Rw7G041970

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005087
Physical Location & Seq
Forward (+)
65615874 .. 65619681
3808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041970.1

Sequence Viewer

Length: 1728 bp
ATGAGCGCAACAGCGCGAGGCGTGATGATGTCCAAAGCTGCCGACTCTGCTACTAAACTCAAAAGATCACATGGAGATGAATCAGGAGATACTGTAGGCTTGGCACAGAAGATGTATCAGCTTAAGAAGCAAATTCAAGCAGAGAGAGTGATGTCAGTGAAGGAGAAAATTGAGCAGAATAGGAAGAAGCTAGAAAGTTACGTTTCGGAAATATCGTCAGTAATTTCAAGAGAAAATGAGCCAAGTGGGAGCTCTAGATTGCTTAATTTAAGAATTCAACATCCTCCCTGCAGATTCAGTGGTTTTTCTAAGGGATTTGGTGATAAAGATTATAGTAATAATGAAGATGAGTTACTCTCGTCAAGTATTGAGCTTCCAAAAGCTCACAAGATTGATCCTTATACAACTTGGATATGGTTGGACAGGAATCAGAGAATGGCTGAGGACCAATCAGTAGTTGGGAGGAGGCAAATTTACTACGATAAAGAACATGGCGTTGAAGCTCTGGTCTACAGTGACACTGATGATGAGATGACAGAACCTGAAGAAGTGAAACGTGCATTTTCTGGAGGAGAAGATCGAATTCTGTCGATGGCCTTTCAGGAGCATGGGACAGGAGAAGAAGTAATGAAATCTGTGAGCCAGTTTATTGGAGCCACCACTTCAGAAATCCAGGAGCGGTACATTACAATTAAGGAGCGGGACTGTGAAAAACATGAATCAAAAGATTCTGGGGAATCTGGATCAGATAAGCACATTTCTCTTGATAAGAGTCTCAGTGCTGCATTAGATTCTTTTGATAACCTTTTCTGTCGCCGTTGCCTGATATTTGATTGTCGTCTGCATGGCTGTTCTCAACCTCTAATCTATCCTAGTGAAAAGCAGTTGCATTGGTCAGAACATGAGGAGGACGACAAACCTTGCAGTGATCAATGTTACCTTAGGTTAAAGGCAGTTGACAACCTGTTGGAAGGTCCACATATTGATGCTCTGGGTAGAACAAATATAACAAAGTCAGAGAGAGAAAGTGCTCCAGCATCATCCTTTACTGCTGAACAACTAAGTTCTCGTTGTAGTATGGACATCATACATGATGAAAGATACATTCCTGGAAAATCTGTGGTTGTCACTTCAGAAACTATTCATAGTTCAGATGTCAATACTGGAGCTTTAGGTTTGGATACAGAAATGATGATGACTCACAATGAAAATTCAGGGAAACGGAAGGTCATAATGTACACAGATAAAGAGGCACATGACCAAACTATAGTGCCGGATGATTTGCAGGGGTCTTGCAAGAAACAGAAGGGATTAGATGCCTTGCACTTAGTAACTAGTACACCAATCCTGGTTCAAGATCACTTTACCAGTTCTCAACTTAAGAACTCAGATGGTGATTTACCCAATAAAAATGAACTTGAAATGCCCAACAACGAATGCACCAGACATACTTCAAAGGAACTTGTTTGTTTTGGCAGTTCTTCCCATGATGAATCTATGGACGATGTCAAAGATAAGCCAAAAGATGTAATAGAAGTACTGAAGCAACCATCCAAATCTACAGGACGGCAAGTTGAAGGGCAGTGTAGTAGCAGCTCTGAATGGAAGGCAGTAGAGAAAGAATTATACATGAAGGGATTAGAGATATTTGGGAGAAACAGCTGCCTTATAGCCAGGAACTTACTTTCTGCCAACTTGGCCTGTGGAACTATTACTGACTTGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005911 GO:0006139 GO:0006325 GO:0006342 GO:0006349 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0030054 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048316 GO:0048317 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070734 GO:0071514 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090568 GO:0090698 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:2000014 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko00310 ko05206 map00310 map05206
Pfam Domains
Protein Families
SET

