FvH4_5g34302

Zinc-finger of C2H2 type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017315
Physical Location & Seq
Reverse (-)
24980943 .. 24985156
4214 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34302.t3

Sequence Viewer

Length: 1278 bp
ATGGGTTGGCAAGTTTTTCTTAAGCTCTCAGCAAAGTTCATGTCTGTTCTCTCCTGGCCTTCGTTTAGCTTGGTTTATGCTCTGTATGCTTCCATTCAGGCCATTCAGAGTGAATCTCACCCCAGAAATCAGCAATGTCTTGCTTACTGGGTCTTGTTTGCTTTATACACAATCTCAGAATCAACCCTTGCAAAGCTTTTCGATCGGCTTCCGCTCTGGCCTTACACAAAGGGTGTCATTACCATCCTGCTGGTGTTACCATACTTCCATGGTGCTTCTTATCTGTATGAACATTTTATCAGGTCCTATATTTCTGAGTATTCATTAATCCGTAAATGGAACTTATTGTCGTCACCAAGGGTAAACGGTATCTTTCCGAGGGGAGACAACCTTCTTGATGTGGTTGATAAAAGTGTTATCAGGATTGAACCACAAGAATTAGAGAGACCTGCCATATTTCAGGGAATACCAGCGTCCACTTCTGAAGCTATTGTAAGGGGAAATGATTTGCCAAGTAGTCCAAAGAAAATTCAGAGGAAGTGGAGCTGTGCTCTTTGTCTAATTAGCACCACAAGTGAAATTTGTTTGAAGATGCACTTCCAAGGTAGTAAACATGCCTTGAAAGTAAAAGAAGGCGTAAAAAAAGGCCCCATCAGTGAGTACAAATCTTCCACAAAGCTGAAGAGAACAAATGGAAGGGTTTTACTTGATAACTTGAACCAAATTGCTAGAACCAATTTTGAAAAGTGGAGCCGCATTCTAAGACCAATTAGATTGTGTAGATGGAAAAAGCCACAGGTTGGATGGACAAAATTGAATACTGATGGATCGGTAGACCCAGGAAATGCTGGTTTTGGGGGTCTACTTCGTAATTATAAGGGTGAACCAATATGTGCCTTTGTCTCTAAAGCTCTAGGGGATGATACTTTCTTGGTTGAATTATGGGCTATATGGAGAGGCCTTATTCTTGCCTCAAGTCTCGGGATTAAAGTATTATGGGTGGAGTCTGATTCATTGAGCGTTGTGAAGACAATTAATCGAGATCAGCCTTACAGTCTGAAGGCTAGTAGCTGCTTGAAGCATATCTGGGAACTTCTAAAGAAATTTGATGAGCACCGTGTATCTCATTCATGGCGTGAAACTAATAGGGCTGCTGATCATCTTGCGAAAATGGTTCTTTCTGAGAGTGACGTTGTCTTTTGGCCAGGTGATTTTCCTGATAGCCTCAATACAATTATCAAGGAGGATGCTGAAGGCAAGATATATTGTAGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 TB2_DP1_HVA22 zf-met

Protein Analysis

426

Amino Acids

48.4

Weight (kDa)

