FvH4_5g32100

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
23194669 .. 23195112
444 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g32100.t1

Sequence Viewer

Length: 444 bp
ATGGAGAAAACAATCTCCCTCCTCCAACCACCCTACTTGACCACTCATCAGAACTTCATCTGTCTTCCATGGCTTTCTGCTCTTTCTATAAGCTCCTCTTTCCAAATCAAAAACAGTTACAGTCATATTGAACCCAGAAACAGAACCAGCATCCCAAGAACTCATATTCTTCGATCTAGTTGCCATGGCCGTGAGCCTATATATACATCATCAAACCCAGAAAAGAAGAAGGATGAGAAGCAAGGAAAGCAGTCCTTGTTGCGGTTTTTGGCTGATTTAGAGAAGCTGGGGAAGAATCTGAAGGAGAACTTGAGCCCAAAACAGAAGGGTGACTGGAAGGACTTGATGTTGATGAGTTTATCATTTGCTGTTTATGTGTATATCTCTCAGAAGCTTGTCTGTGCTTACTGTGCTTGGACATCCATGCCCAACCAAACATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

17.01

Weight (kDa)

9.51

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015309)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 262
AcoI YGGCCR 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 261
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 3 cut(s) 93, 286, 394
AluI AGCT 3 cut(s) 93, 286, 394
AoxI GGCC 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 341
BanII GRGCYC 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 56
BceAI ACGGC 1 cut(s) 174
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BfaI CTAG 1 cut(s) 177
BmsI GCATC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 331
BsaJI CCNNGG 2 cut(s) 68, 184
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 338
BseDI CCNNGG 2 cut(s) 68, 184
BseGI GGATG 3 cut(s) 150, 238, 419
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMII CTCAG 1 cut(s) 401
BseNI ACTGG 1 cut(s) 338
BseRI GAGGAG 2 cut(s) 11, 85
BseYI CCCAGC 1 cut(s) 286
BshFI GGCC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 261
BsnI GGCC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 1 cut(s) 173
Bsp19I CCATGG 2 cut(s) 68, 184
BspACI CCGC 1 cut(s) 262
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 400
BsrI ACTGG 1 cut(s) 338
BssECI CCNNGG 2 cut(s) 68, 184
BssMI GATC 1 cut(s) 173
BssT1I CCWWGG 2 cut(s) 68, 184
Bst4CI ACNGT 3 cut(s) 116, 122, 410
BstDEI CTNAG 1 cut(s) 387
BstDSI CCRYGG 2 cut(s) 68, 184
BstF5I GGATG 3 cut(s) 150, 238, 419
BstKTI GATC 1 cut(s) 176
BstMBI GATC 1 cut(s) 173
BstMWI GCNNNNNNNGC 2 cut(s) 247, 410
BstV2I GAAGAC 1 cut(s) 56
BsuRI GGCC 1 cut(s) 189
BtgI CCRYGG 2 cut(s) 68, 184
BtsCI GGATG 3 cut(s) 150, 238, 419
CspCI CAANNNNNGTGG 2 cut(s) 18, 53
CviAII CATG 4 cut(s) 69, 185, 424, 438
CviJI RGCY 8 cut(s) 73, 93, 189, 196, 272, 286, 315, 394
CviKI_1 RGCY 8 cut(s) 73, 93, 189, 196, 272, 286, 315, 394
DdeI CTNAG 1 cut(s) 387
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
EaeI YGGCCR 1 cut(s) 187
Eco130I CCWWGG 2 cut(s) 68, 184
Eco24I GRGCYC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 320
EcoT14I CCWWGG 2 cut(s) 68, 184
EcoT38I GRGCYC 1 cut(s) 317
ErhI CCWWGG 2 cut(s) 68, 184
FaeI CATG 4 cut(s) 72, 188, 427, 441
FalI AAGNNNNNCTT 6 cut(s) 82, 114, 239, 271, 293, 325
FatI CATG 4 cut(s) 68, 184, 423, 437
FokI GGATG 3 cut(s) 137, 245, 406
FriOI GRGCYC 1 cut(s) 317
FspBI CTAG 1 cut(s) 177
GsaI CCCAGC 1 cut(s) 290
HaeIII GGCC 1 cut(s) 189
Hin1II CATG 4 cut(s) 72, 188, 427, 441
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 1 cut(s) 295
HphI GGTGA 1 cut(s) 341
Hpy188I TCNGA 3 cut(s) 51, 300, 390
HpyAV CCTTC 4 cut(s) 223, 295, 319, 331
HpyCH4III ACNGT 3 cut(s) 116, 122, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 247, 410
HpyF3I CTNAG 1 cut(s) 387
Hsp92II CATG 4 cut(s) 72, 188, 427, 441
Kzo9I GATC 1 cut(s) 173
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 5 cut(s) 148, 160, 231, 272, 319
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 116, 329
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MboII GAAGA 4 cut(s) 56, 161, 238, 304
MhlI GDGCHC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 3 cut(s) 29, 32, 106
MslI CAYNNNNRTG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 247, 410
NcoI CCATGG 2 cut(s) 68, 184
NdeII GATC 1 cut(s) 173
NlaIII CATG 4 cut(s) 72, 188, 427, 441
NmuCI GTSAC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 295
PspFI CCCAGC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 189
Sau3AI GATC 1 cut(s) 173
SduI GDGCHC 1 cut(s) 317
SetI ASST 3 cut(s) 95, 288, 396
SfaNI GCATC 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
SsiI CCGC 1 cut(s) 262
SspMI CTAG 1 cut(s) 177
StyI CCWWGG 2 cut(s) 68, 184
TaaI ACNGT 3 cut(s) 116, 122, 410
TaqI TCGA 1 cut(s) 172
TfiI GAWTC 1 cut(s) 295
TseFI GTSAC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 1 cut(s) 46
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.