Rw0G005100

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00200
Physical Location & Seq
Reverse (-)
48221 .. 48676
456 bp
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UTR
Exon/CDS
Intron
Rw0G005100.1

Sequence Viewer

Length: 456 bp
ATGGAGAAACCTATCTTGTTCAATTCCCTCCTCCAACCTCCCTACTTAACCACTCATCAAAACTTGATTTGTCTTCCATGGCTTTCTGCTGTTTCTGTAAGCCTTCATTCCAAGTCAAAAACAGTTCCAATCAAATTGAACCCAGAAACAGAACCAGCTGCCCAAGAACTCATATTCTTCTGTCTGTCTAGTTGCCATGGCCGTGAGCCTATAGATACATCATCAAACCTACAAAAGAAGAAAGATGAGAAGCAAGAAAAACCGTCATTGTTGCGGTTGTTGGCTGATTTCGTGAATCTGGGGAAGAACTTGAAGGAGAACTTGAGCCCAAAACAAAAGGGTGACTGGAAGGATTTGATGTTGATGAGCTTATCGTTTGCTGTTTATGTGTATATCTCTCAAAAGCTTGTCTGTGCTTACTGTGCTTGGACATCCATGCCCAACCAAACTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.2

Weight (kDa)

8.79

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015309)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 274
AcoI YGGCCR 1 cut(s) 199
AgsI TTSAA 3 cut(s) 22, 139, 313
AluBI AGCT 3 cut(s) 158, 369, 406
AluI AGCT 3 cut(s) 158, 369, 406
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 353
BanII GRGCYC 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 145
BceAI ACGGC 1 cut(s) 186
BfaI CTAG 1 cut(s) 189
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 343
BsaJI CCNNGG 2 cut(s) 77, 196
Bse1I ACTGG 1 cut(s) 350
BseDI CCNNGG 2 cut(s) 77, 196
BseGI GGATG 1 cut(s) 431
BseNI ACTGG 1 cut(s) 350
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 145
BshFI GGCC 1 cut(s) 201
BsnI GGCC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 329
Bsp19I CCATGG 2 cut(s) 77, 196
BspACI CCGC 1 cut(s) 274
BspANI GGCC 1 cut(s) 201
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 2 cut(s) 77, 196
BssT1I CCWWGG 2 cut(s) 77, 196
Bst4CI ACNGT 3 cut(s) 124, 264, 422
BstDSI CCRYGG 2 cut(s) 77, 196
BstF5I GGATG 1 cut(s) 431
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 65
BsuRI GGCC 1 cut(s) 201
BtgI CCRYGG 2 cut(s) 77, 196
BtsCI GGATG 1 cut(s) 431
CviAII CATG 3 cut(s) 78, 197, 436
CviJI RGCY 9 cut(s) 82, 102, 158, 201, 208, 284, 327, 369, 406
CviKI_1 RGCY 9 cut(s) 82, 102, 158, 201, 208, 284, 327, 369, 406
EaeI YGGCCR 1 cut(s) 199
Eco130I CCWWGG 2 cut(s) 77, 196
Eco24I GRGCYC 1 cut(s) 329
EcoT14I CCWWGG 2 cut(s) 77, 196
EcoT38I GRGCYC 1 cut(s) 329
ErhI CCWWGG 2 cut(s) 77, 196
FaeI CATG 3 cut(s) 81, 200, 439
FaiI YATR 7 cut(s) 79, 173, 198, 212, 387, 393, 437
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FatI CATG 3 cut(s) 77, 196, 435
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 1 cut(s) 418
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 189
GluI GCNGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 201
Hin1II CATG 3 cut(s) 81, 200, 439
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 1 cut(s) 295
HphI GGTGA 1 cut(s) 353
Hpy188III TCNNGA 1 cut(s) 292
HpyAV CCTTC 3 cut(s) 113, 307, 343
HpyCH4III ACNGT 3 cut(s) 124, 264, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
Hsp92II CATG 3 cut(s) 81, 200, 439
LpnPI CCDG 4 cut(s) 156, 168, 284, 331
Lsp1109I GCAGC 1 cut(s) 145
MaeI CTAG 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 341
MboII GAAGA 4 cut(s) 65, 169, 250, 316
MhlI GDGCHC 1 cut(s) 329
MluCI AATT 2 cut(s) 22, 134
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 3 cut(s) 38, 41, 48
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 422
NcoI CCATGG 2 cut(s) 77, 196
NlaIII CATG 3 cut(s) 81, 200, 439
NmuCI GTSAC 1 cut(s) 341
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 1 cut(s) 160
PvuII CAGCTG 1 cut(s) 158
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 1 cut(s) 159
SduI GDGCHC 1 cut(s) 329
SetI ASST 6 cut(s) 13, 40, 160, 231, 371, 408
SfcI CTRYAG 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 2 cut(s) 22, 134
SsiI CCGC 1 cut(s) 274
SspMI CTAG 1 cut(s) 189
StyI CCWWGG 2 cut(s) 77, 196
TaaI ACNGT 3 cut(s) 124, 264, 422
TasI AATT 2 cut(s) 22, 134
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 1 cut(s) 95
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.