
MseI TTAA 2 cut(s) 690, 1085
MslI CAYNNNNRTG 4 cut(s) 749, 941, 995, 1143
Msp20I TGGCCA 2 cut(s) 281, 1137
MspI CCGG 2 cut(s) 1020, 1044
MspR9I CCNGG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 1399
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 1295
NaeI GCCGGC 1 cut(s) 1045
NcoI CCATGG 3 cut(s) 282, 929, 990
NdeII GATC 6 cut(s) 384, 700, 819, 840, 1209, 1296
NgoMIV GCCGGC 1 cut(s) 1043
NlaIV GGNNCC 3 cut(s) 245, 826, 1351
NmeAIII GCCGAG 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 59
NsiI ATGCAT 2 cut(s) 424, 1321
NspI RCATGY 1 cut(s) 103
OliI CACNNNNGTG 1 cut(s) 749
PaeI GCATGC 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 257
PctI GAATGC 1 cut(s) 1399
PdiI GCCGGC 1 cut(s) 1045
PdmI GAANNNNTTC 1 cut(s) 1383
PfeI GAWTC 1 cut(s) 1167
PflMI CCANNNNNTGG 2 cut(s) 498, 1015
PkrI GCNGC 7 cut(s) 85, 196, 367, 536, 580, 871, 895
PmaCI CACGTG 1 cut(s) 751
PmlI CACGTG 1 cut(s) 751
Ppu21I YACGTR 1 cut(s) 751
Psp6I CCWGG 1 cut(s) 112
PspCI CACGTG 1 cut(s) 751
PspFI CCCAGC 3 cut(s) 219, 389, 653
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 3 cut(s) 245, 826, 1351
PspPI GGNCC 5 cut(s) 244, 286, 593, 661, 946
PstI CTGCAG 1 cut(s) 874
PsuI RGATCY 1 cut(s) 700
RsaI GTAC 5 cut(s) 185, 438, 584, 882, 935
RsaNI GTAC 5 cut(s) 184, 437, 583, 881, 934
RseI CAYNNNNRTG 4 cut(s) 749, 941, 995, 1143
SapI GCTCTTC 1 cut(s) 257
SaqAI TTAA 2 cut(s) 690, 1085
SatI GCNGC 7 cut(s) 84, 195, 366, 535, 579, 870, 894
Sau3AI GATC 6 cut(s) 384, 700, 819, 840, 1209, 1296
Sau96I GGNCC 5 cut(s) 244, 286, 593, 661, 946
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 3 cut(s) 41, 719, 758
SfaNI GCATC 6 cut(s) 636, 734, 933, 975, 1044, 1230
SfcI CTRYAG 2 cut(s) 475, 870
SinI GGWCC 3 cut(s) 244, 286, 946
SmiMI CAYNNNNRTG 4 cut(s) 749, 941, 995, 1143
SmlI CTYRAG 2 cut(s) 831, 1237
SmoI CTYRAG 2 cut(s) 831, 1237
SphI GCATGC 1 cut(s) 103
Sse9I AATT 2 cut(s) 465, 1172
SsiI CCGC 5 cut(s) 158, 168, 365, 534, 659
SspMI CTAG 4 cut(s) 765, 1028, 1178, 1218
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 6 cut(s) 282, 596, 929, 990, 1027, 1177
TaaI ACNGT 2 cut(s) 695, 1201
TaiI ACGT 5 cut(s) 279, 377, 543, 753, 779
TaqI TCGA 1 cut(s) 981
TasI AATT 2 cut(s) 465, 1172
TauI GCSGC 2 cut(s) 368, 537
TfiI GAWTC 1 cut(s) 1167
Tru1I TTAA 2 cut(s) 690, 1085
Tru9I TTAA 2 cut(s) 690, 1085
TscAI CASTG 4 cut(s) 322, 580, 763, 850
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 5 cut(s) 83, 194, 578, 869, 893
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 5 cut(s) 163, 425, 536, 1237, 1406
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 4 cut(s) 322, 580, 763, 850
Van91I CCANNNNNTGG 2 cut(s) 498, 1015
VneI GTGCAC 1 cut(s) 754
VpaK11BI GGWCC 3 cut(s) 244, 286, 946
XagI CCTNNNNNAGG 1 cut(s) 870
XceI RCATGY 1 cut(s) 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XmaJI CCTAGG 2 cut(s) 1027, 1177
XmnI GAANNNNTTC 1 cut(s) 1383
XspI CTAG 4 cut(s) 765, 1028, 1178, 1218
Zsp2I ATGCAT 2 cut(s) 424, 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.