MD15G1359700.v1.1

Domain of unknown function (DUF4750)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0019621
Physical Location & Seq
Reverse (-)
43367962 .. 43370688
2727 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1359700.v1.1.491

Sequence Viewer

Length: 375 bp
ATGTCTCTTTCCTACTGGGACTACCTCAGCCTCCTCATCCTCCGTCCTCTTTTTGCCATCACAGTCGTCTTCTTGTTTATCTCAGTTGGTTGGTGGCTGGCGTGGAAGCTGGTTTTGGTTCACGTTCCTCTGGTTCAAGAGATTTTCGGGTTGCGAAAAAAGCCGGTCCAGCCCAAACCCCCGACTCGTCGCTTTTCTAAAATTTACAACACCATTGAAGCCCACAATTCAGCTTCTAAATGGGGATCTGATCGTATTACAGACTCGGTAGTTTCCTGTGTGTTTGGAGGGCAATCGACTGCGAACACCAAAGTTTGTTTCTTTGATGCAACAAACAAATTGTCATTGGAAATTCAGGTACTTGAACGCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4750

Protein Analysis

125

Amino Acids

14.2

Weight (kDa)

9.64

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4750 PF15938 6 - 58 4.3e-24 Domain of unknown function (DUF4750)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019621)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36380
fragaria_vesca FvH4_5g38460
malus_domestica MD15G1359700.v1.1
prunus_persica Prupe.1G507400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0240501
rosa_roxburghii Rroxscaffold_3G00219930
rosa_wichuraiana Rw7G041150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 253
AcsI RAATTY 2 cut(s) 201, 351
AfaI GTAC 1 cut(s) 360
AgsI TTSAA 3 cut(s) 137, 218, 365
AjuI GAANNNNNNNTTGG 4 cut(s) 98, 130, 302, 334
AluBI AGCT 2 cut(s) 109, 233
AluI AGCT 2 cut(s) 109, 233
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 253
ApoI RAATTY 2 cut(s) 201, 351
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspS9I GGNCC 1 cut(s) 166
AvaII GGWCC 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 61
BbvCI CCTCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 316
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 61
Bpu10I CCTNAGC 1 cut(s) 26
Bse118I RCCGGY 1 cut(s) 163
Bse1I ACTGG 2 cut(s) 20, 370
BseGI GGATG 1 cut(s) 36
BseMII CTCAG 2 cut(s) 40, 96
BseNI ACTGG 2 cut(s) 20, 370
BseRI GAGGAG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 32
Bsp143I GATC 2 cut(s) 245, 250
BspCNI CTCAG 2 cut(s) 39, 95
BspPI GGATC 1 cut(s) 253
BsrFI RCCGGY 1 cut(s) 163
BsrI ACTGG 2 cut(s) 20, 370
BssAI RCCGGY 1 cut(s) 163
BssMI GATC 2 cut(s) 245, 250
Bst4CI ACNGT 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 26, 82
BstF5I GGATG 1 cut(s) 36
BstKTI GATC 2 cut(s) 248, 253
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 245, 250
BstMWI GCNNNNNNNGC 2 cut(s) 160, 169
BstV2I GAAGAC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
BtsCI GGATG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 99
Cfr10I RCCGGY 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 359
CviJI RGCY 7 cut(s) 30, 97, 109, 163, 172, 221, 233
CviKI_1 RGCY 7 cut(s) 30, 97, 109, 163, 172, 221, 233
CviQI GTAC 1 cut(s) 359
DdeI CTNAG 2 cut(s) 26, 82
DpnI GATC 2 cut(s) 247, 252
DpnII GATC 2 cut(s) 245, 250
Eco47I GGWCC 1 cut(s) 166
FaqI GGGAC 1 cut(s) 32
FokI GGATG 1 cut(s) 23
HapII CCGG 1 cut(s) 164
HinfI GANTC 2 cut(s) 184, 263
HpaII CCGG 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 1 cut(s) 192
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 169
HpyF3I CTNAG 2 cut(s) 26, 82
HpySE526I ACGT 1 cut(s) 123
Kzo9I GATC 2 cut(s) 245, 250
LpnPI CCDG 7 cut(s) 83, 95, 116, 177, 182, 289, 341
LweI GCATC 1 cut(s) 316
MaeII ACGT 1 cut(s) 123
MalI GATC 2 cut(s) 247, 252
MboI GATC 2 cut(s) 245, 250
MboII GAAGA 1 cut(s) 61
MflI RGATCY 1 cut(s) 245
MluCI AATT 4 cut(s) 201, 226, 338, 351
MlyI GAGTC 2 cut(s) 178, 257
MnlI CCTC 7 cut(s) 35, 41, 44, 50, 57, 138, 281
MspI CCGG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 160, 169
NdeII GATC 2 cut(s) 245, 250
PleI GAGTC 2 cut(s) 178, 257
PpsI GAGTC 2 cut(s) 178, 257
PspPI GGNCC 1 cut(s) 166
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
Sau3AI GATC 2 cut(s) 245, 250
Sau96I GGNCC 1 cut(s) 166
SchI GAGTC 2 cut(s) 178, 257
SetI ASST 5 cut(s) 27, 111, 126, 235, 360
SfaNI GCATC 1 cut(s) 316
SinI GGWCC 1 cut(s) 166
Sse9I AATT 4 cut(s) 201, 226, 338, 351
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 296
TasI AATT 4 cut(s) 201, 226, 338, 351
TspGWI ACGGA 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 2 cut(s) 201, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.