FvH4_6g00550

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018050
Physical Location & Seq
Reverse (-)
326072 .. 328282
2211 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00550.t1

Sequence Viewer

Length: 2211 bp
ATGAGACGGGCTTATCTGAGAACCAGTTGCATCAGCTCTAACTCATTGTTAAAGCATACCCATAACTTGGAGTTTCAGAGATTCCAGCACTCTGGTTACCAATCATTACCTGATGTTCATCATGCCAAATCTGTCAAGGATGGTTCGTTGCACCATTTGAATGTGGGGAGCTACGTTGTTAGTCTGTACATGAAATCTAAAAACTTGGACTATGCATGCAAGCTGTTCGATGAAATGCCTGAGAGGGATGTCCAGTCGTGGACTATATTAATCTCCGGGTTTGCTCGGACTAGAGCTTGTAGATTTGTGCTCGAGCTTTTCAAAGAGATGCAAGTTGAGCGTGTTTGTCCGAACCAATTTACGTTGTCGAGTGTTTTGAAGAGTTGTTCGAGTTTATGTGATTTTCGGATGGGGAAGGGAGTTCATGGATGGATATTGAGAAATGGGATTGAGGTGGATGTGGTGTTAGAGAATTCATTGCTTGATGTTTACGTCAAATGTGGAGCGTTGGATTATGCGGAAAGGTTGTTTGAGACTATCAAAGAGAGGGATACAGTTACTTGGAATATAATGATGGGTGCATATATGCATATTGGGGACATGGAGAAGGCTCTTGAAATGTTCAGAAGGGTACCCTGCAAGGATGTTGCTAGTTGGAATACAATTGTGTATGGGTTGATGCAGAATGGGGATGAAAGATGTGCATTGGAGCTGCTTTATGAGATGGTGGAAAACGGAGTTTCGTTTCAGGATGTCACTTTCTCTGTAGCTCTCGGTTTGGCTTCATCTTTACATGTTGTGGAAATTGGGAGACAAATTCATGGCTGTCTTGTGAGGCTTGGCATTGAAAATGATGGATTTCTTCGATCTTCATTGATTGATATGTATTGCAAATGTGGGAGAATGGACAAGGCATCACTGATATTCAAAAGAACGCCTCTCAGAGCAAAGTATAAGTTTACGAGTGATGAGGTGAAGACTGAAATCATATCATGGAGTTCAATGGTTTCTGGGTATGTTCGTAATGGTGAGCATGAATATGCTTTGATAACTTTCCGTTCTATGCTCCGTGAACAGTTTATGGTGGATCGATTCTCTGTAACCAGCGTTGTTTCTGCATGTGCTAACCTTGGGAGTTTGCTTCTGGGTCAAAGTATCCATGCACTTGGTCAGAAAGTTGGGTACATATTAGATGTTCACTTGAGTTCCTGCTATATTGATATGTATGCTAAATGTGGGAGTCTAACTGATGCCTGGATGATTTTTACACCAACTCATGATCCAAATGTTGTTTTGTGGACGTCAATGATTTCTGCTTGCGCTTTACATGGGCAAGGGAAAGAGGCTGCACAACTCTTCGAACTCATGATAAGAGAGGGAATGAAACCGAATGAGGTTACTTTCGTGGGGCTTTTAAATGCGTGCAGCCATGCTGGGCTCATTGAAGAAGGCAGCAAATATTTCAGCTTGATGAAAGAAGTATACGGCATTAAGCCGGGAACTGAACACTTCACATGTATGGTTGATCTTTATGGTCGTGCAGGTCGCTTGAATGAGACTAAGCAGTTCATTCATGAAAATGGCATTTCTCACTTGAGTTCAGTTTGGAAGTCATTTCTATCTGCTTCCCGGCTTCATAAAAATGTAGAGCTGGGAAAGTGGGTTTCTGAAAAGCTCCTCCAACTCGAACCTTCTGATGAGGGGCCTTATGTTTTGATGTCAAACATGTGTGCTGCAGATCACAGATGGGAAGAAGCAGCTGAAATGAGGAGGTTGATGCAACAGAGAGGAATTAACAAAGTTGCCGGCCAATCTTGGATCCAACTGAAGAATCAAGTACACTCCTTTGTCATGGGAGACCGGAGTCATCCACATTCCACTGAGATATATTCGTACTTGGACGAACTGATTGCAAGACTGAAGGAAATCGGGTATTCACTGGACACAAAGCTAGTGATGCAGGACGTAGAACAAGAACAAGGAGAAGCACTTCTTGCGCATCACAGTGAAAAGCTTGCAATTGCCTATGGCATCATTAGCACGGCTTCTGGGATACCTATTCGGATAATGAAGAACCTTAGAGTGTGTAGTGATTGTCACAACTTCATTAAATTTACTTCTCAGCTTTTAAATAGGGAAATAATTGTCAGAGACCTTCATCGCTTCCATCATTTTAAGCATGGGAGCTGCTCCTGTGGAGATTATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 UPF0016

