FvH4_5g39110

Histone-lysine N-methyltransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
28866410 .. 28873052
6643 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g39110.t4

Sequence Viewer

Length: 2643 bp
ATGATGATGTCCAAAGCAACTGACTCTGCAACTAAACTCAAAAAATCACATGGAGATGTACCGGGAGATACTGTAGGCTTGGCACAAAAGATGTATCAGCTTAAGAAGCAAATTCAGGCAGAGAGAGTGATGTCAGTGAAGGAAAAAATCGAGCAGAATAGGAAGAAGCTAGAAGGTTACGTTTCAGAAATTTCATCAATAATTTCAAGAGAAGTTGAGCTAAATGGGAGCTCCAGCTTGCTTAATTCAAGAATTCAACATCCTCCCTGCAAATTCAGTGGCTTTTCTAAAGGATTTGGTGATAAAGATTATAGTAACAATGAAGAGGAGTTACTCTCATCAAGTATTGAGCTTCCAAAAGCTCACAAGATTGATCCTTATACAACTTGGATATGGTTGGACAGAAATCAGAGAATGGCTGAGGACCAATCTGTAGTTGGGAGGAGGCAAATTTACTACGACAAAGAACATGGCGTTGAAGCTCTAGTCTACAGTGACACTGATGATGAGATGACAGAACCTGAAGAAGTGAAGCGTGCATTTTCTGGAGGAGAAGACCGAATTCTGTTGATGGCCTTTCAGGAGCATGGGACAGGAGAAGAAGTAACAAAAGCTGTAAGCCAGTTTATTGGAGCCACCACTTCGGAAATCCAGGAAAGGTACATTACAATCAAGGAGCGGGTCTGTGAGAAACGTGAATCAAAAGATTCTGGAGAATCTGGATCAAATAGGCACATTTTTCTTGATAAGAGTCTCAGTGCTGCATTAGATTCTTTTGATAACCTTTTCTGTCGCCGTTGCCTGATTTTCGATTGCCGTCTGCATGGATGTTCTCAACCTCTAATCTATCCTAGTGAAAAGCAGATGCATTGGTCAGAACATGATGAGGATGAGAAGCCTTGCAGTGATCAATGTTACCTTAGGTTAAAGGCAGTTGAGAATCTGGTGGAAGGTTCACATAATAATACTCTGCCCAGGACCAATGTAACAAATTCACAGAGAGAAAGTGCTCCAACATCATCCGTTACAGAGATTATACGTGATGAAAATTACATTCCTGGAAAAGATGAGGCTGTCACTTCAGAACGTATTCATAGATCAGATGTCTTTACAGGAGCTTTAGGTTTGGATACAGATATGATGATGACTCACAATGAAAACACAGGGAAAAGGAAGGTTGTAGAGTACACTGATAAAGAGGCCCATGACCAAACTATACTGCCGGATGATTTGGAGGGGTCTTCCAAGAGACAGAAGAGATTAGATGTCTTGCATTTAGTAACTGGTACTAGTACACCAATCGCGGTTCATGATCACTCAACCAGTTCTGAACATGGGACCTCAGATGCTGGTTTACCCAATAAAAATGAACTTGAACTGGCCAACAAAAAATCCACCGGACATACTTCAAAGGAACTTGTATGTTTTGGTAGTTCTTCCTGCGATGAATCTATGGATGATGTGAAGGATGAGCCAAAAGATGTAATAGAGGTACTGAAGCAACCATCCAAATCTACAGAAGTCCAAGTTGAAAAGAAGTGTGGCAGCAGCTCTGAGTGGAAGGCAGTAGAGAAAGAATTATACATGAAGGGGTTAGAGATATTCGGGAGAAACAGTTGCCTCATAGCCAGGAACTTACTTTCTGGCTTCAAGACTTGCTTGGAAGTGTCCATTTTCATGCATGATGCTGAAGCTTCAATGCCTAATAGATCTGTTGGATTCATGGAAGACAATGGCAAAGCTGACACGGATCAGAGTGAACACGAGATGCGGACAAAGTCACGATCATTTCGTAGAAGAGGCAAAGCACGGAGGCTTAAATATTCTTGGAAGTCTGCTGGTCACCCATCAGTCTGGAAAAGGATTGCTGATGGCAAAAACCAGTCCCGCAAACAATATATACCATGTGGGTGCCAGTCTACATGTGGAAGGCAATGTTCTTGTCTGCAAAATGGAACCTGCTGTGAAAAATATTGTGGATGCTCAAAGAGCTGCAAAAATAGGTTCAGGGGATGCCACTGTGCAAAAAGTCAATGCAGAAGTCGGCAGTGCCCATGCTTTGCCGCAGATCGTGAATGTGACCCGGATGTCTGTCGCAATTGTTGGGTTAGTTGTGGGGACAGTTCATTAGGCGAGCCACCAAAACAAGGTGATAGTCAATGTGGAAACATGAGGCTTCTTTTAAGGCAACAACAAAGGATTCTCTTGGGTAAATCTGATGTTGCTGGATGGGGAGCCTTTTTAAAGAACCCTGTAAACAAAAATGATTATCTTGGAGAATATACTGGTGAACTTATCTCCCATGAGGAAGCAGACAGACGTGGGAAGATTTACGATCGTGCAGACTCATCATTCCTTTTTGACTTGAATGATCAGTGGGTCCTGGATGCTTATCGAAAAGGAGACAAGCTTAAATTTGCAAACCACTCGAAGAAACCTAACTGTCATGCAAAGGTAATGCTGGTGGCGGGAGATCACCGAGTAGGCATATTTGCCAAGGAGCATATTGATGCTGGTGAGGAGATCTTCTATGATTATTGTTACCCACCAGAAACAGAAATCCCATGGGCTCAAGCTGAGGGTACAAAGAGGGATGATTCATCTGTCTCCCAAGTCAGAGCAAAGAAACACCAATCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005911 GO:0006139 GO:0006325 GO:0006342 GO:0006349 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0030054 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048316 GO:0048317 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070734 GO:0071514 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090568 GO:0090698 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:2000014 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

881

Amino Acids

99.31

Weight (kDa)

6.45

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HTH_CLF_N PF25996 52 - 96 1.5e-19 Histone-lysine N-methyltransferase CLF, N-terminal HTH domain
preSET_CXC PF18264 542 - 573 6.9e-08 CXC domain
SET PF00856 614 - 717 7.6e-20 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2087
Acc36I ACCTGC 1 cut(s) 1967
AccB1I GGYRCC 1 cut(s) 1911
AccBSI CCGCTC 1 cut(s) 679
AccI GTMKAC 2 cut(s) 489, 1919
AccII CGCG 1 cut(s) 1304
AciI CCGC 6 cut(s) 679, 1304, 1771, 1888, 2064, 2468
AclWI GGATC 3 cut(s) 368, 730, 1758
AcoI YGGCCR 1 cut(s) 1380
AcsI RAATTY 8 cut(s) 111, 189, 252, 272, 450, 561, 991, 2414
AcuI CTGAAG 4 cut(s) 543, 1065, 1517, 1710
AfaI GTAC 7 cut(s) 60, 662, 1187, 1288, 1294, 1494, 2584
AfiI CCNNNNNNNGG 1 cut(s) 2147
AflII CTTAAG 1 cut(s) 101
AflIII ACRYGT 1 cut(s) 1922
AhlI ACTAGT 1 cut(s) 1289
AjiI CACGTC 1 cut(s) 2321
AjnI CCWGG 5 cut(s) 651, 974, 1057, 1628, 2382
Alw21I GWGCWC 2 cut(s) 233, 1012
Alw26I GTCTC 4 cut(s) 758, 1243, 2397, 2611
AlwI GGATC 3 cut(s) 368, 730, 1758
AlwNI CAGNNNCTG 2 cut(s) 521, 1349
AoxI GGCC 3 cut(s) 573, 1200, 1380
ApeKI GCWGC 4 cut(s) 761, 1545, 1548, 1992
