Rw7G036630

Zinc-finger of C2H2 type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0017315
Physical Location & Seq
Reverse (-)
55379395 .. 55382732
3338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G036630.1

Sequence Viewer

Length: 1281 bp
ATGGGTTGGCTAGTTTTTCTTAAGCTCTCAGCAAAGTTTTTAACTGTTCTTTCCTGGCCTTCGTTTAGTTTGGTTTATGCCCTGTATGCTTCCATTCAGGCCATTCAGAGTGACTCTCACTCCAGAAATCAGCGATGTCTTGCTTACTGGGTTTTGTTTGCTTTATACAAAATCTCAGAGTCAACGCTTGCAAAGCTTTTCTATTGGCTTCCACTCTGGCCTTATACAAAGGGTGTCATTACGGTCCTTCTGGTGTTACCCTACTTCCATGGTGCTTCTTATCTGTATGAGCATTTTATCAGGTCCTATATTTCTGAGTATTCATTTATCTGGAAATGGAACTTCTTGTCCATACCAAGGGTAAAAGGTATATTTTCGAGGGGGGACAGCTACCCTGATGTGGTTGATAAAAGTGTTATCAGCATGGAACCACAAGAATCAGCAAAACCTGTCATATTTCAAGGAATACCGGCGTCCAGTTCTGAAGCAATAGCAAGGGAGAACGCTTTGCCAAGTAGTCCAAAGAAAATTCAGAGGGAGTGGAGCTGTGCTCTTTGTCTAATTAACACTAGCAGTGAAAATTGTTTGAAGGAGCACATCCAAGGTAAGAAACATGTCTTGCAAGTAGAAGCACTACGAGTAAGACAGGTCCCCATTGGTGGATACAAATCTTCCCTGAAGCTGAAGAGAACAAATGGAAGGGTTTTACTTGATAACTTGAATCAAATTGCTAGAGCCAACTTGGAAAAATGGGGTGGCATTCTAAGACCAATTAGATTGTGCAGATGGAAAAAGCCAGAGGTTGGATGGACAAAATTAAATACTGATGGATCTGTAGTATCAGGAAATGCTGGTTTTGGGGGTCTACTTCGTAATTATAAGGGTGAACCAATATGTGCCTTTGTCTCTAAAGCTCTAGGGAATGATATTTTCTCGGTTGAATTATGGGCTATATGGAGAGGCCTTGTTCTTGCCTCGGGTCTTGGGATTAAAGTAATATGGGTTGAGTCTGATTCATTGAGCGTTGTGAAGACAATTAATCGAGATCAGCCTTACAGTATGAAGGCTGGTAGCTGTTTGAAGCATATCTGGGACCTTCTAAAGAAATTTGACCAGCACTGTGTATCTCATTCATGGCGTGAAACTAACAGGGCTGCTGATCATCTTTCAAAAATGGTTCTTTCTGTGAGTGACGTCGTTTTTTGGCCAGGTGATTTTCCTGATAGCCTTCATAAAATTATCAAGGAGGATGCTGAAGGCAGGATATACTGTAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 TB2_DP1_HVA22 zf-met

Protein Analysis

426

Amino Acids

48.38

Weight (kDa)

9.48

Isoelectric Point (pI)