Protein Analysis

737

Amino Acids

83.71

Weight (kDa)

7.02

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 83 - 130 9.6e-07 PPR repeat family
PPR PF01535 186 - 211 6.4e-06 PPR repeat
PPR_2 PF13041 428 - 476 6.1e-12 PPR repeat family
PPR_3 PF13812 428 - 475 2.1e-06 Pentatricopeptide repeat domain
PPR PF01535 431 - 460 8.8e-07 PPR repeat
E_motif PF20431 546 - 608 6.2e-14 E motif
Eplus_motif PF20430 613 - 640 7.1e-09 E+ motif
DYW_deaminase PF14432 644 - 736 1.7e-39 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018050)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00550
malus_domestica MD12G1260100.v1.1
prunus_persica Prupe.6G360800_v2.0.a1
pyrus_communis pycom12g23820
rosa_chinensis RchiOBHm_Chr3g0447941
rosa_laevigata RLG00000025959
rosa_roxburghii Rroxscaffold_6G00426130
rosa_rugosa Rorug02G0607200
rosa_samantha Rh3BG006100 Rh3DG006700
rosa_wichuraiana Rw3G000510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1304
Acc16I TGCGCA 1 cut(s) 1998
Acc36I ACCTGC 1 cut(s) 1532
Acc65I GGTACC 1 cut(s) 631
AccB1I GGYRCC 1 cut(s) 631
AccB7I CCANNNNNTGG 1 cut(s) 67
AccI GTMKAC 1 cut(s) 1482
AciI CCGC 1 cut(s) 518
AclWI GGATC 4 cut(s) 1095, 1274, 1813, 1826
AcoI YGGCCR 1 cut(s) 1807
AcsI RAATTY 3 cut(s) 472, 816, 2111
AcuI CTGAAG 2 cut(s) 1847, 1940
AcyI GRCGYC 1 cut(s) 1301
AfaI GTAC 5 cut(s) 188, 633, 1184, 1839, 1895
AfiI CCNNNNNNNGG 1 cut(s) 67
AflIII ACRYGT 3 cut(s) 793, 1514, 1725
AgsI TTSAA 9 cut(s) 160, 322, 379, 617, 848, 928, 1002, 1445, 1552
AjnI CCWGG 1 cut(s) 1253
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 5 cut(s) 527, 805, 1550, 1851, 2145
AlwI GGATC 4 cut(s) 1095, 1274, 1813, 1826
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 2 cut(s) 1703, 1807
ApeKI GCWGC 7 cut(s) 712, 1346, 1425, 1452, 1733, 1757, 2187
ApoI RAATTY 3 cut(s) 472, 816, 2111
AseI ATTAAT 1 cut(s) 269
Asp700I GAANNNNTTC 1 cut(s) 1989
Asp718I GGTACC 1 cut(s) 631
AspLEI GCGC 2 cut(s) 1322, 1999
AspS9I GGNCC 1 cut(s) 1703
AsuC2I CCSGG 3 cut(s) 277, 1497, 1630
AsuHPI GGTGA 2 cut(s) 985, 1040
AsuII TTCGAA 1 cut(s) 1359
AvaI CYCGRG 1 cut(s) 311
BamHI GGATCC 1 cut(s) 1818
BanI GGYRCC 1 cut(s) 631
BanII GRGCYC 1 cut(s) 1440
BbsI GAAGAC 1 cut(s) 983