Protein Analysis

575

Amino Acids

64.44

Weight (kDa)

5.36

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HTH_CLF_N PF25996 188 - 232 2.1e-20 Histone-lysine N-methyltransferase CLF, N-terminal HTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 679, 700
AccI GTMKAC 1 cut(s) 510
AccII CGCG 1 cut(s) 16
AciI CCGC 2 cut(s) 679, 700
AclWI GGATC 2 cut(s) 389, 751
AcsI RAATTY 5 cut(s) 132, 273, 471, 582, 1210
AcuI CTGAAG 4 cut(s) 564, 648, 1116, 1562
AfaI GTAC 4 cut(s) 683, 1238, 1339, 1539
AflII CTTAAG 2 cut(s) 122, 1379
AgsI TTSAA 8 cut(s) 137, 228, 278, 500, 1355, 1421, 1455, 1577
AhlI ACTAGT 1 cut(s) 1334
AjnI CCWGG 4 cut(s) 672, 1108, 1347, 1673
Alw21I GWGCWC 2 cut(s) 254, 1033
Alw26I GTCTC 1 cut(s) 779
AlwI GGATC 2 cut(s) 389, 751
AlwNI CAGNNNCTG 1 cut(s) 542
AoxI GGCC 2 cut(s) 594, 1698
ApeKI GCWGC 4 cut(s) 38, 782, 1593, 1662
ApoI RAATTY 5 cut(s) 132, 273, 471, 582, 1210
Asp700I GAANNNNTTC 1 cut(s) 1140
AspLEI GCGC 2 cut(s) 8, 16
AspS9I GGNCC 2 cut(s) 445, 974
AsuHPI GGTGA 2 cut(s) 332, 1406
AvaII GGWCC 2 cut(s) 445, 974
AxyI CCTNAGG 1 cut(s) 941
BanII GRGCYC 1 cut(s) 254
BarI GAAGNNNNNNTAC 2 cut(s) 336, 368
Bbv12I GWGCWC 2 cut(s) 254, 1033
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 4 cut(s) 25, 769, 1605, 1649
BccI CCATC 3 cut(s) 586, 1385, 1558
BceAI ACGGC 2 cut(s) 801, 1583
BciT130I CCWGG 4 cut(s) 674, 1110, 1349, 1675
BciVI GTATCC 1 cut(s) 1174
BclI TGATCA 1 cut(s) 928
BcoDI GTCTC 1 cut(s) 779
BcuI ACTAGT 1 cut(s) 1334
BfaI CTAG 5 cut(s) 191, 255, 873, 1335, 1726
BfmI CTRYAG 5 cut(s) 93, 289, 511, 1266, 1560
BfrI CTTAAG 2 cut(s) 122, 1379
BfuI GTATCC 1 cut(s) 1174
BglI GCCNNNNNGGC 1 cut(s) 1697
BisI GCNGC 4 cut(s) 39, 783, 1594, 1663
BlsI GCNGC 4 cut(s) 40, 784, 1595, 1664
BmcAI AGTACT 1 cut(s) 1539
Bme1390I CCNGG 4 cut(s) 674, 1110, 1349, 1675
Bme18I GGWCC 2 cut(s) 445, 974
BmgT120I GGNCC 2 cut(s) 445, 974
BmiI GGNNCC 1 cut(s) 655
BmrFI CCNGG 4 cut(s) 674, 1110, 1349, 1675
BmsI GCATC 3 cut(s) 976, 1046, 1306
BplI GAGNNNNNCTC 2 cut(s) 341, 373
BpmI CTGGAG 3 cut(s) 588, 1017, 1185
Bpu10I CCTNAGC 1 cut(s) 441
BsaXI ACNNNNNCTCC 4 cut(s) 78, 108, 609, 639
Bse1I ACTGG 3 cut(s) 643, 1168, 1368
Bse21I CCTNAGG 1 cut(s) 941
BseBI CCWGG 4 cut(s) 674, 1110, 1349, 1675
BseGI GGATG 4 cut(s) 280, 1040, 1282, 1550
BseMII CTCAG 3 cut(s) 432, 790, 1401
BseNI ACTGG 3 cut(s) 643, 1168, 1368
