Prupe.1G535200_v2.0.a1

Zinc-finger of C2H2 type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017315
Physical Location & Seq
Reverse (-)
43742873 .. 43746278
3406 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G535200.2

Sequence Viewer

Length: 1371 bp
ATGGGTTGGGAAGCTTTTCTTCAGGTCTTAGCAGAACTCTTCTTGGGTGTTCTTTCCTGGCCTTCATTTAATTTGGTTTATACCCTGTATGCTTCCATTCAGGCTATAGAGAGTGACTCTCACTCCAGAAATCAGCAATGTCTTTCTTACTGGGTTATGTTTGCTTTGTACAAAATCTCAGAGGAAGCGCTTGGAAAACTTTTTTACTGGCTTCCGGTGTGGCCCTACACAAAGGGTGCCATTACCGTCTTGCTGGTGTTACCTTACTTTGGTGGTGCTTCTTATCTGTACAAGCATTTTATTAGGCCCTATATTTCTGAGAATTCAGTTATATGGAAATGGAACATCCTGTCCATACAAAGGATAAATGGTTTCAATTCAGGGGAGGATAACTATCCTGATGTAGTTGATAAAAACGTTATCAGGACCGAACCACAAAAGTCAGAGGGAGCTGTCATATTTAAGGGAACACCTGCGTCAAGTTCTGAAAAAGAAGGAAGGGAGTATACTTCGCCTAGTAGTCCAAAGAAAATTCAGAGGGAGTGGACCTGTGCTCTTTGTCTAATTAGCACTACAAGTGGAAAATGTTTAAAGAAACACCTCCGAGGGAAAAAACATGAGACCCAAGTAGCAGCACTAAGAACTTACAAACAAGGCCCCATTAGTGGATACAAATCATCCCTAAAGCTGAAGAGAACAGATGGAATGATTTTTAATCTAAACCAAATGGCAAGAGCAAATGGAAAGATTTTTAATCTAAACCAAATGGCAAGAGCAAATGGGAAGATTTTTAATCTAAACCAAATTGCAAGAGCCAACCTGGAAAAATGGAGCGGCATTCTAAGCCCAGTTGCCAGACCAATTAGAATGTGTATATGGAAAAAGCCGGAGCTCGGATGGACAAAATTAAATACAGATGGATCTGTAGACCGAGAAAATGCTGGTTATGGTGGTCTACTTCGTGATTATAAGGGTGACCCAATATGTGCTTTTGTCTCTAAAGCTCTAGGAGATGACATTTTTTTGGTTGAACTATGGGCTATATGGAGAGGCCTTGTTCTTGCCTTGAGTCTTGGGATTAAAGTAATATGGGTCGAGTCTGATTCAGAGAGCGTTGTGCAGACCATTAATAGAGACCGGCCTTACAGTCAAAAGGCTAGTAGCTGTTTGAAGCATATCTGGGAACTTCTAAATAAATTCGACAAGCACCAGGTATCTCATTCATGGCGTGAAACTAACAGGGCTGCTGATCATCTTTCAAAAATGGTTCTTTTGGGAAGTGATGTTGTTTTCTGGCCAGTTGATTTTCCTGATAGCCTTCATAACATTATCAAGGAGGATGCCGAAGGCAGGATATATTTTAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 TB2_DP1_HVA22 zf-met

Protein Analysis

457

Amino Acids

51.98

Weight (kDa)

9.29

Isoelectric Point (pI)