ApoI RAATTY 8 cut(s) 111, 189, 252, 272, 450, 561, 991, 2414
Asp700I GAANNNNTTC 1 cut(s) 1089
AspS9I GGNCC 5 cut(s) 424, 978, 1201, 1338, 2380
AsuC2I CCSGG 2 cut(s) 63, 2084
AsuHPI GGTGA 6 cut(s) 311, 1835, 2162, 2300, 2468, 2528
AvaII GGWCC 4 cut(s) 424, 978, 1338, 2380
AxyI CCTNAGG 1 cut(s) 920
BaeGI GKGCMC 1 cut(s) 2054
BalI TGGCCA 1 cut(s) 1382
BanI GGYRCC 1 cut(s) 1911
BanII GRGCYC 2 cut(s) 233, 2572
BarI GAAGNNNNNNTAC 2 cut(s) 315, 347
BauI CACGAG 1 cut(s) 1763
BbsI GAAGAC 3 cut(s) 561, 1233, 1734
Bbv12I GWGCWC 2 cut(s) 233, 1012
BbvCI CCTCAGC 2 cut(s) 420, 2577
BbvI GCAGC 4 cut(s) 748, 1557, 1560, 1979
BccI CCATC 5 cut(s) 565, 1513, 1855, 1865, 2223
BceAI ACGGC 2 cut(s) 780, 801
BcgI CGANNNNNNTGC 2 cut(s) 2409, 2443
BciT130I CCWGG 5 cut(s) 653, 976, 1059, 1630, 2384
BciVI GTATCC 1 cut(s) 1123
BclI TGATCA 3 cut(s) 907, 1312, 2371
BcnI CCSGG 2 cut(s) 63, 2084
BcoDI GTCTC 4 cut(s) 758, 1243, 2397, 2611
BcuI ACTAGT 1 cut(s) 1289
BfaI CTAG 4 cut(s) 170, 485, 852, 1290
BfmI CTRYAG 4 cut(s) 72, 432, 490, 1515
BfrI CTTAAG 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 1967
BfuI GTATCC 1 cut(s) 1123
BglII AGATCT 2 cut(s) 1709, 2523
BisI GCNGC 5 cut(s) 762, 1546, 1549, 1993, 2064
BlsI GCNGC 5 cut(s) 763, 1547, 1550, 1994, 2065
Bme1390I CCNGG 7 cut(s) 63, 653, 976, 1059, 1630, 2084, 2384
Bme18I GGWCC 4 cut(s) 424, 978, 1338, 2380
BmgBI CACGTC 1 cut(s) 2321
BmgT120I GGNCC 5 cut(s) 424, 978, 1201, 1338, 2380
BmiI GGNNCC 6 cut(s) 634, 1339, 1913, 1957, 2236, 2381
BmrFI CCNGG 7 cut(s) 63, 653, 976, 1059, 1630, 2084, 2384
BmsI GCATC 8 cut(s) 855, 1336, 1675, 1758, 1970, 2003, 2377, 2500
BpiI GAAGAC 3 cut(s) 561, 1233, 1734
BplI GAGNNNNNCTC 2 cut(s) 320, 352
BpmI CTGGAG 3 cut(s) 217, 567, 732
Bpu10I CCTNAGC 2 cut(s) 420, 2577
BpuEI CTTGAG 1 cut(s) 2556
BpuMI CCSGG 2 cut(s) 63, 2084
BsaAI YACGTR 1 cut(s) 1040
BsaBI GATNNNNATC 1 cut(s) 2391
BsaJI CCNNGG 3 cut(s) 974, 2496, 2564
BsaWI WCCGGW 1 cut(s) 1397
BsaXI ACNNNNNCTCC 6 cut(s) 57, 87, 588, 618, 1600, 1630
Bsc4I CCNNNNNNNGG 1 cut(s) 2147
Bse1I ACTGG 7 cut(s) 622, 1288, 1323, 1383, 1882, 1915, 2290
Bse21I CCTNAGG 1 cut(s) 920
Bse3DI GCAATG 1 cut(s) 1940
Bse8I GATNNNNATC 1 cut(s) 2391
BseBI CCWGG 5 cut(s) 653, 976, 1059, 1630, 2384
BseDI CCNNGG 3 cut(s) 974, 2496, 2564
BseJI GATNNNNATC 1 cut(s) 2391