9.48

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 28 - 103 4.5e-19 TB2/DP1, HVA22 family
RVT_3 PF13456 273 - 391 1.7e-29 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017315)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g34302 FvH4_5g34302 FvH4_5g34302
prunus_persica Prupe.1G535200_v2.0.a1 Prupe.1G535200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0234881
rosa_laevigata RLG00000001207
rosa_roxburghii Rroxscaffold_3G00226680
rosa_samantha Rh7AG440600 Rh7BG413400 Rh7CG462300 Rh7DG430300
rosa_wichuraiana Rw7G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 876
Acc36I ACCTGC 1 cut(s) 457
AccB7I CCANNNNNTGG 1 cut(s) 800
AccBSI CCGCTC 1 cut(s) 214
AccI GTMKAC 2 cut(s) 834, 862
AciI CCGC 2 cut(s) 212, 754
AclWI GGATC 1 cut(s) 835
AcoI YGGCCR 1 cut(s) 1202
AcsI RAATTY 3 cut(s) 528, 579, 1103
AcuI CTGAAG 4 cut(s) 504, 701, 1079, 1272
AfaI GTAC 1 cut(s) 662
AfiI CCNNNNNNNGG 1 cut(s) 800
AflII CTTAAG 1 cut(s) 20
AgsI TTSAA 8 cut(s) 428, 589, 622, 718, 743, 817, 938, 1078
AjnI CCWGG 3 cut(s) 53, 838, 1204
AluBI AGCT 8 cut(s) 25, 69, 196, 488, 546, 679, 911, 1071
AluI AGCT 8 cut(s) 25, 69, 196, 488, 546, 679, 911, 1071
Alw21I GWGCWC 2 cut(s) 553, 1116
Alw26I GTCTC 4 cut(s) 378, 439, 907, 983
AlwI GGATC 1 cut(s) 835
Ama87I CYCGRG 1 cut(s) 980
AoxI GGCC 6 cut(s) 56, 99, 218, 646, 958, 1202
ApeKI GCWGC 2 cut(s) 1071, 1151
ApoI RAATTY 3 cut(s) 528, 579, 1103
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AseI ATTAAT 2 cut(s) 326, 1035
AspS9I GGNCC 2 cut(s) 303, 647
AsuHPI GGTGA 4 cut(s) 110, 345, 893, 1220
AvaI CYCGRG 1 cut(s) 980
AvaII GGWCC 1 cut(s) 303
BalI TGGCCA 1 cut(s) 1204
BbsI GAAGAC 1 cut(s) 1034
Bbv12I GWGCWC 2 cut(s) 553, 1116
BbvI GCAGC 2 cut(s) 1058, 1138
BccI CCATC 5 cut(s) 251, 659, 777, 798, 818
BciT130I CCWGG 3 cut(s) 55, 840, 1206
BclI TGATCA 1 cut(s) 1156
BcoDI GTCTC 4 cut(s) 378, 439, 907, 983
BfaI CTAG 3 cut(s) 729, 914, 1065
BfrI CTTAAG 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 457
BisI GCNGC 3 cut(s) 754, 1072, 1152
BlsI GCNGC 3 cut(s) 755, 1073, 1153
Bme1390I CCNGG 3 cut(s) 55, 840, 1206
Bme18I GGWCC 1 cut(s) 303
BmeT110I CYCGRG 1 cut(s) 980
BmgT120I GGNCC 2 cut(s) 303, 647
BmiI GGNNCC 2 cut(s) 649, 752
BmrFI CCNGG 3 cut(s) 55, 840, 1206
BmrI ACTGGG 1 cut(s) 157
BmsI GCATC 2 cut(s) 582, 1237
BmuI ACTGGG 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 1034
BplI GAGNNNNNCTC 4 cut(s) 100, 132, 535, 567