30.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017315)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g34302 FvH4_5g34302 FvH4_5g34302
prunus_persica Prupe.1G535200_v2.0.a1 Prupe.1G535200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0234881
rosa_laevigata RLG00000001207
rosa_roxburghii Rroxscaffold_3G00226680
rosa_samantha Rh7AG440600 Rh7BG413400 Rh7CG462300 Rh7DG430300
rosa_wichuraiana Rw7G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 969
AarI CACCTGC 1 cut(s) 481
Acc36I ACCTGC 1 cut(s) 481
AccB1I GGYRCC 1 cut(s) 236
AccBSI CCGCTC 1 cut(s) 834
AccI GTMKAC 3 cut(s) 506, 927, 955
AciI CCGC 1 cut(s) 834
AclI AACGTT 1 cut(s) 417
AclWI GGATC 1 cut(s) 928
AcoI YGGCCR 1 cut(s) 1295
AcsI RAATTY 3 cut(s) 322, 531, 1196
AcuI CTGAAG 2 cut(s) 5, 710
AfaI GTAC 2 cut(s) 170, 290
AfeI AGCGCT 1 cut(s) 189
AfiI CCNNNNNNNGG 5 cut(s) 269, 360, 665, 893, 1350
AgsI TTSAA 4 cut(s) 376, 1031, 1171, 1260
AjnI CCWGG 3 cut(s) 56, 819, 1209
AloI GAACNNNNNNTCC 2 cut(s) 335, 367
AluBI AGCT 6 cut(s) 14, 452, 688, 892, 1004, 1164
AluI AGCT 6 cut(s) 14, 452, 688, 892, 1004, 1164
Alw21I GWGCWC 2 cut(s) 556, 894
Alw26I GTCTC 3 cut(s) 614, 1000, 1128
AlwI GGATC 1 cut(s) 928
Aor51HI AGCGCT 1 cut(s) 189
AoxI GGCC 7 cut(s) 59, 221, 305, 655, 1051, 1139, 1295
ApeKI GCWGC 2 cut(s) 632, 1244
ApoI RAATTY 3 cut(s) 322, 531, 1196
AseI ATTAAT 1 cut(s) 1128
Asp700I GAANNNNTTC 1 cut(s) 15
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 5 cut(s) 222, 306, 426, 546, 656
AsuHPI GGTGA 1 cut(s) 986
AvaII GGWCC 2 cut(s) 426, 546
BalI TGGCCA 1 cut(s) 1297
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 894
BarI GAAGNNNNNNTAC 2 cut(s) 490, 522
Bbv12I GWGCWC 2 cut(s) 556, 894
BbvI GCAGC 2 cut(s) 644, 1231
BccI CCATC 3 cut(s) 695, 891, 911
BciT130I CCWGG 3 cut(s) 58, 821, 1211
BciVI GTATCC 1 cut(s) 662
BclI TGATCA 1 cut(s) 1249
BcoDI GTCTC 3 cut(s) 614, 1000, 1128
BfaI CTAG 3 cut(s) 516, 1007, 1158
BfmI CTRYAG 2 cut(s) 105, 924
BfoI RGCGCY 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 481
BfuI GTATCC 1 cut(s) 662
BisI GCNGC 3 cut(s) 633, 835, 1245
BlsI GCNGC 3 cut(s) 634, 836, 1246
Bme1390I CCNGG 3 cut(s) 58, 821, 1211
Bme18I GGWCC 2 cut(s) 426, 546
BmgT120I GGNCC 5 cut(s) 222, 306, 426, 546, 656
BmiI GGNNCC 2 cut(s) 238, 658
BmrFI CCNGG 3 cut(s) 58, 821, 1211
BmrI ACTGGG 2 cut(s) 160, 842
BmsI GCATC 1 cut(s) 1330
BmuI ACTGGG 2 cut(s) 160, 842
BplI GAGNNNNNCTC 4 cut(s) 101, 133, 103, 135
BpmI CTGGAG 1 cut(s) 109
BpuEI CTTGAG 1 cut(s) 1087
BsaBI GATNNNNATC 2 cut(s) 393, 673
BsaI GGTCTC 2 cut(s) 614, 1128
BsaJI CCNNGG 1 cut(s) 604
