MD02G1308200.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
36349911 .. 36350363
453 bp
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UTR
Exon/CDS
Intron
MD02G1308200.v1.1.491

Sequence Viewer

Length: 453 bp
ATGGTCAAACACCAGACTTCCCCTCCCTTCCCCACTCAAACCATCCAAATGGAGAAACCAATCTTGCTCAATTCGACCTCCCAACCACCCTTCCTAATTACCCAAAATCTCTTCACTTTCCAGATCCCATCATCTGCCCTTTCAATTGGCAGTAATTCTTCCCAGATCAAAAGCAGAAGCAGAAGCAGAAGCAGCCCAGTTCTTGTATCTTGCCGAGGCCATGAGCCAACAGAGAAACAAGAGAAGCGAGAAAAAAAGCAGCAGCCAATGATGTTGCTGGGATTTGACAAGTTGGGGAAGAATTTGAAGGAGAATTTGAGCCCAAAGCAGAAGGGTGATTGGAAGGATGTGATGCTGATGAGCTTGTCATTTGCTGTTTATGTGTATATTTCTCAGAGGATTGTCTGTGCCTACTGTGCTTGGACTTCCATGGCCACCAACCATCCTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.06

Weight (kDa)

9.82

Isoelectric Point (pI)

61.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015309)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 118
AcoI YGGCCR 1 cut(s) 432
AcsI RAATTY 2 cut(s) 301, 313
AgsI TTSAA 2 cut(s) 144, 307
AluBI AGCT 1 cut(s) 363
AluI AGCT 1 cut(s) 363
AlwI GGATC 1 cut(s) 118
AoxI GGCC 2 cut(s) 217, 432
ApeKI GCWGC 3 cut(s) 192, 259, 262
ApoI RAATTY 2 cut(s) 301, 313
AsuHPI GGTGA 1 cut(s) 347
BalI TGGCCA 1 cut(s) 434
BanII GRGCYC 1 cut(s) 323
BbvI GCAGC 3 cut(s) 204, 271, 274
BccI CCATC 3 cut(s) 50, 136, 450
BisI GCNGC 3 cut(s) 193, 260, 263
BlsI GCNGC 3 cut(s) 194, 261, 264
BmrI ACTGGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 342
BmuI ACTGGG 1 cut(s) 191
BsaJI CCNNGG 3 cut(s) 214, 429, 446
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bse1I ACTGG 1 cut(s) 197
BseDI CCNNGG 3 cut(s) 214, 429, 446
BseGI GGATG 3 cut(s) 42, 352, 442
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 1 cut(s) 197
BseXI GCAGC 3 cut(s) 204, 271, 274
BseYI CCCAGC 1 cut(s) 277
BshFI GGCC 2 cut(s) 219, 434
BsnI GGCC 2 cut(s) 219, 434
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 2 cut(s) 123, 165
Bsp19I CCATGG 1 cut(s) 429
BspANI GGCC 2 cut(s) 219, 434
BspCNI CTCAG 1 cut(s) 406
BspPI GGATC 1 cut(s) 118
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 3 cut(s) 214, 429, 446
BssMI GATC 2 cut(s) 123, 165
BssT1I CCWWGG 2 cut(s) 429, 446
Bst4CI ACNGT 1 cut(s) 416
Bst6I CTCTTC 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 393
BstDSI CCRYGG 1 cut(s) 429
BstF5I GGATG 3 cut(s) 42, 352, 442
BstKTI GATC 2 cut(s) 126, 168
BstMBI GATC 2 cut(s) 123, 165
BstMWI GCNNNNNNNGC 2 cut(s) 192, 416
BstV1I GCAGC 3 cut(s) 204, 271, 274
BstX2I RGATCY 1 cut(s) 123
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 2 cut(s) 219, 434
BtgI CCRYGG 1 cut(s) 429
BtsCI GGATG 3 cut(s) 42, 352, 442
CviAII CATG 2 cut(s) 221, 430
CviJI RGCY 7 cut(s) 195, 219, 226, 265, 321, 363, 434
CviKI_1 RGCY 7 cut(s) 195, 219, 226, 265, 321, 363, 434
DdeI CTNAG 1 cut(s) 393
DpnI GATC 2 cut(s) 125, 167
DpnII GATC 2 cut(s) 123, 165
EaeI YGGCCR 1 cut(s) 432
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco130I CCWWGG 2 cut(s) 429, 446
Eco24I GRGCYC 1 cut(s) 323
EcoT14I CCWWGG 2 cut(s) 429, 446
EcoT38I GRGCYC 1 cut(s) 323
ErhI CCWWGG 2 cut(s) 429, 446
FaeI CATG 2 cut(s) 224, 433
FaiI YATR 4 cut(s) 222, 381, 387, 431
FatI CATG 2 cut(s) 220, 429
Fnu4HI GCNGC 3 cut(s) 193, 260, 263
FokI GGATG 3 cut(s) 29, 359, 429
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 3 cut(s) 193, 260, 263
GluI GCNGC 3 cut(s) 193, 260, 263
GsaI CCCAGC 1 cut(s) 281
HaeIII GGCC 2 cut(s) 219, 434
Hin1II CATG 2 cut(s) 224, 433
HphI GGTGA 1 cut(s) 347
Hpy188I TCNGA 1 cut(s) 396
Hpy188III TCNNGA 1 cut(s) 121
HpyAV CCTTC 5 cut(s) 37, 100, 301, 325, 337
HpyCH4III ACNGT 1 cut(s) 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 416
HpyF3I CTNAG 1 cut(s) 393
Hsp92II CATG 2 cut(s) 224, 433
Kzo9I GATC 2 cut(s) 123, 165
LpnPI CCDG 5 cut(s) 26, 134, 176, 210, 263
Lsp1109I GCAGC 3 cut(s) 204, 271, 274
LweI GCATC 1 cut(s) 342
MalI GATC 2 cut(s) 125, 167
MboI GATC 2 cut(s) 123, 165
MboII GAAGA 3 cut(s) 103, 150, 310
MfeI CAATTG 1 cut(s) 144
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 323
MlsI TGGCCA 1 cut(s) 434
MluCI AATT 6 cut(s) 70, 96, 144, 154, 301, 313
MluNI TGGCCA 1 cut(s) 434
MnlI CCTC 4 cut(s) 33, 88, 209, 390
Mox20I TGGCCA 1 cut(s) 434
MscI TGGCCA 1 cut(s) 434
MslI CAYNNNNRTG 1 cut(s) 47
Msp20I TGGCCA 1 cut(s) 434
MunI CAATTG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 192, 416
NcoI CCATGG 1 cut(s) 429
NdeII GATC 2 cut(s) 123, 165
NlaIII CATG 2 cut(s) 224, 433
NmeAIII GCCGAG 1 cut(s) 239
PkrI GCNGC 3 cut(s) 194, 261, 264
PspFI CCCAGC 1 cut(s) 277
PsuI RGATCY 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 3 cut(s) 193, 260, 263
Sau3AI GATC 2 cut(s) 123, 165
SduI GDGCHC 1 cut(s) 323
SetI ASST 2 cut(s) 80, 365
SfaNI GCATC 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 6 cut(s) 70, 96, 144, 154, 301, 313
StyI CCWWGG 2 cut(s) 429, 446
TaaI ACNGT 1 cut(s) 416
TaqI TCGA 1 cut(s) 74
TasI AATT 6 cut(s) 70, 96, 144, 154, 301, 313
TseI GCWGC 3 cut(s) 192, 259, 262
XapI RAATTY 2 cut(s) 301, 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.