Rh7BG413400

Zinc-finger of C2H2 type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0017315
Physical Location & Seq
Reverse (-)
46606119 .. 46609911
3793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG413400.1

Sequence Viewer

Length: 1233 bp
ATGTGCAGGCCTTCGTTTAGTTTGGTTTATGCCCTGTATGCTTCCATTCAGGCCGTTCAGAGTGACTCTCACTCCAGAAATCAGCGATGTCTTGCTTACTGGGTTTTGTTTGCTTTATACAAAATCTCAGAGTCAACGCTTGCAAAGCTTTTCTATTGGCTTCCACTATCGCCTTATACAAAGGGTGTCATTACGGTCCTTCTGGTGTTACCCTACTTCCATGGTGCTTCTTATCTGTATGAGCATTTTATTAGGTCCTATATTGCTGAGTATTCATTTATCTGGAAATGGAACTTCTTGTCCATACCAAGGGTAGAAGGTATCTTTTCGAGGGAGGACAGCCATCTTGATGTGGTTGATAAAAGTGTTATCAGGGTTGAACCACAAGAATCAGCGAGACCTGTCATATTTCAGGGAATACCAGCATCCAATTCTGAAACAATAGTAAGGGAGAGTGCTTTGCCAAGTAGTCCAAAGAAAATTCAGAGGGAGTGGAGCTGTGCTCTTTGTCTAATTAACGCTACAAGTGAAAATTGTTTGAAGATGCACTTCCAAGGTAAGAAACATGTCTTGAATTTAGAAGAACTAAGAGTTAGACAAGGCCCCAATGGTGGATTCAAATCTCCCCTGAAGCTGAAGAGAACAAATGGAAGGGTTTTACTTGATAACTTAAACCAAATTGCTAGAGCCAACTTGGAAAAATGGAGCGGCATTCTAAGACCAATTAGATTGTGTAGATGGAAAAAGCCACAGGTTGGATGGACAAAATTAAATACTGATGGATCGGTAGACCCAGGAAATGCTGGTTTTGGGGGTCTACTTCGTAATTATAAGGGCGAACCAATATGTGCCTTTGTCTCTAAAGCTCTAGTGGATGATGTTTTCTTGGTGGAATTATGGGCTATATGGAGAGGCCTTGTTCTTTCCTCGAGTCTTGGGATTAAAGTAATATGGGTTGAGTCTGATTCATTGAGCGTTGTGAAGACAATTAATCGAGATCAGCCTTACAGTATGAAGGCTGGTAGCTGTTTGAAGCATATCTGGTACCTTCTAAAGAAATTTGACAAGCACTGTGTATCTCATTCATGGCGTGAAACTAACAGGGCTGCTGATCATCTTTCAAAAATGGTTCTTTCTGTGAGTGACGTCGTTTTTTGGCCAGGTGATTTTCCTGATAGCCTTAATAAAATTATCAAGGAGGATGCTGAAGGCAGGATATACTGTAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 TB2_DP1_HVA22 zf-met

Protein Analysis

410

Amino Acids

46.82

Weight (kDa)