BpuEI CTTGAG 1 cut(s) 958
BsaI GGTCTC 1 cut(s) 439
BsaJI CCNNGG 5 cut(s) 268, 356, 377, 601, 838
Bsc4I CCNNNNNNNGG 1 cut(s) 800
Bse1I ACTGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 140
BseBI CCWGG 3 cut(s) 55, 840, 1206
BseDI CCNNGG 5 cut(s) 268, 356, 377, 601, 838
BseGI GGATG 4 cut(s) 243, 809, 925, 1252
BseLI CCNNNNNNNGG 1 cut(s) 800
BseMI GCAATG 1 cut(s) 140
BseMII CTCAG 4 cut(s) 42, 189, 306, 1173
BseNI ACTGG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 1058, 1138
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 6 cut(s) 58, 101, 220, 648, 960, 1204
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 2 cut(s) 553, 1116
BsiHKCI CYCGRG 1 cut(s) 980
BslI CCNNNNNNNGG 1 cut(s) 800
BsmAI GTCTC 4 cut(s) 378, 439, 907, 983
BsmI GAATGC 1 cut(s) 756
BsnI GGCC 6 cut(s) 58, 101, 220, 648, 960, 1204
Bso31I GGTCTC 1 cut(s) 439
BsoBI CYCGRG 1 cut(s) 980
Bsp1286I GDGCHC 2 cut(s) 553, 1116
Bsp143I GATC 4 cut(s) 202, 827, 1042, 1156
Bsp19I CCATGG 1 cut(s) 268
BspACI CCGC 2 cut(s) 212, 754
BspANI GGCC 6 cut(s) 58, 101, 220, 648, 960, 1204
BspCNI CTCAG 4 cut(s) 41, 188, 307, 1174
BspLI GGNNCC 2 cut(s) 649, 752
BspMI ACCTGC 1 cut(s) 457
BspPI GGATC 1 cut(s) 835
BspTI CTTAAG 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 439
BsrBI CCGCTC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 140
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 5 cut(s) 268, 356, 377, 601, 838
BssMI GATC 4 cut(s) 202, 827, 1042, 1156
BssT1I CCWWGG 3 cut(s) 268, 356, 601
Bst2UI CCWGG 3 cut(s) 55, 840, 1206
Bst4CI ACNGT 3 cut(s) 368, 1055, 1118
Bst6I CTCTTC 1 cut(s) 677
BstAFI CTTAAG 1 cut(s) 20
BstDEI CTNAG 5 cut(s) 28, 175, 315, 761, 1182
BstDSI CCRYGG 1 cut(s) 268
BstF5I GGATG 4 cut(s) 243, 809, 925, 1252
BstKTI GATC 4 cut(s) 205, 830, 1045, 1159
BstMAI GTCTC 4 cut(s) 378, 439, 907, 983
BstMBI GATC 4 cut(s) 202, 827, 1042, 1156
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 3 cut(s) 55, 840, 1206
BstNSI RCATGY 1 cut(s) 617
BstSCI CCNGG 3 cut(s) 53, 838, 1204
BstV1I GCAGC 2 cut(s) 1058, 1138
BstV2I GAAGAC 1 cut(s) 1034
BstXI CCANNNNNNTGG 1 cut(s) 250
BsuRI GGCC 6 cut(s) 58, 101, 220, 648, 960, 1204
BtgI CCRYGG 1 cut(s) 268
BtsCI GGATG 4 cut(s) 243, 809, 925, 1252
BtsIMutI CAGTG 1 cut(s) 661
BveI ACCTGC 1 cut(s) 457
Cfr13I GGNCC 2 cut(s) 303, 647
CseI GACGC 1 cut(s) 462
Csp6I GTAC 1 cut(s) 661
CviAII CATG 4 cut(s) 40, 269, 614, 1131
CviQI GTAC 1 cut(s) 661
