FvH4_5g38460

Domain of unknown function (DUF4750)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0019621
Physical Location & Seq
Forward (+)
28440505 .. 28442086
1582 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38460.t1

Sequence Viewer

Length: 246 bp
ATGTCTCTTTCTTACTGGGACTATCTCACCCTTCTTCTTCTTCGTCCTCTCCTCGCTATCGCACTCGTCGTCTTGTTCATTGCTTCCGGTTGGTATTTGGCTTGGAAGCTGGTATTGGTTCATGTTCCTCTTGTTCAAGAGATTTTCGGTTTGAAAAAGAAGACCGTCGTGCCCAAACCCGAAACTCGCGGTCGATTTTCTAAGTTTTACAGTACATTGGAAACACAGAATTCAGCTTCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4750

Protein Analysis

82

Amino Acids

9.3

Weight (kDa)

9.92

Isoelectric Point (pI)

30.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4750 PF15938 6 - 56 9.3e-24 Domain of unknown function (DUF4750)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019621)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36380
fragaria_vesca FvH4_5g38460
malus_domestica MD15G1359700.v1.1
prunus_persica Prupe.1G507400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0240501
rosa_roxburghii Rroxscaffold_3G00219930
rosa_wichuraiana Rw7G041150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 189
AciI CCGC 1 cut(s) 189
AcsI RAATTY 1 cut(s) 229
AfaI GTAC 1 cut(s) 214
AgsI TTSAA 2 cut(s) 137, 154
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AluBI AGCT 2 cut(s) 109, 236
AluI AGCT 2 cut(s) 109, 236
Alw26I GTCTC 1 cut(s) 9
ApoI RAATTY 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 9
BmrI ACTGGG 1 cut(s) 25
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 20
Bse3DI GCAATG 1 cut(s) 78
BseMI GCAATG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 41
BseSI GKGCMC 1 cut(s) 174
Bsh1236I CGCG 1 cut(s) 189
Bsh1285I CGRYCG 1 cut(s) 193
BsiEI CGRYCG 1 cut(s) 193
BsiSI CCGG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 174
BspACI CCGC 1 cut(s) 189
BspFNI CGCG 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 78
BsrI ACTGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 166, 212
BstDEI CTNAG 1 cut(s) 201
BstFNI CGCG 1 cut(s) 189
BstMAI GTCTC 1 cut(s) 9
BstMCI CGRYCG 1 cut(s) 193
BstSLI GKGCMC 1 cut(s) 174
BstUI CGCG 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 213
CviAII CATG 1 cut(s) 122
CviJI RGCY 3 cut(s) 101, 109, 236
CviKI_1 RGCY 3 cut(s) 101, 109, 236
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 229
FaeI CATG 1 cut(s) 125
FaiI YATR 1 cut(s) 123
FaqI GGGAC 1 cut(s) 32
FatI CATG 1 cut(s) 121
HapII CCGG 1 cut(s) 87
Hin1II CATG 1 cut(s) 125
HpaII CCGG 1 cut(s) 87
HphI GGTGA 1 cut(s) 19
Hpy188III TCNNGA 1 cut(s) 137
Hpy99I CGWCG 2 cut(s) 71, 170
HpyAV CCTTC 1 cut(s) 41
HpyCH4III ACNGT 2 cut(s) 166, 212
HpyF3I CTNAG 1 cut(s) 201
Hsp92II CATG 1 cut(s) 125
LpnPI CCDG 2 cut(s) 95, 100
MboII GAAGA 4 cut(s) 26, 29, 32, 172
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 1 cut(s) 229
MnlI CCTC 3 cut(s) 57, 62, 138
MspI CCGG 1 cut(s) 87
MvnI CGCG 1 cut(s) 189
NlaIII CATG 1 cut(s) 125
PcsI WCGNNNNNNNCGW 1 cut(s) 66
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SduI GDGCHC 1 cut(s) 174
SetI ASST 2 cut(s) 111, 238
Sse9I AATT 1 cut(s) 229
SsiI CCGC 1 cut(s) 189
TaaI ACNGT 2 cut(s) 166, 212
TaqI TCGA 1 cut(s) 193
TasI AATT 1 cut(s) 229
TatI WGTACW 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 67, 110
XapI RAATTY 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.