BseRI GAGGAG 3 cut(s) 478, 585, 920
BseXI GCAGC 4 cut(s) 25, 769, 1605, 1649
Bsh1236I CGCG 1 cut(s) 16
BshFI GGCC 2 cut(s) 596, 1700
BsiHKAI GWGCWC 2 cut(s) 254, 1033
BsiSI CCGG 1 cut(s) 1274
BslFI GGGAC 2 cut(s) 625, 716
BsmAI GTCTC 1 cut(s) 779
BsmFI GGGAC 2 cut(s) 625, 716
BsmI GAATGC 1 cut(s) 1442
BsnI GGCC 2 cut(s) 596, 1700
Bsp1286I GDGCHC 2 cut(s) 254, 1033
Bsp1407I TGTACA 1 cut(s) 1236
Bsp143I GATC 6 cut(s) 65, 394, 577, 743, 928, 1357
BspACI CCGC 2 cut(s) 679, 700
BspANI GGCC 2 cut(s) 596, 1700
BspCNI CTCAG 3 cut(s) 433, 789, 1400
BspFNI CGCG 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 655
BspMAI CTGCAG 1 cut(s) 293
BspPI GGATC 2 cut(s) 389, 751
BspTI CTTAAG 2 cut(s) 122, 1379
BsrBI CCGCTC 2 cut(s) 679, 700
BsrGI TGTACA 1 cut(s) 1236
BsrI ACTGG 3 cut(s) 643, 1168, 1368
BssMI GATC 6 cut(s) 65, 394, 577, 743, 928, 1357
Bst2UI CCWGG 4 cut(s) 674, 1110, 1349, 1675
Bst4CI ACNGT 3 cut(s) 94, 515, 707
BstAFI CTTAAG 2 cut(s) 122, 1379
BstAUI TGTACA 1 cut(s) 1236
BstDEI CTNAG 7 cut(s) 309, 441, 776, 941, 1061, 1327, 1387
BstF5I GGATG 4 cut(s) 280, 1040, 1282, 1550
BstFNI CGCG 1 cut(s) 16
BstHHI GCGC 2 cut(s) 8, 16
BstKTI GATC 6 cut(s) 68, 397, 580, 746, 931, 1360
BstMAI GTCTC 1 cut(s) 779
BstMBI GATC 6 cut(s) 65, 394, 577, 743, 928, 1357
BstMWI GCNNNNNNNGC 3 cut(s) 47, 127, 1697
BstNI CCWGG 4 cut(s) 674, 1110, 1349, 1675
BstSCI CCNGG 4 cut(s) 672, 1108, 1347, 1673
BstSFI CTRYAG 5 cut(s) 93, 289, 511, 1266, 1560
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 4 cut(s) 25, 769, 1605, 1649
BstXI CCANNNNNNTGG 1 cut(s) 650
Bsu36I CCTNAGG 1 cut(s) 941
BsuI GTATCC 1 cut(s) 1174
BsuRI GGCC 2 cut(s) 596, 1700
BtsCI GGATG 4 cut(s) 280, 1040, 1282, 1550
BtsI GCAGTG 2 cut(s) 931, 1589
BtsIMutI CAGTG 7 cut(s) 162, 304, 519, 520, 784, 931, 1589
CaiI CAGNNNCTG 1 cut(s) 542
CfoI GCGC 2 cut(s) 8, 16
Cfr13I GGNCC 2 cut(s) 445, 974
Csp6I GTAC 4 cut(s) 682, 1237, 1338, 1538
CviQI GTAC 4 cut(s) 682, 1237, 1338, 1538
DdeI CTNAG 7 cut(s) 309, 441, 776, 941, 1061, 1327, 1387
DpnI GATC 6 cut(s) 67, 396, 579, 745, 930, 1359
DpnII GATC 6 cut(s) 65, 394, 577, 743, 928, 1357
Ecl136II GAGCTC 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 254
Eco47I GGWCC 2 cut(s) 445, 974
Eco53kI GAGCTC 1 cut(s) 252
Eco57I CTGAAG 4 cut(s) 564, 648, 1116, 1562
Eco81I CCTNAGG 1 cut(s) 941
EcoICRI GAGCTC 1 cut(s) 252
EcoRI GAATTC 2 cut(s) 273, 582
