Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0019621

Physical Location & Seq

Genomic Coordinates Reverse (-)

2110293 .. 2111519

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00219930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGTCTCTTTCTACCTGGGACTATCTCACCCTTCTCCTTCTTCGTCCTCTCTTCGCAATCTCACTCGTCGTCTTGTTCATTGCTTCCGGTTGGTATTTGGCGTGGAAGCTGGTTTTGGTTCATGTTCCTCTTGTTCAAGATATTTTCGGGTTGAAAAAGAAGCCCGTCAATCCCAAACCCGCAACTCGTGGACGATTTTCGAAGTTTTACAGTACATTGGAAACCCAGAATTCAGCTTCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4750

Protein Analysis

81

Amino Acids

9.22

Weight (kDa)

10.17

Isoelectric Point (pI)

26.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4750	PF15938	6 - 58	9.7e-24	Domain of unknown function (DUF4750)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36380
fragaria_vesca	FvH4_5g38460
malus_domestica	MD15G1359700.v1.1
prunus_persica	Prupe.1G507400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0240501
rosa_roxburghii	Rroxscaffold_3G00219930
rosa_wichuraiana	Rw7G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	229
AfaI	GTAC	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	137, 154
AjnI	CCWGG	1 cut(s)	14
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	2 cut(s)	109, 236
AluI	AGCT	2 cut(s)	109, 236
Alw26I	GTCTC	1 cut(s)	9
ApoI	RAATTY	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	19
AsuII	TTCGAA	1 cut(s)	200
BauI	CACGAG	1 cut(s)	186
BciT130I	CCWGG	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	16
Bpu14I	TTCGAA	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	86
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	15
BseMI	GCAATG	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	32
Bsp119I	TTCGAA	1 cut(s)	200
BspACI	CCGC	1 cut(s)	180
BspT104I	TTCGAA	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	15
BssSI	CACGAG	1 cut(s)	186
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	56
BstBI	TTCGAA	1 cut(s)	200
BstMAI	GTCTC	1 cut(s)	9
BstNI	CCWGG	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	3 cut(s)	109, 163, 236
CviKI_1	RGCY	3 cut(s)	109, 163, 236
CviQI	GTAC	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	14
FaeI	CATG	1 cut(s)	125
FaiI	YATR	1 cut(s)	123
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	1 cut(s)	121
FauI	CCCGC	1 cut(s)	187
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	1 cut(s)	125
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	191
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	2 cut(s)	41, 47
HpyCH4III	ACNGT	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	125
LpnPI	CCDG	4 cut(s)	28, 95, 100, 239
MboII	GAAGA	2 cut(s)	32, 43
MluCI	AATT	1 cut(s)	229
MnlI	CCTC	2 cut(s)	57, 138
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	16
NlaIII	CATG	1 cut(s)	125
NspV	TTCGAA	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
ScrFI	CCNGG	1 cut(s)	16
SetI	ASST	3 cut(s)	17, 111, 238
SfuI	TTCGAA	1 cut(s)	200
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	212
TaqI	TCGA	1 cut(s)	200
TasI	AATT	1 cut(s)	229
TatI	WGTACW	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	67, 110
XapI	RAATTY	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.