BseLI CCNNNNNNNGG 1 cut(s) 2147
BseMI GCAATG 1 cut(s) 1940
BseMII CTCAG 5 cut(s) 411, 769, 1356, 1545, 2568
BseNI ACTGG 7 cut(s) 622, 1288, 1323, 1383, 1882, 1915, 2290
BseRI GAGGAG 4 cut(s) 341, 457, 564, 2534
BseSI GKGCMC 1 cut(s) 2054
BseXI GCAGC 4 cut(s) 748, 1557, 1560, 1979
BsgI GTGCAG 1 cut(s) 2361
Bsh1236I CGCG 1 cut(s) 1304
Bsh1285I CGRYCG 1 cut(s) 2338
BshFI GGCC 3 cut(s) 575, 1202, 1382
BshNI GGYRCC 1 cut(s) 1911
BsiEI CGRYCG 1 cut(s) 2338
BsiHKAI GWGCWC 2 cut(s) 233, 1012
BsiSI CCGG 4 cut(s) 62, 1223, 1398, 2084
BslFI GGGAC 4 cut(s) 604, 1351, 1870, 2132
BslI CCNNNNNNNGG 1 cut(s) 2147
BsmAI GTCTC 4 cut(s) 758, 1243, 2397, 2611
BsmFI GGGAC 4 cut(s) 604, 1351, 1870, 2132
BsnI GGCC 3 cut(s) 575, 1202, 1382
Bsp1286I GDGCHC 4 cut(s) 233, 1012, 2054, 2572
Bsp19I CCATGG 1 cut(s) 2564
BspACI CCGC 6 cut(s) 679, 1304, 1771, 1888, 2064, 2468
BspANI GGCC 3 cut(s) 575, 1202, 1382
BspCNI CTCAG 5 cut(s) 412, 768, 1355, 1546, 2569
BspFNI CGCG 1 cut(s) 1304
BspHI TCATGA 1 cut(s) 1309
BspLI GGNNCC 6 cut(s) 634, 1339, 1913, 1957, 2236, 2381
BspMI ACCTGC 1 cut(s) 1967
BspPI GGATC 3 cut(s) 368, 730, 1758
BspT107I GGYRCC 1 cut(s) 1911
BspTI CTTAAG 1 cut(s) 101
BsrBI CCGCTC 1 cut(s) 679
BsrDI GCAATG 1 cut(s) 1940
BsrI ACTGG 7 cut(s) 622, 1288, 1323, 1383, 1882, 1915, 2290
BssECI CCNNGG 3 cut(s) 974, 2496, 2564
BssSI CACGAG 1 cut(s) 1763
BssT1I CCWWGG 2 cut(s) 2496, 2564
Bst2BI CACGAG 1 cut(s) 1763
Bst2UI CCWGG 5 cut(s) 653, 976, 1059, 1630, 2384
Bst4CI ACNGT 6 cut(s) 73, 494, 1616, 2021, 2123, 2444
Bst6I CTCTTC 3 cut(s) 318, 1250, 1792
BstAFI CTTAAG 1 cut(s) 101
BstBAI YACGTR 1 cut(s) 1040
BstC8I GCNNGC 3 cut(s) 239, 537, 2135
BstDEI CTNAG 6 cut(s) 420, 755, 920, 1342, 1554, 2577
BstDSI CCRYGG 1 cut(s) 2564
BstEII GGTNACC 1 cut(s) 1841
BstFNI CGCG 1 cut(s) 1304
BstMAI GTCTC 4 cut(s) 758, 1243, 2397, 2611
BstMCI CGRYCG 1 cut(s) 2338
BstMWI GCNNNNNNNGC 2 cut(s) 106, 1989
BstNI CCWGG 5 cut(s) 653, 976, 1059, 1630, 2384
BstNSI RCATGY 1 cut(s) 1926
BstPI GGTNACC 1 cut(s) 1841
BstSCI CCNGG 7 cut(s) 61, 651, 974, 1057, 1628, 2082, 2382
BstSFI CTRYAG 4 cut(s) 72, 432, 490, 1515
BstSLI GKGCMC 1 cut(s) 2054
BstUI CGCG 1 cut(s) 1304
BstV1I GCAGC 4 cut(s) 748, 1557, 1560, 1979
BstV2I GAAGAC 3 cut(s) 561, 1233, 1734
BstX2I RGATCY 2 cut(s) 1709, 2523