33.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 28 - 103 1.1e-19 TB2/DP1, HVA22 family
zf-met PF12874 181 - 205 6.1e-06 Zinc-finger of C2H2 type
RVT_3 PF13456 274 - 392 1.3e-27 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017315)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g34302 FvH4_5g34302 FvH4_5g34302
prunus_persica Prupe.1G535200_v2.0.a1 Prupe.1G535200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0234881
rosa_laevigata RLG00000001207
rosa_roxburghii Rroxscaffold_3G00226680
rosa_samantha Rh7AG440600 Rh7BG413400 Rh7CG462300 Rh7DG430300
rosa_wichuraiana Rw7G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 879
AatII GACGTC 1 cut(s) 1197
AccB7I CCANNNNNTGG 1 cut(s) 803
AccI GTMKAC 1 cut(s) 865
AclWI GGATC 1 cut(s) 838
AcoI YGGCCR 1 cut(s) 1205
AcsI RAATTY 2 cut(s) 528, 1106
AcuI CTGAAG 4 cut(s) 504, 698, 704, 1275
AcyI GRCGYC 2 cut(s) 473, 1194
AfiI CCNNNNNNNGG 4 cut(s) 357, 400, 659, 803
AflII CTTAAG 1 cut(s) 20
AflIII ACRYGT 1 cut(s) 613
AgsI TTSAA 6 cut(s) 461, 589, 721, 941, 1081, 1170
AjnI CCWGG 2 cut(s) 53, 1207
AloI GAACNNNNNNTCC 2 cut(s) 332, 364
AluBI AGCT 7 cut(s) 25, 196, 390, 546, 682, 914, 1074
AluI AGCT 7 cut(s) 25, 196, 390, 546, 682, 914, 1074
Alw21I GWGCWC 2 cut(s) 553, 597
Alw26I GTCTC 1 cut(s) 910
AlwI GGATC 1 cut(s) 838
Ama87I CYCGRG 1 cut(s) 976
AoxI GGCC 5 cut(s) 56, 99, 218, 961, 1205
ApeKI GCWGC 1 cut(s) 1154
ApoI RAATTY 2 cut(s) 528, 1106
AseI ATTAAT 1 cut(s) 1038
AspS9I GGNCC 4 cut(s) 244, 303, 649, 1093
AsuHPI GGTGA 2 cut(s) 896, 1223
AvaI CYCGRG 1 cut(s) 976
AvaII GGWCC 4 cut(s) 244, 303, 649, 1093
BalI TGGCCA 1 cut(s) 1207
BbsI GAAGAC 1 cut(s) 1037
Bbv12I GWGCWC 2 cut(s) 553, 597
BbvI GCAGC 1 cut(s) 1141
BccI CCATC 3 cut(s) 780, 801, 821
BciT130I CCWGG 2 cut(s) 55, 1209
BciVI GTATCC 1 cut(s) 656
BclI TGATCA 1 cut(s) 1159
BcoDI GTCTC 1 cut(s) 910
BfaI CTAG 4 cut(s) 11, 570, 732, 917
BfmI CTRYAG 2 cut(s) 834, 1270
BfrI CTTAAG 1 cut(s) 20
BfuI GTATCC 1 cut(s) 656
BisI GCNGC 1 cut(s) 1155
BlsI GCNGC 1 cut(s) 1156
Bme1390I CCNGG 2 cut(s) 55, 1209
Bme18I GGWCC 4 cut(s) 244, 303, 649, 1093
BmeT110I CYCGRG 1 cut(s) 976
BmgT120I GGNCC 4 cut(s) 244, 303, 649, 1093
BmiI GGNNCC 3 cut(s) 429, 651, 1094
BmrFI CCNGG 2 cut(s) 55, 1209
BmrI ACTGGG 1 cut(s) 157
BmsI GCATC 1 cut(s) 1240
BmuI ACTGGG 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 1037
BplI GAGNNNNNCTC 4 cut(s) 100, 132, 535, 567
BpmI CTGGAG 1 cut(s) 106