BsaWI WCCGGW 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 5 cut(s) 269, 360, 665, 893, 1350
Bse118I RCCGGY 1 cut(s) 1137
Bse1I ACTGG 4 cut(s) 155, 212, 848, 1298
Bse3DI GCAATG 1 cut(s) 143
Bse8I GATNNNNATC 2 cut(s) 393, 673
BseBI CCWGG 3 cut(s) 58, 821, 1211
BseDI CCNNGG 1 cut(s) 604
BseGI GGATG 4 cut(s) 345, 677, 902, 1345
BseJI GATNNNNATC 2 cut(s) 393, 673
BseLI CCNNNNNNNGG 5 cut(s) 269, 360, 665, 893, 1350
BseMI GCAATG 1 cut(s) 143
BseMII CTCAG 2 cut(s) 192, 309
BseNI ACTGG 4 cut(s) 155, 212, 848, 1298
BseXI GCAGC 2 cut(s) 644, 1231
BsgI GTGCAG 1 cut(s) 1139
BshFI GGCC 7 cut(s) 61, 223, 307, 657, 1053, 1141, 1297
BshNI GGYRCC 1 cut(s) 236
BsiHKAI GWGCWC 2 cut(s) 556, 894
BsiSI CCGG 3 cut(s) 215, 887, 1138
BslI CCNNNNNNNGG 5 cut(s) 269, 360, 665, 893, 1350
BsmAI GTCTC 3 cut(s) 614, 1000, 1128
BsmI GAATGC 1 cut(s) 837
BsnI GGCC 7 cut(s) 61, 223, 307, 657, 1053, 1141, 1297
Bso31I GGTCTC 2 cut(s) 614, 1128
Bsp1286I GDGCHC 2 cut(s) 556, 894
Bsp1407I TGTACA 2 cut(s) 168, 288
Bsp143I GATC 2 cut(s) 920, 1249
BspACI CCGC 1 cut(s) 834
BspANI GGCC 7 cut(s) 61, 223, 307, 657, 1053, 1141, 1297
BspCNI CTCAG 2 cut(s) 191, 310
BspLI GGNNCC 2 cut(s) 238, 658
BspMI ACCTGC 1 cut(s) 481
BspPI GGATC 1 cut(s) 928
BspT107I GGYRCC 1 cut(s) 236
BspTNI GGTCTC 2 cut(s) 614, 1128
BsrBI CCGCTC 1 cut(s) 834
BsrDI GCAATG 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 1137
BsrGI TGTACA 2 cut(s) 168, 288
BsrI ACTGG 4 cut(s) 155, 212, 848, 1298
BssAI RCCGGY 1 cut(s) 1137
BssECI CCNNGG 1 cut(s) 604
BssMI GATC 2 cut(s) 920, 1249
BssNAI GTATAC 1 cut(s) 507
Bst1107I GTATAC 1 cut(s) 507
Bst2UI CCWGG 3 cut(s) 58, 821, 1211
Bst4CI ACNGT 2 cut(s) 247, 1148
Bst6I CTCTTC 2 cut(s) 44, 686
BstAUI TGTACA 2 cut(s) 168, 288
BstDEI CTNAG 5 cut(s) 28, 178, 318, 638, 842
BstEII GGTNACC 1 cut(s) 974
BstF5I GGATG 4 cut(s) 345, 677, 902, 1345
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 2 cut(s) 923, 1252
BstMAI GTCTC 3 cut(s) 614, 1000, 1128
BstMBI GATC 2 cut(s) 920, 1249
BstMWI GCNNNNNNNGC 1 cut(s) 843
BstNI CCWGG 3 cut(s) 58, 821, 1211
BstPI GGTNACC 1 cut(s) 974
BstSCI CCNGG 3 cut(s) 56, 819, 1209
BstSFI CTRYAG 2 cut(s) 105, 924
BstV1I GCAGC 2 cut(s) 644, 1231
BstX2I RGATCY 1 cut(s) 920
BstYI RGATCY 1 cut(s) 920
BstZ17I GTATAC 1 cut(s) 507
BsuI GTATCC 1 cut(s) 662
BsuRI GGCC 7 cut(s) 61, 223, 307, 657, 1053, 1141, 1297
BtsCI GGATG 4 cut(s) 345, 677, 902, 1345
BveI ACCTGC 1 cut(s) 481
CfoI GCGC 1 cut(s) 190
Cfr10I RCCGGY 1 cut(s) 1137
Cfr13I GGNCC 5 cut(s) 222, 306, 426, 546, 656
CseI GACGC 1 cut(s) 465
CsiI ACCWGGT 1 cut(s) 1209
Csp6I GTAC 2 cut(s) 169, 289
CviAII CATG 2 cut(s) 617, 1224
CviQI GTAC 2 cut(s) 169, 289
