Rh7DG430300

Zinc-finger of C2H2 type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0017315
Physical Location & Seq
Reverse (-)
61075722 .. 61079389
3668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG430300.1

Sequence Viewer

Length: 1233 bp
ATGTGCAGGCCTTCGTTTAGTTTGGTTTATGCCCTGTATGCTTCCATTCAGGCCATTCAGAGTGACTCTCACTCCAGAAATCAGCGATGTCTTGCTTACTGGGTTTTGTTTGCTTTATACAAAATCTCAGAGTCAACGCTTGCAAAGCTTTTCTATTGGCTTCCACTCTGGCCTTATACAAAGGGTGTCATTACGGTCCTTCTGGTGTTACCCTACTTCCATGGTGCTTCTTATCTGTATGAGCATTTTATCAGGTCCTATATTTCTGAGTATTCATTTATCTGGAAATGGAACTTCTTGTCCATACCAAGGGTAAAAGGTATATTTTCGAGGGGGGACAGCTACCCTGATGTGGTTGATAAAAGTGTTATCAGCATGGAACCACAAGAATCAGCAAAACCTGTCATATTTCAGGGAATACCGGCGTCCAGTTCTGAAGCAATAGCAAGGGAGAGCGCTTTGCCAAGTAGTCCAAAGAAAATTCAGAGGGAGTGGAGCTGTGCTCTTTGTCTAATTAACGCTAGCAGTGAAAATTGTTTGAAGGAGCACATCCAAGGTAAGAAACATGTCTTGCAAGTAGAAGCACTACGAGTAAGACAGGTCCCCATTGGTGGATACAAATCTTCCCTGAAGCTGAAGAGAACAAATGGAAGGGTTTTACTTGATAACTTGAATCAAATTGCTAGAGCCAACTTGGAAAAATGGGGTGGCATTCTAAGACCAATTAGATTGTGCAGATGGAAAAAGCCAGAGGTTGGATGGACAAAATTAAATACTGATGGATCTGTAGTATCAGGAAATGCTGGTTTTGGGGGTCTACTTCGTAATTATAAGGGTGAACCAATATGTGCCTTTGTCTCTAAAGCTCTAGGGGATGATATTTTCTCGGTTGAATTATGGGCTATATGGAGAGGCCTTGTTCTTGCCTCGGGTCTTGGGATTAAAGTAATATGGGTTGAGTCTGATTCATTGAGCGTTGTGAAGACAATTAATCGAGATCAGCCTTACAGTATGAAGGCTGGTAGCTGTTTGAAGCATATCTGGGACCTTCTAAAGAAATTTGACCAGCACTGTGTATCTCATTCATGGCGTGAAACTAACAGGGCTGCTGATCATCTTTCAAAAATGGTTCTTTCTGTGAGTGACGTCGTTTTTTGGCCAGGTGATTTTCCTGATAGCCTTCATAAAATTATCAAGGAGGATGCTGAAGGCAGGATATACTGTAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 TB2_DP1_HVA22 zf-met

Protein Analysis

410

Amino Acids

46.5

Weight (kDa)