DdeI CTNAG 5 cut(s) 28, 175, 315, 761, 1182
DpnI GATC 4 cut(s) 204, 829, 1044, 1158
DpnII GATC 4 cut(s) 202, 827, 1042, 1156
EaeI YGGCCR 1 cut(s) 1202
Eam1104I CTCTTC 1 cut(s) 677
EarI CTCTTC 1 cut(s) 677
Eco130I CCWWGG 3 cut(s) 268, 356, 601
Eco147I AGGCCT 1 cut(s) 960
Eco31I GGTCTC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 303
Eco57I CTGAAG 4 cut(s) 504, 701, 1079, 1272
Eco88I CYCGRG 1 cut(s) 980
EcoO109I RGGNCCY 2 cut(s) 303, 647
EcoRII CCWGG 3 cut(s) 53, 838, 1204
EcoT14I CCWWGG 3 cut(s) 268, 356, 601
ErhI CCWWGG 3 cut(s) 268, 356, 601
FaeI CATG 4 cut(s) 43, 272, 617, 1134
FalI AAGNNNNNCTT 3 cut(s) 35, 581, 613
FatI CATG 4 cut(s) 39, 268, 613, 1130
FbaI TGATCA 1 cut(s) 1156
FblI GTMKAC 2 cut(s) 834, 862
Fnu4HI GCNGC 3 cut(s) 754, 1072, 1152
FokI GGATG 4 cut(s) 230, 816, 932, 1259
Fsp4HI GCNGC 3 cut(s) 754, 1072, 1152
FspBI CTAG 3 cut(s) 729, 914, 1065
GluI GCNGC 3 cut(s) 754, 1072, 1152
HaeIII GGCC 6 cut(s) 58, 101, 220, 648, 960, 1204
HgaI GACGC 1 cut(s) 462
Hin1II CATG 4 cut(s) 43, 272, 617, 1134
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 4 cut(s) 113, 179, 1004, 1010
HphI GGTGA 4 cut(s) 110, 345, 893, 1220
Hpy166II GTNNAC 6 cut(s) 364, 477, 611, 835, 863, 884
Hpy188I TCNGA 9 cut(s) 108, 178, 316, 378, 484, 534, 1009, 1059, 1183
Hpy188III TCNNGA 5 cut(s) 395, 421, 982, 1040, 1217
Hpy8I GTNNAC 6 cut(s) 364, 477, 611, 835, 863, 884
HpyAV CCTTC 6 cut(s) 69, 401, 626, 690, 1054, 1247
HpyCH4III ACNGT 3 cut(s) 368, 1055, 1118
HpyCH4IV ACGT 1 cut(s) 1191
HpyCH4V TGCA 2 cut(s) 191, 595
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 5 cut(s) 28, 175, 315, 761, 1182
HpySE526I ACGT 1 cut(s) 1191
Hsp92II CATG 4 cut(s) 43, 272, 617, 1134
Ksp22I TGATCA 1 cut(s) 1156
Kzo9I GATC 4 cut(s) 202, 827, 1042, 1156
LmnI GCTCC 2 cut(s) 543, 750
Lsp1109I GCAGC 2 cut(s) 1058, 1138
LweI GCATC 2 cut(s) 582, 1237
MaeI CTAG 3 cut(s) 729, 914, 1065
MaeII ACGT 1 cut(s) 1191
MaeIII GTNAC 3 cut(s) 255, 351, 1187
MalI GATC 4 cut(s) 204, 829, 1044, 1158
MbiI CCGCTC 1 cut(s) 214
MboI GATC 4 cut(s) 202, 827, 1042, 1156
MboII GAAGA 4 cut(s) 601, 660, 694, 1039
MhlI GDGCHC 2 cut(s) 553, 1116
MlsI TGGCCA 1 cut(s) 1204
MluNI TGGCCA 1 cut(s) 1204
MlyI GAGTC 1 cut(s) 1013
MmeI TCCRAC 1 cut(s) 781
MnlI CCTC 7 cut(s) 372, 528, 950, 982, 1235, 1237, 1265
Mox20I TGGCCA 1 cut(s) 1204
MscI TGGCCA 1 cut(s) 1204
MseI TTAA 4 cut(s) 21, 326, 987, 1035
Msp20I TGGCCA 1 cut(s) 1204
