Rorug07G0342300

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005087
Physical Location & Seq
Reverse (-)
37659348 .. 37702248
42901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0342300.1

Sequence Viewer

Length: 249 bp
ATGCATCCTCCATTAACGTTACACAAGCACCCTATGTGTGCACAAATCATTGAGGAGTTTCAGAAATGTCATTTAGATCATCCTTTTGCAAAATTCATTGGTGAATGTACAGATCTCAAAATAAAGCTTGATCGCTGTTTTCGGCAGGAAAAAGCGTTGAAGAGGAAAGCCAACTTTGAACAGAGTAAAAAATTGAGGGACAGGCTACAAGCTTCAAGGAAGGAAACTGCTGAGGCGATCACTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005911 GO:0006139 GO:0006325 GO:0006342 GO:0006349 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0030054 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048316 GO:0048317 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070734 GO:0071514 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090568 GO:0090698 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:2000014 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko00310 ko05206 map00310 map05206
Pfam Domains
Protein Families
SET

Protein Analysis

82

Amino Acids

9.7

Weight (kDa)

9.21

Isoelectric Point (pI)

61.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cmc1 PF08583 1 - 69 7.7e-14 Cytochrome c oxidase biogenesis protein Cmc1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 17
AcsI RAATTY 1 cut(s) 92
AfaI GTAC 1 cut(s) 109
AgsI TTSAA 3 cut(s) 160, 179, 216
AluBI AGCT 2 cut(s) 127, 212
AluI AGCT 2 cut(s) 127, 212
Alw21I GWGCWC 1 cut(s) 43
Alw44I GTGCAC 1 cut(s) 39
ApaLI GTGCAC 1 cut(s) 39
ApoI RAATTY 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 43
BbvCI CCTCAGC 1 cut(s) 231
BglII AGATCT 1 cut(s) 112
BmsI GCATC 1 cut(s) 13
Bpu10I CCTNAGC 1 cut(s) 231
BseGI GGATG 2 cut(s) 4, 79
BseMII CTCAG 1 cut(s) 222
BseRI GAGGAG 1 cut(s) 68
BseSI GKGCMC 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 43
BslFI GGGAC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 107
Bsp143I GATC 4 cut(s) 76, 112, 130, 237
BspCNI CTCAG 1 cut(s) 223
BsrGI TGTACA 1 cut(s) 107
BssMI GATC 4 cut(s) 76, 112, 130, 237
Bst6I CTCTTC 1 cut(s) 155
BstAUI TGTACA 1 cut(s) 107
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 2 cut(s) 4, 79
BstKTI GATC 4 cut(s) 79, 115, 133, 240
BstMBI GATC 4 cut(s) 76, 112, 130, 237
BstSLI GKGCMC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BtsCI GGATG 2 cut(s) 4, 79
BtsIMutI CAGTG 1 cut(s) 240
Csp6I GTAC 1 cut(s) 108
CviJI RGCY 4 cut(s) 127, 170, 205, 212
CviKI_1 RGCY 4 cut(s) 127, 170, 205, 212
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 1 cut(s) 231
DpnI GATC 4 cut(s) 78, 114, 132, 239
DpnII GATC 4 cut(s) 76, 112, 130, 237
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 1 cut(s) 35
FaqI GGGAC 1 cut(s) 212
FokI GGATG 1 cut(s) 66
HindIII AAGCTT 2 cut(s) 125, 210
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 63
Hpy8I GTNNAC 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 3 cut(s) 4, 41, 89
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 1 cut(s) 17
Kzo9I GATC 4 cut(s) 76, 112, 130, 237
LpnPI CCDG 2 cut(s) 131, 187
LweI GCATC 1 cut(s) 13
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 18
MalI GATC 4 cut(s) 78, 114, 132, 239
MboI GATC 4 cut(s) 76, 112, 130, 237
MboII GAAGA 1 cut(s) 172
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 2 cut(s) 92, 191
MnlI CCTC 5 cut(s) 18, 46, 156, 189, 226
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 14
NdeII GATC 4 cut(s) 76, 112, 130, 237
NsiI ATGCAT 1 cut(s) 6
Psp1406I AACGTT 1 cut(s) 17
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 14
Sau3AI GATC 4 cut(s) 76, 112, 130, 237
SduI GDGCHC 1 cut(s) 43
SetI ASST 3 cut(s) 20, 129, 214
SfaNI GCATC 1 cut(s) 13
SgeI CNNG 6 cut(s) 37, 140, 158, 214, 221, 228
Sse9I AATT 2 cut(s) 92, 191
TaiI ACGT 1 cut(s) 20
TasI AATT 2 cut(s) 92, 191
TatI WGTACW 1 cut(s) 107
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 85
TspRI CASTG 1 cut(s) 247
VneI GTGCAC 1 cut(s) 39
XapI RAATTY 1 cut(s) 92
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.