BstXI CCANNNNNNTGG 2 cut(s) 629, 1854
BstYI RGATCY 2 cut(s) 1709, 2523
Bsu36I CCTNAGG 1 cut(s) 920
BsuI GTATCC 1 cut(s) 1123
BsuRI GGCC 3 cut(s) 575, 1202, 1382
BtgI CCRYGG 1 cut(s) 2564
BtgZI GCGATG 1 cut(s) 1458
BtrI CACGTC 1 cut(s) 2321
BtsI GCAGTG 2 cut(s) 910, 2054
BveI ACCTGC 1 cut(s) 1967
Cac8I GCNNGC 3 cut(s) 239, 537, 2135
CaiI CAGNNNCTG 2 cut(s) 521, 1349
CciI TCATGA 1 cut(s) 1309
Cfr13I GGNCC 5 cut(s) 424, 978, 1201, 1338, 2380
Csp6I GTAC 7 cut(s) 59, 661, 1186, 1287, 1293, 1493, 2583
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviQI GTAC 7 cut(s) 59, 661, 1186, 1287, 1293, 1493, 2583
DdeI CTNAG 6 cut(s) 420, 755, 920, 1342, 1554, 2577
DraI TTTAAA 1 cut(s) 2244
DrdI GACNNNNNNGTC 1 cut(s) 2087
DseDI GACNNNNNNGTC 1 cut(s) 2087
EaeI YGGCCR 1 cut(s) 1380
Eam1104I CTCTTC 3 cut(s) 318, 1250, 1792
EarI CTCTTC 3 cut(s) 318, 1250, 1792
Ecl136II GAGCTC 1 cut(s) 231
Eco130I CCWWGG 2 cut(s) 2496, 2564
Eco24I GRGCYC 2 cut(s) 233, 2572
Eco47I GGWCC 4 cut(s) 424, 978, 1338, 2380
Eco53kI GAGCTC 1 cut(s) 231
Eco57I CTGAAG 4 cut(s) 543, 1065, 1517, 1710
Eco81I CCTNAGG 1 cut(s) 920
Eco91I GGTNACC 1 cut(s) 1841
EcoICRI GAGCTC 1 cut(s) 231
EcoO109I RGGNCCY 2 cut(s) 1338, 2380
EcoO65I GGTNACC 1 cut(s) 1841
EcoRI GAATTC 2 cut(s) 252, 561
EcoRII CCWGG 5 cut(s) 651, 974, 1057, 1628, 2382
EcoT14I CCWWGG 2 cut(s) 2496, 2564
EcoT22I ATGCAT 2 cut(s) 870, 1683
EcoT38I GRGCYC 2 cut(s) 233, 2572
ErhI CCWWGG 2 cut(s) 2496, 2564
FalI AAGNNNNNCTT 2 cut(s) 1643, 1675
FaqI GGGAC 4 cut(s) 604, 1351, 1870, 2132
FauI CCCGC 3 cut(s) 672, 1895, 2461
FbaI TGATCA 3 cut(s) 907, 1312, 2371
FblI GTMKAC 2 cut(s) 489, 1919
Fnu4HI GCNGC 5 cut(s) 762, 1546, 1549, 1993, 2064
FriOI GRGCYC 2 cut(s) 233, 2572
Fsp4HI GCNGC 5 cut(s) 762, 1546, 1549, 1993, 2064
FspBI CTAG 4 cut(s) 170, 485, 852, 1290
GluI GCNGC 5 cut(s) 762, 1546, 1549, 1993, 2064
GsuI CTGGAG 3 cut(s) 217, 567, 732
HaeIII GGCC 3 cut(s) 575, 1202, 1382
HapII CCGG 4 cut(s) 62, 1223, 1398, 2084
HindIII AAGCTT 2 cut(s) 1692, 2408
HpaII CCGG 4 cut(s) 62, 1223, 1398, 2084
HphI GGTGA 6 cut(s) 311, 1835, 2162, 2300, 2468, 2528
Hpy166II GTNNAC 9 cut(s) 490, 956, 1188, 1295, 1355, 1760, 1920, 2257, 2291
Hpy8I GTNNAC 9 cut(s) 490, 956, 1188, 1295, 1355, 1760, 1920, 2257, 2291
HpyAV CCTTC 8 cut(s) 133, 167, 944, 1168, 1459, 1555, 1582, 1923