9.38

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 12 - 87 1e-19 TB2/DP1, HVA22 family
RVT_3 PF13456 258 - 376 2.8e-27 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017315)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g34302 FvH4_5g34302 FvH4_5g34302
prunus_persica Prupe.1G535200_v2.0.a1 Prupe.1G535200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0234881
rosa_laevigata RLG00000001207
rosa_roxburghii Rroxscaffold_3G00226680
rosa_samantha Rh7AG440600 Rh7BG413400 Rh7CG462300 Rh7DG430300
rosa_wichuraiana Rw7G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 831
AatII GACGTC 1 cut(s) 1149
AccB7I CCANNNNNTGG 1 cut(s) 755
AccI GTMKAC 1 cut(s) 817
AclWI GGATC 1 cut(s) 790
AcoI YGGCCR 1 cut(s) 1157
AcsI RAATTY 2 cut(s) 480, 1058
AcuI CTGAAG 4 cut(s) 456, 650, 656, 1227
AcyI GRCGYC 2 cut(s) 425, 1146
AfeI AGCGCT 1 cut(s) 457
AfiI CCNNNNNNNGG 4 cut(s) 309, 352, 611, 755
AflIII ACRYGT 1 cut(s) 565
AgsI TTSAA 5 cut(s) 541, 673, 893, 1033, 1122
AjnI CCWGG 1 cut(s) 1159
AloI GAACNNNNNNTCC 2 cut(s) 284, 316
AluBI AGCT 6 cut(s) 148, 342, 498, 634, 866, 1026
AluI AGCT 6 cut(s) 148, 342, 498, 634, 866, 1026
Alw21I GWGCWC 2 cut(s) 505, 549
Alw26I GTCTC 1 cut(s) 862
AlwI GGATC 1 cut(s) 790
Ama87I CYCGRG 1 cut(s) 928
Aor51HI AGCGCT 1 cut(s) 457
AoxI GGCC 5 cut(s) 8, 51, 170, 913, 1157
ApeKI GCWGC 1 cut(s) 1106
ApoI RAATTY 2 cut(s) 480, 1058
AseI ATTAAT 1 cut(s) 990
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 4 cut(s) 196, 255, 601, 1045
AsuHPI GGTGA 2 cut(s) 848, 1175
AsuNHI GCTAGC 1 cut(s) 521
AvaI CYCGRG 1 cut(s) 928
AvaII GGWCC 4 cut(s) 196, 255, 601, 1045
BalI TGGCCA 1 cut(s) 1159
BbsI GAAGAC 1 cut(s) 989
Bbv12I GWGCWC 2 cut(s) 505, 549
BbvI GCAGC 1 cut(s) 1093
BccI CCATC 3 cut(s) 732, 753, 773
BciT130I CCWGG 1 cut(s) 1161
BciVI GTATCC 1 cut(s) 608
BclI TGATCA 1 cut(s) 1111
BcoDI GTCTC 1 cut(s) 862
BfaI CTAG 3 cut(s) 522, 684, 869
BfmI CTRYAG 2 cut(s) 786, 1222
BfoI RGCGCY 1 cut(s) 459
BfuI GTATCC 1 cut(s) 608
BisI GCNGC 1 cut(s) 1107
BlsI GCNGC 1 cut(s) 1108
Bme1390I CCNGG 1 cut(s) 1161
Bme18I GGWCC 4 cut(s) 196, 255, 601, 1045
BmeT110I CYCGRG 1 cut(s) 928
BmgT120I GGNCC 4 cut(s) 196, 255, 601, 1045
BmiI GGNNCC 3 cut(s) 381, 603, 1046
BmrFI CCNGG 1 cut(s) 1161
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 1192
BmtI GCTAGC 1 cut(s) 525
BmuI ACTGGG 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 989
BplI GAGNNNNNCTC 4 cut(s) 52, 84, 487, 519
BpmI CTGGAG 1 cut(s) 58