DdeI CTNAG 5 cut(s) 28, 178, 318, 638, 842
DpnI GATC 2 cut(s) 922, 1251
DpnII GATC 2 cut(s) 920, 1249
DraI TTTAAA 1 cut(s) 591
EaeI YGGCCR 1 cut(s) 1295
Eam1104I CTCTTC 2 cut(s) 44, 686
EarI CTCTTC 2 cut(s) 44, 686
Ecl136II GAGCTC 1 cut(s) 892
Eco147I AGGCCT 1 cut(s) 1053
Eco24I GRGCYC 1 cut(s) 894
Eco31I GGTCTC 2 cut(s) 614, 1128
Eco47I GGWCC 2 cut(s) 426, 546
Eco47III AGCGCT 1 cut(s) 189
Eco53kI GAGCTC 1 cut(s) 892
Eco57I CTGAAG 2 cut(s) 5, 710
Eco91I GGTNACC 1 cut(s) 974
EcoICRI GAGCTC 1 cut(s) 892
EcoO109I RGGNCCY 2 cut(s) 306, 656
EcoO65I GGTNACC 1 cut(s) 974
EcoRI GAATTC 1 cut(s) 322
EcoRII CCWGG 3 cut(s) 56, 819, 1209
EcoT38I GRGCYC 1 cut(s) 894
FaeI CATG 2 cut(s) 620, 1227
FalI AAGNNNNNCTT 1 cut(s) 35
FatI CATG 2 cut(s) 616, 1223
FbaI TGATCA 1 cut(s) 1249
FblI GTMKAC 3 cut(s) 506, 927, 955
Fnu4HI GCNGC 3 cut(s) 633, 835, 1245
FokI GGATG 4 cut(s) 332, 664, 909, 1352
FriOI GRGCYC 1 cut(s) 894
Fsp4HI GCNGC 3 cut(s) 633, 835, 1245
FspBI CTAG 3 cut(s) 516, 1007, 1158
GlaI GCGC 1 cut(s) 189
GluI GCNGC 3 cut(s) 633, 835, 1245
GsuI CTGGAG 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 191
HaeIII GGCC 7 cut(s) 61, 223, 307, 657, 1053, 1141, 1297
HapII CCGG 3 cut(s) 215, 887, 1138
HgaI GACGC 1 cut(s) 465
HhaI GCGC 1 cut(s) 190
Hin1II CATG 2 cut(s) 620, 1227
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 4 cut(s) 116, 1069, 1097, 1103
HpaII CCGG 3 cut(s) 215, 887, 1138
HphI GGTGA 1 cut(s) 986
Hpy166II GTNNAC 4 cut(s) 507, 546, 928, 956
Hpy188I TCNGA 9 cut(s) 181, 319, 445, 487, 537, 605, 896, 1102, 1108
Hpy188III TCNNGA 5 cut(s) 126, 398, 424, 962, 1310
Hpy8I GTNNAC 4 cut(s) 507, 546, 928, 956
HpyAV CCTTC 5 cut(s) 72, 488, 492, 1328, 1340
HpyCH4III ACNGT 2 cut(s) 247, 1148
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 2 cut(s) 809, 1120
HpyF10VI GCNNNNNNNGC 1 cut(s) 843
HpyF3I CTNAG 5 cut(s) 28, 178, 318, 638, 842
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 2 cut(s) 620, 1227
HspAI GCGC 1 cut(s) 188
Ksp22I TGATCA 1 cut(s) 1249
Kzo9I GATC 2 cut(s) 920, 1249
LmnI GCTCC 3 cut(s) 449, 831, 889
Lsp1109I GCAGC 2 cut(s) 644, 1231
LweI GCATC 1 cut(s) 1330
MabI ACCWGGT 1 cut(s) 1209
MaeI CTAG 3 cut(s) 516, 1007, 1158
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 3 cut(s) 113, 258, 974
MalI GATC 2 cut(s) 922, 1251
MbiI CCGCTC 1 cut(s) 834
MboI GATC 2 cut(s) 920, 1249
MboII GAAGA 4 cut(s) 11, 31, 703, 796
MflI RGATCY 1 cut(s) 920
MhlI GDGCHC 2 cut(s) 556, 894
MlsI TGGCCA 1 cut(s) 1297
MluCI AATT 9 cut(s) 70, 322, 376, 531, 564, 804, 861, 905, 1196
MluNI TGGCCA 1 cut(s) 1297
MlyI GAGTC 3 cut(s) 110, 1078, 1106