BsaBI GATNNNNATC 1 cut(s) 667
BsaHI GRCGYC 2 cut(s) 473, 1194
BsaJI CCNNGG 4 cut(s) 268, 356, 601, 975
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 4 cut(s) 357, 400, 659, 803
Bse118I RCCGGY 1 cut(s) 469
Bse1I ACTGG 2 cut(s) 152, 477
Bse8I GATNNNNATC 1 cut(s) 667
BseBI CCWGG 2 cut(s) 55, 1209
BseDI CCNNGG 4 cut(s) 268, 356, 601, 975
BseGI GGATG 3 cut(s) 597, 812, 1255
BseJI GATNNNNATC 1 cut(s) 667
BseLI CCNNNNNNNGG 4 cut(s) 357, 400, 659, 803
BseMII CTCAG 3 cut(s) 42, 189, 306
BseNI ACTGG 2 cut(s) 152, 477
BseXI GCAGC 1 cut(s) 1141
BsgI GTGCAG 1 cut(s) 802
BshFI GGCC 5 cut(s) 58, 101, 220, 963, 1207
BsiHKAI GWGCWC 2 cut(s) 553, 597
BsiHKCI CYCGRG 1 cut(s) 976
BsiSI CCGG 1 cut(s) 470
BslFI GGGAC 3 cut(s) 398, 635, 1106
BslI CCNNNNNNNGG 4 cut(s) 357, 400, 659, 803
BsmAI GTCTC 1 cut(s) 910
BsmFI GGGAC 3 cut(s) 398, 635, 1106
BsmI GAATGC 1 cut(s) 759
BsnI GGCC 5 cut(s) 58, 101, 220, 963, 1207
BsoBI CYCGRG 1 cut(s) 976
Bsp1286I GDGCHC 2 cut(s) 553, 597
Bsp143I GATC 3 cut(s) 830, 1045, 1159
Bsp19I CCATGG 1 cut(s) 268
BspANI GGCC 5 cut(s) 58, 101, 220, 963, 1207
BspCNI CTCAG 3 cut(s) 41, 188, 307
BspLI GGNNCC 3 cut(s) 429, 651, 1094
BspPI GGATC 1 cut(s) 838
BspTI CTTAAG 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 469
BsrI ACTGG 2 cut(s) 152, 477
BssAI RCCGGY 1 cut(s) 469
BssECI CCNNGG 4 cut(s) 268, 356, 601, 975
BssMI GATC 3 cut(s) 830, 1045, 1159
BssNI GRCGYC 2 cut(s) 473, 1194
BssT1I CCWWGG 3 cut(s) 268, 356, 601
Bst2UI CCWGG 2 cut(s) 55, 1209
Bst4CI ACNGT 5 cut(s) 46, 244, 1058, 1121, 1271
Bst6I CTCTTC 1 cut(s) 680
BstACI GRCGYC 2 cut(s) 473, 1194
BstAFI CTTAAG 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 4 cut(s) 28, 175, 315, 764
BstDSI CCRYGG 1 cut(s) 268
BstF5I GGATG 3 cut(s) 597, 812, 1255
BstKTI GATC 3 cut(s) 833, 1048, 1162
BstMAI GTCTC 1 cut(s) 910
BstMBI GATC 3 cut(s) 830, 1045, 1159
BstMWI GCNNNNNNNGC 2 cut(s) 86, 193
BstNI CCWGG 2 cut(s) 55, 1209
BstNSI RCATGY 1 cut(s) 617
BstSCI CCNGG 2 cut(s) 53, 1207
BstSFI CTRYAG 2 cut(s) 834, 1270
BstV1I GCAGC 1 cut(s) 1141
BstV2I GAAGAC 1 cut(s) 1037
BstX2I RGATCY 1 cut(s) 830
BstYI RGATCY 1 cut(s) 830
BsuI GTATCC 1 cut(s) 656
BsuRI GGCC 5 cut(s) 58, 101, 220, 963, 1207
BtgI CCRYGG 1 cut(s) 268
BtgZI GCGATG 1 cut(s) 148
BtsCI GGATG 3 cut(s) 597, 812, 1255
BtsI GCAGTG 1 cut(s) 580
BtsIMutI CAGTG 2 cut(s) 580, 1117
Cac8I GCNNGC 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 469
Cfr13I GGNCC 4 cut(s) 244, 303, 649, 1093