BsaBI GATNNNNATC 1 cut(s) 619
BsaHI GRCGYC 2 cut(s) 425, 1146
BsaJI CCNNGG 4 cut(s) 220, 308, 553, 927
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 4 cut(s) 309, 352, 611, 755
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 2 cut(s) 104, 429
Bse8I GATNNNNATC 1 cut(s) 619
BseBI CCWGG 1 cut(s) 1161
BseDI CCNNGG 4 cut(s) 220, 308, 553, 927
BseGI GGATG 4 cut(s) 549, 764, 880, 1207
BseJI GATNNNNATC 1 cut(s) 619
BseLI CCNNNNNNNGG 4 cut(s) 309, 352, 611, 755
BseMII CTCAG 2 cut(s) 141, 258
BseNI ACTGG 2 cut(s) 104, 429
BseXI GCAGC 1 cut(s) 1093
BsgI GTGCAG 2 cut(s) 25, 754
BshFI GGCC 5 cut(s) 10, 53, 172, 915, 1159
BsiHKAI GWGCWC 2 cut(s) 505, 549
BsiHKCI CYCGRG 1 cut(s) 928
BsiSI CCGG 1 cut(s) 422
BslFI GGGAC 3 cut(s) 350, 587, 1058
BslI CCNNNNNNNGG 4 cut(s) 309, 352, 611, 755
BsmAI GTCTC 1 cut(s) 862
BsmFI GGGAC 3 cut(s) 350, 587, 1058
BsmI GAATGC 1 cut(s) 711
BsnI GGCC 5 cut(s) 10, 53, 172, 915, 1159
BsoBI CYCGRG 1 cut(s) 928
Bsp1286I GDGCHC 2 cut(s) 505, 549
Bsp143I GATC 3 cut(s) 782, 997, 1111
Bsp19I CCATGG 1 cut(s) 220
BspANI GGCC 5 cut(s) 10, 53, 172, 915, 1159
BspCNI CTCAG 2 cut(s) 140, 259
BspLI GGNNCC 3 cut(s) 381, 603, 1046
BspOI GCTAGC 1 cut(s) 525
BspPI GGATC 1 cut(s) 790
BsrFI RCCGGY 1 cut(s) 421
BsrI ACTGG 2 cut(s) 104, 429
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 4 cut(s) 220, 308, 553, 927
BssMI GATC 3 cut(s) 782, 997, 1111
BssNI GRCGYC 2 cut(s) 425, 1146
BssT1I CCWWGG 3 cut(s) 220, 308, 553
Bst2UI CCWGG 1 cut(s) 1161
Bst4CI ACNGT 4 cut(s) 196, 1010, 1073, 1223
Bst6I CTCTTC 1 cut(s) 632
BstACI GRCGYC 2 cut(s) 425, 1146
BstC8I GCNNGC 3 cut(s) 8, 141, 523
BstDEI CTNAG 3 cut(s) 127, 267, 716
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 4 cut(s) 549, 764, 880, 1207
BstH2I RGCGCY 1 cut(s) 459
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 3 cut(s) 785, 1000, 1114
BstMAI GTCTC 1 cut(s) 862
BstMBI GATC 3 cut(s) 782, 997, 1111
BstMWI GCNNNNNNNGC 2 cut(s) 38, 145
BstNI CCWGG 1 cut(s) 1161
BstNSI RCATGY 1 cut(s) 569
BstSCI CCNGG 1 cut(s) 1159
BstSFI CTRYAG 2 cut(s) 786, 1222
BstV1I GCAGC 1 cut(s) 1093
BstV2I GAAGAC 1 cut(s) 989
BstX2I RGATCY 1 cut(s) 782
BstYI RGATCY 1 cut(s) 782
BsuI GTATCC 1 cut(s) 608
BsuRI GGCC 5 cut(s) 10, 53, 172, 915, 1159
BtgI CCRYGG 1 cut(s) 220
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 4 cut(s) 549, 764, 880, 1207
BtsI GCAGTG 1 cut(s) 532
BtsIMutI CAGTG 2 cut(s) 532, 1069
Cac8I GCNNGC 3 cut(s) 8, 141, 523