HpyCH4III ACNGT 6 cut(s) 73, 494, 1616, 2021, 2123, 2444
HpyCH4IV ACGT 5 cut(s) 180, 694, 1039, 1087, 2320
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 1989
HpyF3I CTNAG 6 cut(s) 420, 755, 920, 1342, 1554, 2577
HpySE526I ACGT 5 cut(s) 180, 694, 1039, 1087, 2320
Ksp22I TGATCA 3 cut(s) 907, 1312, 2371
LmnI GCTCC 9 cut(s) 228, 236, 583, 632, 676, 1015, 1115, 2234, 2500
Lsp1109I GCAGC 4 cut(s) 748, 1557, 1560, 1979
LweI GCATC 8 cut(s) 855, 1336, 1675, 1758, 1970, 2003, 2377, 2500
MaeI CTAG 4 cut(s) 170, 485, 852, 1290
MaeII ACGT 5 cut(s) 180, 694, 1039, 1087, 2320
MbiI CCGCTC 1 cut(s) 679
MfeI CAATTG 1 cut(s) 2098
MflI RGATCY 2 cut(s) 1709, 2523
MhlI GDGCHC 4 cut(s) 233, 1012, 2054, 2572
MlsI TGGCCA 1 cut(s) 1382
MluNI TGGCCA 1 cut(s) 1382
MlyI GAGTC 4 cut(s) 17, 760, 1141, 2339
MmeI TCCRAC 3 cut(s) 378, 1037, 1696
Mox20I TGGCCA 1 cut(s) 1382
Mph1103I ATGCAT 2 cut(s) 870, 1683
MroXI GAANNNNTTC 1 cut(s) 1089
MscI TGGCCA 1 cut(s) 1382
MseI TTAA 7 cut(s) 102, 243, 926, 1818, 2183, 2243, 2412
MslI CAYNNNNRTG 4 cut(s) 54, 1676, 1909, 2508
Msp20I TGGCCA 1 cut(s) 1382
MspCI CTTAAG 1 cut(s) 101
MspI CCGG 4 cut(s) 62, 1223, 1398, 2084
MspR9I CCNGG 7 cut(s) 63, 653, 976, 1059, 1630, 2084, 2384
MunI CAATTG 1 cut(s) 2098
MvaI CCWGG 5 cut(s) 653, 976, 1059, 1630, 2384
MvnI CGCG 1 cut(s) 1304
MwoI GCNNNNNNNGC 2 cut(s) 106, 1989
NciI CCSGG 2 cut(s) 63, 2084
NcoI CCATGG 1 cut(s) 2564
NlaIV GGNNCC 6 cut(s) 634, 1339, 1913, 1957, 2236, 2381
NmuCI GTSAC 5 cut(s) 494, 1075, 1779, 1841, 2078
NsiI ATGCAT 2 cut(s) 870, 1683
NspI RCATGY 1 cut(s) 1926
PagI TCATGA 1 cut(s) 1309
PciI ACATGT 1 cut(s) 1922
PcsI WCGNNNNNNNCGW 1 cut(s) 1789
PdmI GAANNNNTTC 1 cut(s) 1089
PfeI GAWTC 9 cut(s) 698, 707, 716, 770, 940, 1448, 1719, 2200, 2597
PflFI GACNNNGTC 1 cut(s) 1777
PfoI TCCNGGA 3 cut(s) 651, 1057, 2382
PkrI GCNGC 5 cut(s) 763, 1547, 1550, 1994, 2065
Ple19I CGATCG 1 cut(s) 2338
PleI GAGTC 4 cut(s) 17, 759, 1141, 2339
PpsI GAGTC 4 cut(s) 17, 759, 1141, 2339
Ppu21I YACGTR 1 cut(s) 1040
PpuMI RGGWCCY 2 cut(s) 1338, 2380
PscI ACATGT 1 cut(s) 1922
Psp124BI GAGCTC 1 cut(s) 233
Psp5II RGGWCCY 2 cut(s) 1338, 2380
Psp6I CCWGG 5 cut(s) 651, 974, 1057, 1628, 2382
PspEI GGTNACC 1 cut(s) 1841
PspGI CCWGG 5 cut(s) 651, 974, 1057, 1628, 2382
