Rw7G041150

Domain of unknown function (DUF4750)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0019621
Physical Location & Seq
Forward (+)
64104637 .. 64105989
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041150.1

Sequence Viewer

Length: 246 bp
ATGTCTCTTTCTACCTGGGACTATCTCACCCTTCTCCTTCTTCGCCCTCTCTTCGCAATCGCACTCGTCGTCTTGTTCATTGCTTCCGGTTGGTATTTGGCGTGGAAGCTAGTTTTGGTTCATGTTCCTCTTGTTCAAGAGATTTTCGGGTTGAAAAAGAAGCCCGTCAATCCCAAACCCGCAACTCGTGGTCGATTTTCCAAGTTTTACAGTACATGGGAAACCCAGAATTCAGCTTCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4750

Protein Analysis

81

Amino Acids

9.3

Weight (kDa)

9.9

Isoelectric Point (pI)

29.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4750 PF15938 6 - 58 1.6e-24 Domain of unknown function (DUF4750)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019621)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36380
fragaria_vesca FvH4_5g38460
malus_domestica MD15G1359700.v1.1
prunus_persica Prupe.1G507400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0240501
rosa_roxburghii Rroxscaffold_3G00219930
rosa_wichuraiana Rw7G041150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 180
AcsI RAATTY 1 cut(s) 229
AfaI GTAC 1 cut(s) 214
AgsI TTSAA 2 cut(s) 137, 154
AjnI CCWGG 1 cut(s) 14
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AluBI AGCT 2 cut(s) 109, 236
AluI AGCT 2 cut(s) 109, 236
Alw26I GTCTC 1 cut(s) 9
AlwNI CAGNNNCTG 1 cut(s) 239
ApoI RAATTY 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 19
BauI CACGAG 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 15
BsaWI WCCGGW 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 78
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 15
BseMI GCAATG 1 cut(s) 78
BsiSI CCGG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 32
BspACI CCGC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 15
BssSI CACGAG 1 cut(s) 186
Bst2BI CACGAG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 56
BstMAI GTCTC 1 cut(s) 9
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 14
CaiI CAGNNNCTG 1 cut(s) 239
Csp6I GTAC 1 cut(s) 213
CviAII CATG 2 cut(s) 122, 216
CviJI RGCY 3 cut(s) 109, 163, 236
CviKI_1 RGCY 3 cut(s) 109, 163, 236
CviQI GTAC 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 14
FaeI CATG 2 cut(s) 125, 219
FaiI YATR 2 cut(s) 123, 217
FaqI GGGAC 1 cut(s) 32
FatI CATG 2 cut(s) 121, 215
FauI CCCGC 1 cut(s) 187
FspBI CTAG 1 cut(s) 110
HapII CCGG 1 cut(s) 87
Hin1II CATG 2 cut(s) 125, 219
HpaII CCGG 1 cut(s) 87
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 1 cut(s) 137
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 41, 47
HpyCH4III ACNGT 1 cut(s) 212
Hsp92II CATG 2 cut(s) 125, 219
LpnPI CCDG 3 cut(s) 28, 100, 239
MaeI CTAG 1 cut(s) 110
MboII GAAGA 2 cut(s) 32, 43
MluCI AATT 1 cut(s) 229
MnlI CCTC 2 cut(s) 57, 138
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
NlaIII CATG 2 cut(s) 125, 219
PcsI WCGNNNNNNNCGW 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PstNI CAGNNNCTG 1 cut(s) 239
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
ScrFI CCNGG 1 cut(s) 16
SetI ASST 3 cut(s) 17, 111, 238
Sse9I AATT 1 cut(s) 229
SsiI CCGC 1 cut(s) 180
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 1 cut(s) 212
TaqI TCGA 1 cut(s) 193
TasI AATT 1 cut(s) 229
TatI WGTACW 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 67, 110
XapI RAATTY 1 cut(s) 229
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.