9.4

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 12 - 87 9e-18 TB2/DP1, HVA22 family
zf-met PF12874 165 - 189 3.3e-06 Zinc-finger of C2H2 type
RVT_3 PF13456 258 - 376 2.7e-26 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017315)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g34302 FvH4_5g34302 FvH4_5g34302
prunus_persica Prupe.1G535200_v2.0.a1 Prupe.1G535200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0234881
rosa_laevigata RLG00000001207
rosa_roxburghii Rroxscaffold_3G00226680
rosa_samantha Rh7AG440600 Rh7BG413400 Rh7CG462300 Rh7DG430300
rosa_wichuraiana Rw7G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 831
AatII GACGTC 1 cut(s) 1149
Acc65I GGTACC 1 cut(s) 1044
AccB1I GGYRCC 1 cut(s) 1044
AccB7I CCANNNNNTGG 1 cut(s) 755
AccBSI CCGCTC 1 cut(s) 708
AccI GTMKAC 2 cut(s) 789, 817
AciI CCGC 1 cut(s) 708
AclWI GGATC 1 cut(s) 790
AcoI YGGCCR 1 cut(s) 1157
AcsI RAATTY 3 cut(s) 480, 574, 1058
AcuI CTGAAG 3 cut(s) 650, 656, 1227
AcyI GRCGYC 1 cut(s) 1146
AfaI GTAC 1 cut(s) 1046
AfiI CCNNNNNNNGG 3 cut(s) 309, 611, 755
AflIII ACRYGT 1 cut(s) 565
AgsI TTSAA 6 cut(s) 380, 541, 574, 619, 1033, 1122
AjnI CCWGG 2 cut(s) 793, 1159
AjuI GAANNNNNNNTTGG 2 cut(s) 599, 631
AloI GAACNNNNNNTCC 2 cut(s) 284, 316
AluBI AGCT 5 cut(s) 148, 498, 634, 866, 1026
AluI AGCT 5 cut(s) 148, 498, 634, 866, 1026
Alw21I GWGCWC 1 cut(s) 505
Alw26I GTCTC 2 cut(s) 391, 862
AlwI GGATC 1 cut(s) 790
Ama87I CYCGRG 1 cut(s) 928
AoxI GGCC 5 cut(s) 8, 51, 601, 913, 1157
ApeKI GCWGC 1 cut(s) 1106
ApoI RAATTY 3 cut(s) 480, 574, 1058
AseI ATTAAT 1 cut(s) 990
Asp718I GGTACC 1 cut(s) 1044
AspS9I GGNCC 3 cut(s) 196, 255, 602
AsuHPI GGTGA 1 cut(s) 1175
AvaI CYCGRG 1 cut(s) 928
AvaII GGWCC 2 cut(s) 196, 255
BalI TGGCCA 1 cut(s) 1159
BanI GGYRCC 1 cut(s) 1044
BbsI GAAGAC 1 cut(s) 989
Bbv12I GWGCWC 1 cut(s) 505
BbvI GCAGC 1 cut(s) 1093
BccI CCATC 4 cut(s) 351, 732, 753, 773
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 2 cut(s) 795, 1161
BclI TGATCA 1 cut(s) 1111
BcoDI GTCTC 2 cut(s) 391, 862
BfaI CTAG 2 cut(s) 684, 869
BfmI CTRYAG 1 cut(s) 1222
BisI GCNGC 2 cut(s) 709, 1107
BlsI GCNGC 2 cut(s) 710, 1108
Bme1390I CCNGG 2 cut(s) 795, 1161
Bme18I GGWCC 2 cut(s) 196, 255
BmeT110I CYCGRG 1 cut(s) 928
BmgT120I GGNCC 3 cut(s) 196, 255, 602
BmiI GGNNCC 2 cut(s) 604, 1046
BmrFI CCNGG 2 cut(s) 795, 1161
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 3 cut(s) 434, 534, 1192