CfoI GCGC 1 cut(s) 458
Cfr10I RCCGGY 1 cut(s) 421
Cfr13I GGNCC 4 cut(s) 196, 255, 601, 1045
CseI GACGC 1 cut(s) 414
CviAII CATG 4 cut(s) 221, 376, 566, 1086
DdeI CTNAG 3 cut(s) 127, 267, 716
DpnI GATC 3 cut(s) 784, 999, 1113
DpnII GATC 3 cut(s) 782, 997, 1111
EaeI YGGCCR 1 cut(s) 1157
Eam1104I CTCTTC 1 cut(s) 632
EarI CTCTTC 1 cut(s) 632
Eco130I CCWWGG 3 cut(s) 220, 308, 553
Eco147I AGGCCT 2 cut(s) 10, 915
Eco47I GGWCC 4 cut(s) 196, 255, 601, 1045
Eco47III AGCGCT 1 cut(s) 457
Eco57I CTGAAG 4 cut(s) 456, 650, 656, 1227
Eco88I CYCGRG 1 cut(s) 928
EcoO109I RGGNCCY 3 cut(s) 255, 601, 1045
EcoRII CCWGG 1 cut(s) 1159
EcoT14I CCWWGG 3 cut(s) 220, 308, 553
ErhI CCWWGG 3 cut(s) 220, 308, 553
FaeI CATG 4 cut(s) 224, 379, 569, 1089
FaqI GGGAC 3 cut(s) 350, 587, 1058
FatI CATG 4 cut(s) 220, 375, 565, 1085
FbaI TGATCA 1 cut(s) 1111
FblI GTMKAC 1 cut(s) 817
Fnu4HI GCNGC 1 cut(s) 1107
FokI GGATG 4 cut(s) 536, 771, 887, 1214
Fsp4HI GCNGC 1 cut(s) 1107
FspBI CTAG 3 cut(s) 522, 684, 869
GlaI GCGC 1 cut(s) 457
GluI GCNGC 1 cut(s) 1107
GsuI CTGGAG 1 cut(s) 58
HaeII RGCGCY 1 cut(s) 459
HaeIII GGCC 5 cut(s) 10, 53, 172, 915, 1159
HapII CCGG 1 cut(s) 422
HgaI GACGC 1 cut(s) 414
HhaI GCGC 1 cut(s) 458
Hin1I GRCGYC 2 cut(s) 425, 1146
Hin1II CATG 4 cut(s) 224, 379, 569, 1089
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 6 cut(s) 65, 131, 389, 673, 959, 965
HpaII CCGG 1 cut(s) 422
HphI GGTGA 2 cut(s) 848, 1175
Hpy166II GTNNAC 3 cut(s) 135, 818, 839
Hpy188I TCNGA 6 cut(s) 60, 130, 268, 436, 486, 964
Hpy188III TCNNGA 5 cut(s) 75, 283, 795, 995, 1172
Hpy8I GTNNAC 3 cut(s) 135, 818, 839
Hpy99I CGWCG 1 cut(s) 1151
HpyAV CCTTC 8 cut(s) 21, 209, 535, 645, 1009, 1058, 1190, 1202
HpyCH4III ACNGT 4 cut(s) 196, 1010, 1073, 1223
HpyCH4IV ACGT 1 cut(s) 1146
HpyCH4V TGCA 4 cut(s) 6, 143, 574, 735
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 145
HpyF3I CTNAG 3 cut(s) 127, 267, 716
HpySE526I ACGT 1 cut(s) 1146
Hsp92I GRCGYC 2 cut(s) 425, 1146
Hsp92II CATG 4 cut(s) 224, 379, 569, 1089
HspAI GCGC 1 cut(s) 456
Ksp22I TGATCA 1 cut(s) 1111
Kzo9I GATC 3 cut(s) 782, 997, 1111
LmnI GCTCC 2 cut(s) 495, 544
Lsp1109I GCAGC 1 cut(s) 1093
LweI GCATC 1 cut(s) 1192
MaeI CTAG 3 cut(s) 522, 684, 869
MaeII ACGT 1 cut(s) 1146
MaeIII GTNAC 3 cut(s) 62, 207, 1142
MalI GATC 3 cut(s) 784, 999, 1113
MboI GATC 3 cut(s) 782, 997, 1111
MboII GAAGA 3 cut(s) 615, 649, 994
MflI RGATCY 1 cut(s) 782
MhlI GDGCHC 2 cut(s) 505, 549
MlsI TGGCCA 1 cut(s) 1159