EcoRII CCWGG 4 cut(s) 672, 1108, 1347, 1673
EcoT38I GRGCYC 1 cut(s) 254
FaqI GGGAC 2 cut(s) 625, 716
FauI CCCGC 1 cut(s) 693
FbaI TGATCA 1 cut(s) 928
FblI GTMKAC 1 cut(s) 510
Fnu4HI GCNGC 4 cut(s) 39, 783, 1594, 1663
FokI GGATG 4 cut(s) 267, 1027, 1289, 1537
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 4 cut(s) 39, 783, 1594, 1663
FspBI CTAG 5 cut(s) 191, 255, 873, 1335, 1726
GlaI GCGC 2 cut(s) 7, 15
GluI GCNGC 4 cut(s) 39, 783, 1594, 1663
GsuI CTGGAG 3 cut(s) 588, 1017, 1185
HaeIII GGCC 2 cut(s) 596, 1700
HapII CCGG 1 cut(s) 1274
HhaI GCGC 2 cut(s) 8, 16
Hin6I GCGC 2 cut(s) 6, 14
HinP1I GCGC 2 cut(s) 6, 14
HincII GTYRAC 1 cut(s) 958
HindII GTYRAC 1 cut(s) 958
HpaII CCGG 1 cut(s) 1274
HphI GGTGA 2 cut(s) 332, 1406
Hpy166II GTNNAC 5 cut(s) 511, 958, 977, 1239, 1340
Hpy188III TCNNGA 8 cut(s) 84, 228, 255, 567, 602, 741, 764, 1355
Hpy8I GTNNAC 5 cut(s) 511, 958, 977, 1239, 1340
HpyAV CCTTC 7 cut(s) 154, 965, 1219, 1300, 1571, 1600, 1627
HpyCH4III ACNGT 3 cut(s) 94, 515, 707
HpyCH4IV ACGT 2 cut(s) 201, 556
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 127, 1697
HpyF3I CTNAG 7 cut(s) 309, 441, 776, 941, 1061, 1327, 1387
HpySE526I ACGT 2 cut(s) 201, 556
HspAI GCGC 2 cut(s) 6, 14
Ksp22I TGATCA 1 cut(s) 928
Kzo9I GATC 6 cut(s) 65, 394, 577, 743, 928, 1357
LmnI GCTCC 7 cut(s) 249, 604, 653, 676, 697, 1036, 1166
Lsp1109I GCAGC 4 cut(s) 25, 769, 1605, 1649
LweI GCATC 3 cut(s) 976, 1046, 1306
MaeI CTAG 5 cut(s) 191, 255, 873, 1335, 1726
MaeII ACGT 2 cut(s) 201, 556
MaeIII GTNAC 6 cut(s) 197, 351, 515, 935, 1126, 1330
MalI GATC 6 cut(s) 67, 396, 579, 745, 930, 1359
MbiI CCGCTC 2 cut(s) 679, 700
MboI GATC 6 cut(s) 65, 394, 577, 743, 928, 1357
MboII GAAGA 7 cut(s) 121, 196, 356, 557, 587, 632, 1473
MhlI GDGCHC 2 cut(s) 254, 1033
MlyI GAGTC 3 cut(s) 38, 781, 1192
MmeI TCCRAC 2 cut(s) 399, 948
MroXI GAANNNNTTC 1 cut(s) 1140
MseI TTAA 6 cut(s) 123, 264, 269, 693, 947, 1380
MslI CAYNNNNRTG 2 cut(s) 75, 984
MspA1I CMGCKG 1 cut(s) 1662
MspCI CTTAAG 2 cut(s) 122, 1379
MspI CCGG 1 cut(s) 1274
MspR9I CCNGG 4 cut(s) 674, 1110, 1349, 1675
Mva1269I GAATGC 1 cut(s) 1442
MvaI CCWGG 4 cut(s) 674, 1110, 1349, 1675
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 3 cut(s) 47, 127, 1697
NdeII GATC 6 cut(s) 65, 394, 577, 743, 928, 1357
NlaIV GGNNCC 1 cut(s) 655
NmuCI GTSAC 2 cut(s) 515, 1126
PcsI WCGNNNNNNNCGW 1 cut(s) 212