BmuI ACTGGG 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 989
BplI GAGNNNNNCTC 4 cut(s) 52, 84, 487, 519
BpmI CTGGAG 1 cut(s) 58
BsaBI GATNNNNATC 1 cut(s) 619
BsaHI GRCGYC 1 cut(s) 1146
BsaI GGTCTC 1 cut(s) 391
BsaJI CCNNGG 4 cut(s) 220, 308, 553, 793
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 3 cut(s) 309, 611, 755
Bse1I ACTGG 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 619
BseBI CCWGG 2 cut(s) 795, 1161
BseDI CCNNGG 4 cut(s) 220, 308, 553, 793
BseGI GGATG 4 cut(s) 425, 764, 880, 1207
BseJI GATNNNNATC 1 cut(s) 619
BseLI CCNNNNNNNGG 3 cut(s) 309, 611, 755
BseMII CTCAG 2 cut(s) 141, 258
BseNI ACTGG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 1093
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 5 cut(s) 10, 53, 603, 915, 1159
BshNI GGYRCC 1 cut(s) 1044
BsiHKAI GWGCWC 1 cut(s) 505
BsiHKCI CYCGRG 1 cut(s) 928
BslI CCNNNNNNNGG 3 cut(s) 309, 611, 755
BsmAI GTCTC 2 cut(s) 391, 862
BsmI GAATGC 1 cut(s) 711
BsnI GGCC 5 cut(s) 10, 53, 603, 915, 1159
Bso31I GGTCTC 1 cut(s) 391
BsoBI CYCGRG 1 cut(s) 928
Bsp1286I GDGCHC 1 cut(s) 505
Bsp143I GATC 3 cut(s) 782, 997, 1111
Bsp19I CCATGG 1 cut(s) 220
BspACI CCGC 1 cut(s) 708
BspANI GGCC 5 cut(s) 10, 53, 603, 915, 1159
BspCNI CTCAG 2 cut(s) 140, 259
BspLI GGNNCC 2 cut(s) 604, 1046
BspPI GGATC 1 cut(s) 790
BspT107I GGYRCC 1 cut(s) 1044
BspTNI GGTCTC 1 cut(s) 391
BsrBI CCGCTC 1 cut(s) 708
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 4 cut(s) 220, 308, 553, 793
BssMI GATC 3 cut(s) 782, 997, 1111
BssNI GRCGYC 1 cut(s) 1146
BssT1I CCWWGG 3 cut(s) 220, 308, 553
Bst2UI CCWGG 2 cut(s) 795, 1161
Bst4CI ACNGT 4 cut(s) 196, 1010, 1073, 1223
Bst6I CTCTTC 1 cut(s) 632
BstACI GRCGYC 1 cut(s) 1146
BstC8I GCNNGC 2 cut(s) 8, 141
BstDEI CTNAG 4 cut(s) 127, 267, 587, 716
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 4 cut(s) 425, 764, 880, 1207
BstKTI GATC 3 cut(s) 785, 1000, 1114
BstMAI GTCTC 2 cut(s) 391, 862
BstMBI GATC 3 cut(s) 782, 997, 1111
BstMWI GCNNNNNNNGC 2 cut(s) 38, 145
BstNI CCWGG 2 cut(s) 795, 1161
BstNSI RCATGY 1 cut(s) 569
BstSCI CCNGG 2 cut(s) 793, 1159
BstSFI CTRYAG 1 cut(s) 1222
BstV1I GCAGC 1 cut(s) 1093
BstV2I GAAGAC 1 cut(s) 989
BsuRI GGCC 5 cut(s) 10, 53, 603, 915, 1159
BtgI CCRYGG 1 cut(s) 220
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 4 cut(s) 425, 764, 880, 1207
BtsIMutI CAGTG 1 cut(s) 1069
Cac8I GCNNGC 2 cut(s) 8, 141
Cfr13I GGNCC 3 cut(s) 196, 255, 602
Csp6I GTAC 1 cut(s) 1045
CviAII CATG 3 cut(s) 221, 566, 1086