MnlI CCTC 8 cut(s) 175, 379, 439, 531, 599, 611, 1043, 1330
Mox20I TGGCCA 1 cut(s) 1297
MroXI GAANNNNTTC 1 cut(s) 15
MscI TGGCCA 1 cut(s) 1297
MseI TTAA 9 cut(s) 69, 462, 590, 714, 753, 792, 908, 1080, 1128
Msp20I TGGCCA 1 cut(s) 1297
MspI CCGG 3 cut(s) 215, 887, 1138
MspR9I CCNGG 3 cut(s) 58, 821, 1211
Mva1269I GAATGC 1 cut(s) 837
MvaI CCWGG 3 cut(s) 58, 821, 1211
MwoI GCNNNNNNNGC 1 cut(s) 843
NdeII GATC 2 cut(s) 920, 1249
NlaIII CATG 2 cut(s) 620, 1227
NlaIV GGNNCC 2 cut(s) 238, 658
NmuCI GTSAC 2 cut(s) 113, 974
PaqCI CACCTGC 1 cut(s) 481
PceI AGGCCT 1 cut(s) 1053
PctI GAATGC 1 cut(s) 837
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 1 cut(s) 1103
PkrI GCNGC 3 cut(s) 634, 836, 1246
PleI GAGTC 3 cut(s) 110, 1077, 1105
PpsI GAGTC 3 cut(s) 110, 1077, 1105
PshBI ATTAAT 1 cut(s) 1128
PsiI TTATAA 1 cut(s) 969
Psp124BI GAGCTC 1 cut(s) 894
Psp1406I AACGTT 1 cut(s) 417
Psp6I CCWGG 3 cut(s) 56, 819, 1209
PspEI GGTNACC 1 cut(s) 974
PspGI CCWGG 3 cut(s) 56, 819, 1209
PspN4I GGNNCC 2 cut(s) 238, 658
PspPI GGNCC 5 cut(s) 222, 306, 426, 546, 656
PsuI RGATCY 1 cut(s) 920
RsaI GTAC 2 cut(s) 170, 290
RsaNI GTAC 2 cut(s) 169, 289
SacI GAGCTC 1 cut(s) 894
SaqAI TTAA 9 cut(s) 69, 462, 590, 714, 753, 792, 908, 1080, 1128
SatI GCNGC 3 cut(s) 633, 835, 1245
Sau3AI GATC 2 cut(s) 920, 1249
Sau96I GGNCC 5 cut(s) 222, 306, 426, 546, 656
SchI GAGTC 3 cut(s) 110, 1078, 1106
ScrFI CCNGG 3 cut(s) 58, 821, 1211
SduI GDGCHC 2 cut(s) 556, 894
SexAI ACCWGGT 1 cut(s) 1209
SfaNI GCATC 1 cut(s) 1330
SfcI CTRYAG 2 cut(s) 105, 924
SinI GGWCC 2 cut(s) 426, 546
SmlI CTYRAG 1 cut(s) 1066
SmoI CTYRAG 1 cut(s) 1066
Sse9I AATT 9 cut(s) 70, 322, 376, 531, 564, 804, 861, 905, 1196
SseBI AGGCCT 1 cut(s) 1053
SsiI CCGC 1 cut(s) 834
SspMI CTAG 3 cut(s) 516, 1007, 1158
SstI GAGCTC 1 cut(s) 894
StuI AGGCCT 1 cut(s) 1053
StyD4I CCNGG 3 cut(s) 56, 819, 1209
TaaI ACNGT 2 cut(s) 247, 1148
TaiI ACGT 1 cut(s) 420
TaqI TCGA 2 cut(s) 1095, 1200
TaqII GACCGA 2 cut(s) 443, 945
TasI AATT 9 cut(s) 70, 322, 376, 531, 564, 804, 861, 905, 1196
TatI WGTACW 2 cut(s) 168, 288
TauI GCSGC 1 cut(s) 837
TfiI GAWTC 1 cut(s) 1103
Tru1I TTAA 9 cut(s) 69, 462, 590, 714, 753, 792, 908, 1080, 1128
Tru9I TTAA 9 cut(s) 69, 462, 590, 714, 753, 792, 908, 1080, 1128
TseFI GTSAC 2 cut(s) 113, 974
TseI GCWGC 2 cut(s) 632, 1244
Tsp45I GTSAC 2 cut(s) 113, 974
TspDTI ATGAA 3 cut(s) 54, 1212, 1310
VpaK11BI GGWCC 2 cut(s) 426, 546
VspI ATTAAT 1 cut(s) 1128
XapI RAATTY 3 cut(s) 322, 531, 1196
XmiI GTMKAC 3 cut(s) 506, 927, 955
XmnI GAANNNNTTC 1 cut(s) 15
XspI CTAG 3 cut(s) 516, 1007, 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.