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 7 cut(s) 699, 1333, 1437, 1464, 1720, 1769, 2174
BccI CCATC 8 cut(s) 134, 403, 423, 568, 718, 848, 1740, 2175
BceAI ACGGC 2 cut(s) 1501, 2058
BcgI CGANNNNNNTGC 4 cut(s) 208, 242, 1892, 1926
BciT130I CCWGG 1 cut(s) 1255
BciVI GTATCC 3 cut(s) 544, 1166, 2046
BcnI CCSGG 3 cut(s) 277, 1497, 1630
BcoDI GTCTC 5 cut(s) 527, 805, 1550, 1851, 2145
BfaI CTAG 3 cut(s) 291, 651, 1952
BfmI CTRYAG 2 cut(s) 765, 1734
BfuAI ACCTGC 1 cut(s) 1532
BfuI GTATCC 3 cut(s) 544, 1166, 2046
BisI GCNGC 7 cut(s) 713, 1347, 1426, 1453, 1734, 1758, 2188
BlsI GCNGC 7 cut(s) 714, 1348, 1427, 1454, 1735, 1759, 2189
Bme1390I CCNGG 4 cut(s) 277, 1255, 1497, 1630
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 1703
BmiI GGNNCC 3 cut(s) 633, 1704, 1820
BmrFI CCNGG 4 cut(s) 277, 1255, 1497, 1630
BmsI GCATC 9 cut(s) 39, 318, 669, 923, 1240, 1767, 1947, 2008, 2040
BoxI GACNNNNGTC 1 cut(s) 1863
BpiI GAAGAC 1 cut(s) 983
Bpu14I TTCGAA 1 cut(s) 1359
BpuEI CTTGAG 2 cut(s) 1222, 1615
BpuMI CCSGG 3 cut(s) 277, 1497, 1630
Bsa29I ATCGAT 1 cut(s) 1090
BsaBI GATNNNNATC 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 1301
BsaI GGTCTC 2 cut(s) 1851, 2145
BsaJI CCNNGG 1 cut(s) 1129
BsaWI WCCGGW 1 cut(s) 1860
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse118I RCCGGY 1 cut(s) 1805
Bse1I ACTGG 3 cut(s) 24, 253, 1944
Bse3DI GCAATG 1 cut(s) 476
Bse8I GATNNNNATC 1 cut(s) 117
BseBI CCWGG 1 cut(s) 1255
BseCI ATCGAT 1 cut(s) 1090
BseDI CCNNGG 1 cut(s) 1129
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMI GCAATG 1 cut(s) 476
BseMII CTCAG 5 cut(s) 8, 231, 955, 1872, 2135
BseNI ACTGG 3 cut(s) 24, 253, 1944
BseRI GAGGAG 2 cut(s) 1667, 1783
BseXI GCAGC 7 cut(s) 699, 1333, 1437, 1464, 1720, 1769, 2174
BseYI CCCAGC 2 cut(s) 1433, 1651
BsgI GTGCAG 3 cut(s) 1332, 1444, 1560
BshFI GGCC 2 cut(s) 1705, 1809
BshNI GGYRCC 1 cut(s) 631
BshVI ATCGAT 1 cut(s) 1090
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 5 cut(s) 276, 1496, 1630, 1806, 1861
BslFI GGGAC 1 cut(s) 611
BslI CCNNNNNNNGG 1 cut(s) 67
BsmAI GTCTC 5 cut(s) 527, 805, 1550, 1851, 2145
BsmFI GGGAC 1 cut(s) 611
BsnI GGCC 2 cut(s) 1705, 1809
Bso31I GGTCTC 2 cut(s) 1851, 2145