CviQI GTAC 1 cut(s) 1045
DdeI CTNAG 4 cut(s) 127, 267, 587, 716
DpnI GATC 3 cut(s) 784, 999, 1113
DpnII GATC 3 cut(s) 782, 997, 1111
EaeI YGGCCR 1 cut(s) 1157
Eam1104I CTCTTC 1 cut(s) 632
EarI CTCTTC 1 cut(s) 632
Eco130I CCWWGG 3 cut(s) 220, 308, 553
Eco147I AGGCCT 2 cut(s) 10, 915
Eco31I GGTCTC 1 cut(s) 391
Eco47I GGWCC 2 cut(s) 196, 255
Eco57I CTGAAG 3 cut(s) 650, 656, 1227
Eco88I CYCGRG 1 cut(s) 928
EcoO109I RGGNCCY 2 cut(s) 255, 602
EcoRII CCWGG 2 cut(s) 793, 1159
EcoT14I CCWWGG 3 cut(s) 220, 308, 553
ErhI CCWWGG 3 cut(s) 220, 308, 553
FaeI CATG 3 cut(s) 224, 569, 1089
FalI AAGNNNNNCTT 2 cut(s) 533, 565
FatI CATG 3 cut(s) 220, 565, 1085
FbaI TGATCA 1 cut(s) 1111
FblI GTMKAC 2 cut(s) 789, 817
Fnu4HI GCNGC 2 cut(s) 709, 1107
FokI GGATG 4 cut(s) 412, 771, 887, 1214
Fsp4HI GCNGC 2 cut(s) 709, 1107
FspBI CTAG 2 cut(s) 684, 869
GluI GCNGC 2 cut(s) 709, 1107
GsuI CTGGAG 1 cut(s) 58
HaeIII GGCC 5 cut(s) 10, 53, 603, 915, 1159
Hin1I GRCGYC 1 cut(s) 1146
Hin1II CATG 3 cut(s) 224, 569, 1089
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 7 cut(s) 65, 131, 389, 615, 931, 959, 965
HphI GGTGA 1 cut(s) 1175
Hpy166II GTNNAC 3 cut(s) 135, 790, 818
Hpy188I TCNGA 5 cut(s) 60, 130, 436, 486, 964
Hpy188III TCNNGA 6 cut(s) 75, 283, 347, 571, 995, 1172
Hpy8I GTNNAC 3 cut(s) 135, 790, 818
Hpy99I CGWCG 1 cut(s) 1151
HpyAV CCTTC 7 cut(s) 21, 209, 311, 645, 1009, 1058, 1202
HpyCH4III ACNGT 4 cut(s) 196, 1010, 1073, 1223
HpyCH4IV ACGT 1 cut(s) 1146
HpyCH4V TGCA 3 cut(s) 6, 143, 547
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 145
HpyF3I CTNAG 4 cut(s) 127, 267, 587, 716
HpySE526I ACGT 1 cut(s) 1146
Hsp92I GRCGYC 1 cut(s) 1146
Hsp92II CATG 3 cut(s) 224, 569, 1089
KpnI GGTACC 1 cut(s) 1048
Ksp22I TGATCA 1 cut(s) 1111
Kzo9I GATC 3 cut(s) 782, 997, 1111
LmnI GCTCC 2 cut(s) 495, 705
Lsp1109I GCAGC 1 cut(s) 1093
LweI GCATC 3 cut(s) 434, 534, 1192
MaeI CTAG 2 cut(s) 684, 869
MaeII ACGT 1 cut(s) 1146
MaeIII GTNAC 3 cut(s) 62, 207, 1142
MalI GATC 3 cut(s) 784, 999, 1113
MbiI CCGCTC 1 cut(s) 708
MboI GATC 3 cut(s) 782, 997, 1111
MboII GAAGA 4 cut(s) 553, 593, 649, 994
MhlI GDGCHC 1 cut(s) 505
MlsI TGGCCA 1 cut(s) 1159
MluNI TGGCCA 1 cut(s) 1159
MlyI GAGTC 4 cut(s) 59, 140, 940, 968
MmeI TCCRAC 1 cut(s) 736
MnlI CCTC 6 cut(s) 324, 328, 480, 905, 937, 1192
Mox20I TGGCCA 1 cut(s) 1159
MscI TGGCCA 1 cut(s) 1159
MseI TTAA 6 cut(s) 516, 671, 770, 942, 990, 1182
MslI CAYNNNNRTG 1 cut(s) 348
Msp20I TGGCCA 1 cut(s) 1159