MspCI CTTAAG 1 cut(s) 20
MspR9I CCNGG 3 cut(s) 55, 840, 1206
Mva1269I GAATGC 1 cut(s) 756
MvaI CCWGG 3 cut(s) 55, 840, 1206
MwoI GCNNNNNNNGC 1 cut(s) 86
NcoI CCATGG 1 cut(s) 268
NdeII GATC 4 cut(s) 202, 827, 1042, 1156
NlaIII CATG 4 cut(s) 43, 272, 617, 1134
NlaIV GGNNCC 2 cut(s) 649, 752
NmuCI GTSAC 2 cut(s) 351, 1187
NspI RCATGY 1 cut(s) 617
PceI AGGCCT 1 cut(s) 960
PctI GAATGC 1 cut(s) 756
PfeI GAWTC 3 cut(s) 113, 179, 1010
PflFI GACNNNGTC 1 cut(s) 1193
PflMI CCANNNNNTGG 1 cut(s) 800
PkrI GCNGC 3 cut(s) 755, 1073, 1153
Ple19I CGATCG 1 cut(s) 205
PleI GAGTC 1 cut(s) 1012
PpsI GAGTC 1 cut(s) 1012
PpuMI RGGWCCY 1 cut(s) 303
PshBI ATTAAT 2 cut(s) 326, 1035
PsiI TTATAA 1 cut(s) 876
Psp5II RGGWCCY 1 cut(s) 303
Psp6I CCWGG 3 cut(s) 53, 838, 1204
PspGI CCWGG 3 cut(s) 53, 838, 1204
PspN4I GGNNCC 2 cut(s) 649, 752
PspPI GGNCC 2 cut(s) 303, 647
PspPPI RGGWCCY 1 cut(s) 303
PsyI GACNNNGTC 1 cut(s) 1193
PvuI CGATCG 1 cut(s) 205
RsaI GTAC 1 cut(s) 662
RsaNI GTAC 1 cut(s) 661
SaqAI TTAA 4 cut(s) 21, 326, 987, 1035
SatI GCNGC 3 cut(s) 754, 1072, 1152
Sau3AI GATC 4 cut(s) 202, 827, 1042, 1156
Sau96I GGNCC 2 cut(s) 303, 647
SchI GAGTC 1 cut(s) 1013
ScrFI CCNGG 3 cut(s) 55, 840, 1206
SduI GDGCHC 2 cut(s) 553, 1116
SfaNI GCATC 2 cut(s) 582, 1237
SinI GGWCC 1 cut(s) 303
SmlI CTYRAG 2 cut(s) 20, 973
SmoI CTYRAG 2 cut(s) 20, 973
SseBI AGGCCT 1 cut(s) 960
SsiI CCGC 2 cut(s) 212, 754
SspMI CTAG 3 cut(s) 729, 914, 1065
StuI AGGCCT 1 cut(s) 960
StyD4I CCNGG 3 cut(s) 53, 838, 1204
StyI CCWWGG 3 cut(s) 268, 356, 601
TaaI ACNGT 3 cut(s) 368, 1055, 1118
TaiI ACGT 1 cut(s) 1194
TaqI TCGA 2 cut(s) 201, 1039
TatI WGTACW 1 cut(s) 660
TauI GCSGC 1 cut(s) 756
TfiI GAWTC 3 cut(s) 113, 179, 1010
Tru1I TTAA 4 cut(s) 21, 326, 987, 1035
Tru9I TTAA 4 cut(s) 21, 326, 987, 1035
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 2 cut(s) 351, 1187
TseI GCWGC 2 cut(s) 1071, 1151
Tsp45I GTSAC 2 cut(s) 351, 1187
TspDTI ATGAA 5 cut(s) 28, 303, 312, 1002, 1119
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 1 cut(s) 661
Tth111I GACNNNGTC 1 cut(s) 1193
Van91I CCANNNNNTGG 1 cut(s) 800
Vha464I CTTAAG 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 303
VspI ATTAAT 2 cut(s) 326, 1035
XapI RAATTY 3 cut(s) 528, 579, 1103
XceI RCATGY 1 cut(s) 617
XcmI CCANNNNNNNNNTGG 1 cut(s) 801
XmiI GTMKAC 2 cut(s) 834, 862
XspI CTAG 3 cut(s) 729, 914, 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.