MluNI TGGCCA 1 cut(s) 1159
MlyI GAGTC 3 cut(s) 59, 140, 968
MmeI TCCRAC 1 cut(s) 736
MnlI CCTC 6 cut(s) 324, 480, 745, 905, 937, 1192
Mox20I TGGCCA 1 cut(s) 1159
MscI TGGCCA 1 cut(s) 1159
MseI TTAA 4 cut(s) 516, 770, 942, 990
Msp20I TGGCCA 1 cut(s) 1159
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 1 cut(s) 1161
Mva1269I GAATGC 1 cut(s) 711
MvaI CCWGG 1 cut(s) 1161
MwoI GCNNNNNNNGC 2 cut(s) 38, 145
NcoI CCATGG 1 cut(s) 220
NdeII GATC 3 cut(s) 782, 997, 1111
NheI GCTAGC 1 cut(s) 521
NlaIII CATG 4 cut(s) 224, 379, 569, 1089
NlaIV GGNNCC 3 cut(s) 381, 603, 1046
NmuCI GTSAC 2 cut(s) 62, 1142
NspI RCATGY 1 cut(s) 569
PceI AGGCCT 2 cut(s) 10, 915
PciI ACATGT 1 cut(s) 565
PctI GAATGC 1 cut(s) 711
PfeI GAWTC 3 cut(s) 389, 673, 965
PflMI CCANNNNNTGG 1 cut(s) 755
PkrI GCNGC 1 cut(s) 1108
PleI GAGTC 3 cut(s) 59, 139, 967
PpsI GAGTC 3 cut(s) 59, 139, 967
PpuMI RGGWCCY 3 cut(s) 255, 601, 1045
PscI ACATGT 1 cut(s) 565
PshBI ATTAAT 1 cut(s) 990
PsiI TTATAA 1 cut(s) 831
Psp5II RGGWCCY 3 cut(s) 255, 601, 1045
Psp6I CCWGG 1 cut(s) 1159
PspGI CCWGG 1 cut(s) 1159
PspN4I GGNNCC 3 cut(s) 381, 603, 1046
PspPI GGNCC 4 cut(s) 196, 255, 601, 1045
PspPPI RGGWCCY 3 cut(s) 255, 601, 1045
PsuI RGATCY 1 cut(s) 782
SaqAI TTAA 4 cut(s) 516, 770, 942, 990
SatI GCNGC 1 cut(s) 1107
Sau3AI GATC 3 cut(s) 782, 997, 1111
Sau96I GGNCC 4 cut(s) 196, 255, 601, 1045
SchI GAGTC 3 cut(s) 59, 140, 968
ScrFI CCNGG 1 cut(s) 1161
SduI GDGCHC 2 cut(s) 505, 549
SfaNI GCATC 1 cut(s) 1192
SfcI CTRYAG 2 cut(s) 786, 1222
SinI GGWCC 4 cut(s) 196, 255, 601, 1045
SseBI AGGCCT 2 cut(s) 10, 915
SspMI CTAG 3 cut(s) 522, 684, 869
StuI AGGCCT 2 cut(s) 10, 915
StyD4I CCNGG 1 cut(s) 1159
StyI CCWWGG 3 cut(s) 220, 308, 553
TaaI ACNGT 4 cut(s) 196, 1010, 1073, 1223
TaiI ACGT 1 cut(s) 1149
TaqI TCGA 2 cut(s) 329, 994
TfiI GAWTC 3 cut(s) 389, 673, 965
Tru1I TTAA 4 cut(s) 516, 770, 942, 990
Tru9I TTAA 4 cut(s) 516, 770, 942, 990
TscAI CASTG 2 cut(s) 532, 1076
TseFI GTSAC 2 cut(s) 62, 1142
TseI GCWGC 1 cut(s) 1106
Tsp45I GTSAC 2 cut(s) 62, 1142
TspDTI ATGAA 5 cut(s) 264, 957, 1028, 1074, 1172
TspRI CASTG 2 cut(s) 532, 1076
Van91I CCANNNNNTGG 1 cut(s) 755
VpaK11BI GGWCC 4 cut(s) 196, 255, 601, 1045
VspI ATTAAT 1 cut(s) 990
XapI RAATTY 2 cut(s) 480, 1058
XceI RCATGY 1 cut(s) 569
XcmI CCANNNNNNNNNTGG 1 cut(s) 756
XmiI GTMKAC 1 cut(s) 817
XspI CTAG 3 cut(s) 522, 684, 869
ZraI GACGTC 1 cut(s) 1147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.