PspN4I GGNNCC 6 cut(s) 634, 1339, 1913, 1957, 2236, 2381
PspPI GGNCC 5 cut(s) 424, 978, 1201, 1338, 2380
PspPPI RGGWCCY 2 cut(s) 1338, 2380
PstNI CAGNNNCTG 2 cut(s) 521, 1349
PsuI RGATCY 2 cut(s) 1709, 2523
PsyI GACNNNGTC 1 cut(s) 1777
PvuI CGATCG 1 cut(s) 2338
RsaI GTAC 7 cut(s) 60, 662, 1187, 1288, 1294, 1494, 2584
RsaNI GTAC 7 cut(s) 59, 661, 1186, 1287, 1293, 1493, 2583
RseI CAYNNNNRTG 4 cut(s) 54, 1676, 1909, 2508
SacI GAGCTC 1 cut(s) 233
SaqAI TTAA 7 cut(s) 102, 243, 926, 1818, 2183, 2243, 2412
SatI GCNGC 5 cut(s) 762, 1546, 1549, 1993, 2064
Sau96I GGNCC 5 cut(s) 424, 978, 1201, 1338, 2380
SchI GAGTC 4 cut(s) 17, 760, 1141, 2339
ScrFI CCNGG 7 cut(s) 63, 653, 976, 1059, 1630, 2084, 2384
SduI GDGCHC 4 cut(s) 233, 1012, 2054, 2572
SfaNI GCATC 8 cut(s) 855, 1336, 1675, 1758, 1970, 2003, 2377, 2500
SfcI CTRYAG 4 cut(s) 72, 432, 490, 1515
SinI GGWCC 4 cut(s) 424, 978, 1338, 2380
SmiMI CAYNNNNRTG 4 cut(s) 54, 1676, 1909, 2508
SmlI CTYRAG 2 cut(s) 101, 2571
SmoI CTYRAG 2 cut(s) 101, 2571
SpeI ACTAGT 1 cut(s) 1289
SsiI CCGC 6 cut(s) 679, 1304, 1771, 1888, 2064, 2468
SspI AATATT 2 cut(s) 1823, 1973
SspMI CTAG 4 cut(s) 170, 485, 852, 1290
SstI GAGCTC 1 cut(s) 233
StyD4I CCNGG 7 cut(s) 61, 651, 974, 1057, 1628, 2082, 2382
StyI CCWWGG 2 cut(s) 2496, 2564
TaaI ACNGT 6 cut(s) 73, 494, 1616, 2021, 2123, 2444
TaiI ACGT 5 cut(s) 183, 697, 1042, 1090, 2323
TaqI TCGA 4 cut(s) 150, 810, 2395, 2429
TaqII GACCGA 1 cut(s) 573
TatI WGTACW 2 cut(s) 1185, 1292
TauI GCSGC 1 cut(s) 2066
TfiI GAWTC 9 cut(s) 698, 707, 716, 770, 940, 1448, 1719, 2200, 2597
Tru1I TTAA 7 cut(s) 102, 243, 926, 1818, 2183, 2243, 2412
Tru9I TTAA 7 cut(s) 102, 243, 926, 1818, 2183, 2243, 2412
TseFI GTSAC 5 cut(s) 494, 1075, 1779, 1841, 2078
TseI GCWGC 4 cut(s) 761, 1545, 1548, 1992
Tsp45I GTSAC 5 cut(s) 494, 1075, 1779, 1841, 2078
TspGWI ACGGA 3 cut(s) 1012, 1763, 1825
Tth111I GACNNNGTC 1 cut(s) 1777
Vha464I CTTAAG 1 cut(s) 101
VpaK11BI GGWCC 4 cut(s) 424, 978, 1338, 2380
XapI RAATTY 8 cut(s) 111, 189, 252, 272, 450, 561, 991, 2414
XceI RCATGY 1 cut(s) 1926
XcmI CCANNNNNNNNNTGG 2 cut(s) 434, 1922
XmiI GTMKAC 2 cut(s) 489, 1919
XmnI GAANNNNTTC 1 cut(s) 1089
XspI CTAG 4 cut(s) 170, 485, 852, 1290
Zsp2I ATGCAT 2 cut(s) 870, 1683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.