PctI GAATGC 1 cut(s) 1442
PdmI GAANNNNTTC 1 cut(s) 1140
PfeI GAWTC 8 cut(s) 80, 294, 427, 719, 728, 737, 791, 1493
PflFI GACNNNGTC 1 cut(s) 1505
PfoI TCCNGGA 2 cut(s) 672, 1108
PkrI GCNGC 4 cut(s) 40, 784, 1595, 1664
PleI GAGTC 3 cut(s) 38, 780, 1192
PpsI GAGTC 3 cut(s) 38, 780, 1192
Psp124BI GAGCTC 1 cut(s) 254
Psp6I CCWGG 4 cut(s) 672, 1108, 1347, 1673
PspGI CCWGG 4 cut(s) 672, 1108, 1347, 1673
PspN4I GGNNCC 1 cut(s) 655
PspPI GGNCC 2 cut(s) 445, 974
PstI CTGCAG 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 542
PsyI GACNNNGTC 1 cut(s) 1505
PvuII CAGCTG 1 cut(s) 1662
RsaI GTAC 4 cut(s) 683, 1238, 1339, 1539
RsaNI GTAC 4 cut(s) 682, 1237, 1338, 1538
RseI CAYNNNNRTG 2 cut(s) 75, 984
SacI GAGCTC 1 cut(s) 254
SaqAI TTAA 6 cut(s) 123, 264, 269, 693, 947, 1380
SatI GCNGC 4 cut(s) 39, 783, 1594, 1663
Sau3AI GATC 6 cut(s) 65, 394, 577, 743, 928, 1357
Sau96I GGNCC 2 cut(s) 445, 974
ScaI AGTACT 1 cut(s) 1539
SchI GAGTC 3 cut(s) 38, 781, 1192
ScrFI CCNGG 4 cut(s) 674, 1110, 1349, 1675
SduI GDGCHC 2 cut(s) 254, 1033
SfaNI GCATC 3 cut(s) 976, 1046, 1306
SfcI CTRYAG 5 cut(s) 93, 289, 511, 1266, 1560
SinI GGWCC 2 cut(s) 445, 974
SmiMI CAYNNNNRTG 2 cut(s) 75, 984
SmlI CTYRAG 3 cut(s) 122, 1379, 1720
SmoI CTYRAG 3 cut(s) 122, 1379, 1720
SpeI ACTAGT 1 cut(s) 1334
SsiI CCGC 2 cut(s) 679, 700
SspMI CTAG 5 cut(s) 191, 255, 873, 1335, 1726
SstI GAGCTC 1 cut(s) 254
StyD4I CCNGG 4 cut(s) 672, 1108, 1347, 1673
TaaI ACNGT 3 cut(s) 94, 515, 707
TaiI ACGT 2 cut(s) 204, 559
TaqI TCGA 2 cut(s) 580, 590
TatI WGTACW 3 cut(s) 1236, 1337, 1537
TfiI GAWTC 8 cut(s) 80, 294, 427, 719, 728, 737, 791, 1493
Tru1I TTAA 6 cut(s) 123, 264, 269, 693, 947, 1380
Tru9I TTAA 6 cut(s) 123, 264, 269, 693, 947, 1380
TscAI CASTG 7 cut(s) 162, 304, 520, 526, 784, 931, 1589
TseFI GTSAC 2 cut(s) 515, 1126
TseI GCWGC 4 cut(s) 38, 782, 1593, 1662
Tsp45I GTSAC 2 cut(s) 515, 1126
TspGWI ACGGA 1 cut(s) 1237
TspRI CASTG 7 cut(s) 162, 304, 520, 526, 784, 931, 1589
Tth111I GACNNNGTC 1 cut(s) 1505
Vha464I CTTAAG 2 cut(s) 122, 1379
VpaK11BI GGWCC 2 cut(s) 445, 974
XapI RAATTY 5 cut(s) 132, 273, 471, 582, 1210
XbaI TCTAGA 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XmiI GTMKAC 1 cut(s) 510
XmnI GAANNNNTTC 1 cut(s) 1140
XspI CTAG 5 cut(s) 191, 255, 873, 1335, 1726
ZrmI AGTACT 1 cut(s) 1539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.