CseI GACGC 1 cut(s) 462
CviAII CATG 4 cut(s) 269, 424, 614, 1134
DdeI CTNAG 4 cut(s) 28, 175, 315, 764
DpnI GATC 3 cut(s) 832, 1047, 1161
DpnII GATC 3 cut(s) 830, 1045, 1159
EaeI YGGCCR 1 cut(s) 1205
Eam1104I CTCTTC 1 cut(s) 680
EarI CTCTTC 1 cut(s) 680
Eco130I CCWWGG 3 cut(s) 268, 356, 601
Eco147I AGGCCT 1 cut(s) 963
Eco47I GGWCC 4 cut(s) 244, 303, 649, 1093
Eco57I CTGAAG 4 cut(s) 504, 698, 704, 1275
Eco88I CYCGRG 1 cut(s) 976
EcoO109I RGGNCCY 3 cut(s) 303, 649, 1093
EcoRII CCWGG 2 cut(s) 53, 1207
EcoT14I CCWWGG 3 cut(s) 268, 356, 601
ErhI CCWWGG 3 cut(s) 268, 356, 601
FaeI CATG 4 cut(s) 272, 427, 617, 1137
FaqI GGGAC 3 cut(s) 398, 635, 1106
FatI CATG 4 cut(s) 268, 423, 613, 1133
FbaI TGATCA 1 cut(s) 1159
FblI GTMKAC 1 cut(s) 865
Fnu4HI GCNGC 1 cut(s) 1155
FokI GGATG 3 cut(s) 584, 819, 1262
Fsp4HI GCNGC 1 cut(s) 1155
FspBI CTAG 4 cut(s) 11, 570, 732, 917
GluI GCNGC 1 cut(s) 1155
GsuI CTGGAG 1 cut(s) 106
HaeIII GGCC 5 cut(s) 58, 101, 220, 963, 1207
HapII CCGG 1 cut(s) 470
HgaI GACGC 1 cut(s) 462
Hin1I GRCGYC 2 cut(s) 473, 1194
Hin1II CATG 4 cut(s) 272, 427, 617, 1137
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 6 cut(s) 113, 179, 437, 721, 1007, 1013
HpaII CCGG 1 cut(s) 470
HphI GGTGA 2 cut(s) 896, 1223
Hpy166II GTNNAC 3 cut(s) 183, 866, 887
Hpy188I TCNGA 6 cut(s) 108, 178, 316, 484, 534, 1012
Hpy188III TCNNGA 5 cut(s) 123, 331, 843, 1043, 1220
Hpy8I GTNNAC 3 cut(s) 183, 866, 887
Hpy99I CGWCG 1 cut(s) 1199
HpyAV CCTTC 8 cut(s) 69, 257, 583, 693, 1057, 1106, 1238, 1250
HpyCH4III ACNGT 5 cut(s) 46, 244, 1058, 1121, 1271
HpyCH4IV ACGT 1 cut(s) 1194
HpyCH4V TGCA 3 cut(s) 191, 622, 783
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 193
HpyF3I CTNAG 4 cut(s) 28, 175, 315, 764
HpySE526I ACGT 1 cut(s) 1194
Hsp92I GRCGYC 2 cut(s) 473, 1194
Hsp92II CATG 4 cut(s) 272, 427, 617, 1137
Ksp22I TGATCA 1 cut(s) 1159
Kzo9I GATC 3 cut(s) 830, 1045, 1159
LmnI GCTCC 2 cut(s) 543, 592
Lsp1109I GCAGC 1 cut(s) 1141
LweI GCATC 1 cut(s) 1240
MaeI CTAG 4 cut(s) 11, 570, 732, 917
MaeII ACGT 1 cut(s) 1194
MaeIII GTNAC 3 cut(s) 110, 255, 1190
MalI GATC 3 cut(s) 832, 1047, 1161
MboI GATC 3 cut(s) 830, 1045, 1159
MboII GAAGA 3 cut(s) 663, 697, 1042
MflI RGATCY 1 cut(s) 830
MhlI GDGCHC 2 cut(s) 553, 597
MlsI TGGCCA 1 cut(s) 1207
MluNI TGGCCA 1 cut(s) 1207
MlyI GAGTC 3 cut(s) 107, 188, 1016
MmeI TCCRAC 1 cut(s) 784
MnlI CCTC 6 cut(s) 372, 528, 793, 953, 985, 1240