MspR9I CCNGG 2 cut(s) 795, 1161
Mva1269I GAATGC 1 cut(s) 711
MvaI CCWGG 2 cut(s) 795, 1161
MwoI GCNNNNNNNGC 2 cut(s) 38, 145
NcoI CCATGG 1 cut(s) 220
NdeII GATC 3 cut(s) 782, 997, 1111
NlaIII CATG 3 cut(s) 224, 569, 1089
NlaIV GGNNCC 2 cut(s) 604, 1046
NmuCI GTSAC 2 cut(s) 62, 1142
NspI RCATGY 1 cut(s) 569
PaeR7I CTCGAG 1 cut(s) 928
PceI AGGCCT 2 cut(s) 10, 915
PciI ACATGT 1 cut(s) 565
PctI GAATGC 1 cut(s) 711
PfeI GAWTC 3 cut(s) 389, 615, 965
PflMI CCANNNNNTGG 1 cut(s) 755
PkrI GCNGC 2 cut(s) 710, 1108
PleI GAGTC 4 cut(s) 59, 139, 939, 967
PpsI GAGTC 4 cut(s) 59, 139, 939, 967
PpuMI RGGWCCY 1 cut(s) 255
PscI ACATGT 1 cut(s) 565
PshBI ATTAAT 1 cut(s) 990
PsiI TTATAA 1 cut(s) 831
Psp5II RGGWCCY 1 cut(s) 255
Psp6I CCWGG 2 cut(s) 793, 1159
PspGI CCWGG 2 cut(s) 793, 1159
PspN4I GGNNCC 2 cut(s) 604, 1046
PspPI GGNCC 3 cut(s) 196, 255, 602
PspPPI RGGWCCY 1 cut(s) 255
PspXI VCTCGAGB 1 cut(s) 928
RsaI GTAC 1 cut(s) 1046
RsaNI GTAC 1 cut(s) 1045
RseI CAYNNNNRTG 1 cut(s) 348
SaqAI TTAA 6 cut(s) 516, 671, 770, 942, 990, 1182
SatI GCNGC 2 cut(s) 709, 1107
Sau3AI GATC 3 cut(s) 782, 997, 1111
Sau96I GGNCC 3 cut(s) 196, 255, 602
SchI GAGTC 4 cut(s) 59, 140, 940, 968
ScrFI CCNGG 2 cut(s) 795, 1161
SduI GDGCHC 1 cut(s) 505
SfaNI GCATC 3 cut(s) 434, 534, 1192
SfcI CTRYAG 1 cut(s) 1222
Sfr274I CTCGAG 1 cut(s) 928
SinI GGWCC 2 cut(s) 196, 255
SlaI CTCGAG 1 cut(s) 928
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 1 cut(s) 928
SmoI CTYRAG 1 cut(s) 928
SseBI AGGCCT 2 cut(s) 10, 915
SsiI CCGC 1 cut(s) 708
SspMI CTAG 2 cut(s) 684, 869
StuI AGGCCT 2 cut(s) 10, 915
StyD4I CCNGG 2 cut(s) 793, 1159
StyI CCWWGG 3 cut(s) 220, 308, 553
TaaI ACNGT 4 cut(s) 196, 1010, 1073, 1223
TaiI ACGT 1 cut(s) 1149
TaqI TCGA 3 cut(s) 329, 929, 994
TauI GCSGC 1 cut(s) 711
TfiI GAWTC 3 cut(s) 389, 615, 965
Tru1I TTAA 6 cut(s) 516, 671, 770, 942, 990, 1182
Tru9I TTAA 6 cut(s) 516, 671, 770, 942, 990, 1182
TscAI CASTG 1 cut(s) 1076
TseFI GTSAC 2 cut(s) 62, 1142
TseI GCWGC 1 cut(s) 1106
Tsp45I GTSAC 2 cut(s) 62, 1142
TspDTI ATGAA 4 cut(s) 264, 957, 1028, 1074
TspRI CASTG 1 cut(s) 1076
Van91I CCANNNNNTGG 1 cut(s) 755
VpaK11BI GGWCC 2 cut(s) 196, 255
VspI ATTAAT 1 cut(s) 990
XapI RAATTY 3 cut(s) 480, 574, 1058
XceI RCATGY 1 cut(s) 569
XcmI CCANNNNNNNNNTGG 1 cut(s) 756
XhoI CTCGAG 1 cut(s) 928
XmiI GTMKAC 2 cut(s) 789, 817
XspI CTAG 2 cut(s) 684, 869
ZraI GACGTC 1 cut(s) 1147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.