Mox20I TGGCCA 1 cut(s) 1207
MscI TGGCCA 1 cut(s) 1207
MseI TTAA 6 cut(s) 21, 41, 564, 818, 990, 1038
Msp20I TGGCCA 1 cut(s) 1207
MspCI CTTAAG 1 cut(s) 20
MspI CCGG 1 cut(s) 470
MspR9I CCNGG 2 cut(s) 55, 1209
Mva1269I GAATGC 1 cut(s) 759
MvaI CCWGG 2 cut(s) 55, 1209
MwoI GCNNNNNNNGC 2 cut(s) 86, 193
NcoI CCATGG 1 cut(s) 268
NdeII GATC 3 cut(s) 830, 1045, 1159
NlaIII CATG 4 cut(s) 272, 427, 617, 1137
NlaIV GGNNCC 3 cut(s) 429, 651, 1094
NmuCI GTSAC 2 cut(s) 110, 1190
NspI RCATGY 1 cut(s) 617
PceI AGGCCT 1 cut(s) 963
PciI ACATGT 1 cut(s) 613
PctI GAATGC 1 cut(s) 759
PfeI GAWTC 3 cut(s) 437, 721, 1013
PflMI CCANNNNNTGG 1 cut(s) 803
PkrI GCNGC 1 cut(s) 1156
PleI GAGTC 3 cut(s) 107, 187, 1015
PpsI GAGTC 3 cut(s) 107, 187, 1015
PpuMI RGGWCCY 3 cut(s) 303, 649, 1093
PscI ACATGT 1 cut(s) 613
PshBI ATTAAT 1 cut(s) 1038
PsiI TTATAA 1 cut(s) 879
Psp5II RGGWCCY 3 cut(s) 303, 649, 1093
Psp6I CCWGG 2 cut(s) 53, 1207
PspGI CCWGG 2 cut(s) 53, 1207
PspN4I GGNNCC 3 cut(s) 429, 651, 1094
PspPI GGNCC 4 cut(s) 244, 303, 649, 1093
PspPPI RGGWCCY 3 cut(s) 303, 649, 1093
PsuI RGATCY 1 cut(s) 830
SaqAI TTAA 6 cut(s) 21, 41, 564, 818, 990, 1038
SatI GCNGC 1 cut(s) 1155
Sau3AI GATC 3 cut(s) 830, 1045, 1159
Sau96I GGNCC 4 cut(s) 244, 303, 649, 1093
SchI GAGTC 3 cut(s) 107, 188, 1016
ScrFI CCNGG 2 cut(s) 55, 1209
SduI GDGCHC 2 cut(s) 553, 597
SfaNI GCATC 1 cut(s) 1240
SfcI CTRYAG 2 cut(s) 834, 1270
SinI GGWCC 4 cut(s) 244, 303, 649, 1093
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SseBI AGGCCT 1 cut(s) 963
SspMI CTAG 4 cut(s) 11, 570, 732, 917
StuI AGGCCT 1 cut(s) 963
StyD4I CCNGG 2 cut(s) 53, 1207
StyI CCWWGG 3 cut(s) 268, 356, 601
TaaI ACNGT 5 cut(s) 46, 244, 1058, 1121, 1271
TaiI ACGT 1 cut(s) 1197
TaqI TCGA 2 cut(s) 377, 1042
TfiI GAWTC 3 cut(s) 437, 721, 1013
Tru1I TTAA 6 cut(s) 21, 41, 564, 818, 990, 1038
Tru9I TTAA 6 cut(s) 21, 41, 564, 818, 990, 1038
TscAI CASTG 2 cut(s) 580, 1124
TseFI GTSAC 2 cut(s) 110, 1190
TseI GCWGC 1 cut(s) 1154
Tsp45I GTSAC 2 cut(s) 110, 1190
TspDTI ATGAA 5 cut(s) 312, 1005, 1076, 1122, 1220
TspRI CASTG 2 cut(s) 580, 1124
Van91I CCANNNNNTGG 1 cut(s) 803
Vha464I CTTAAG 1 cut(s) 20
VpaK11BI GGWCC 4 cut(s) 244, 303, 649, 1093
VspI ATTAAT 1 cut(s) 1038
XapI RAATTY 2 cut(s) 528, 1106
XceI RCATGY 1 cut(s) 617
XcmI CCANNNNNNNNNTGG 1 cut(s) 804
XmiI GTMKAC 1 cut(s) 865
XspI CTAG 4 cut(s) 11, 570, 732, 917
ZraI GACGTC 1 cut(s) 1195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.