BsoBI CYCGRG 1 cut(s) 311
Bsp119I TTCGAA 1 cut(s) 1359
Bsp1286I GDGCHC 2 cut(s) 312, 1440
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 6 cut(s) 866, 1087, 1279, 1525, 1738, 1818
BspACI CCGC 1 cut(s) 518
BspANI GGCC 2 cut(s) 1705, 1809
BspCNI CTCAG 5 cut(s) 9, 232, 954, 1873, 2134
BspDI ATCGAT 1 cut(s) 1090
BspHI TCATGA 3 cut(s) 1276, 1365, 1573
BspLI GGNNCC 3 cut(s) 633, 1704, 1820
BspMAI CTGCAG 1 cut(s) 1738
BspMI ACCTGC 1 cut(s) 1532
BspPI GGATC 4 cut(s) 1095, 1274, 1813, 1826
BspT104I TTCGAA 1 cut(s) 1359
BspT107I GGYRCC 1 cut(s) 631
BspTNI GGTCTC 2 cut(s) 1851, 2145
BsrDI GCAATG 1 cut(s) 476
BsrFI RCCGGY 1 cut(s) 1805
BsrGI TGTACA 1 cut(s) 186
BsrI ACTGG 3 cut(s) 24, 253, 1944
BssAI RCCGGY 1 cut(s) 1805
BssECI CCNNGG 1 cut(s) 1129
BssMI GATC 6 cut(s) 866, 1087, 1279, 1525, 1738, 1818
BssNAI GTATAC 1 cut(s) 1483
BssNI GRCGYC 1 cut(s) 1301
BssT1I CCWWGG 1 cut(s) 1129
Bst1107I GTATAC 1 cut(s) 1483
Bst2UI CCWGG 1 cut(s) 1255
Bst4CI ACNGT 3 cut(s) 556, 1077, 2006
Bst6I CTCTTC 2 cut(s) 374, 1361
BstACI GRCGYC 1 cut(s) 1301
BstAPI GCANNNNNTGC 1 cut(s) 1994
BstAUI TGTACA 1 cut(s) 186
BstBI TTCGAA 1 cut(s) 1359
BstC8I GCNNGC 6 cut(s) 217, 221, 1318, 1423, 1807, 2016
BstDEI CTNAG 7 cut(s) 17, 240, 941, 1560, 1881, 2078, 2121
BstEII GGTNACC 1 cut(s) 95
BstHHI GCGC 2 cut(s) 1322, 1999
BstKTI GATC 6 cut(s) 869, 1090, 1282, 1528, 1741, 1821
BstMAI GTCTC 5 cut(s) 527, 805, 1550, 1851, 2145
BstMBI GATC 6 cut(s) 866, 1087, 1279, 1525, 1738, 1818
BstMWI GCNNNNNNNGC 4 cut(s) 337, 1957, 1994, 2037
BstNI CCWGG 1 cut(s) 1255
BstNSI RCATGY 5 cut(s) 219, 797, 1122, 1518, 1729
BstPAI GACNNNNGTC 1 cut(s) 1863
BstPI GGTNACC 1 cut(s) 95
BstSCI CCNGG 4 cut(s) 275, 1253, 1495, 1628
BstSFI CTRYAG 2 cut(s) 765, 1734
BstV1I GCAGC 7 cut(s) 699, 1333, 1437, 1464, 1720, 1769, 2174
BstV2I GAAGAC 1 cut(s) 983
BstX2I RGATCY 1 cut(s) 1818
BstXI CCANNNNNNTGG 2 cut(s) 92, 1166
BstYI RGATCY 1 cut(s) 1818
BstZ17I GTATAC 1 cut(s) 1483
Bsu15I ATCGAT 1 cut(s) 1090
BsuI GTATCC 3 cut(s) 544, 1166, 2046
BsuRI GGCC 2 cut(s) 1705, 1809
BsuTUI ATCGAT 1 cut(s) 1090
BtgZI GCGATG 1 cut(s) 2144
BtsIMutI CAGTG 4 cut(s) 917, 1878, 1937, 2011
BveI ACCTGC 1 cut(s) 1532
Cac8I GCNNGC 6 cut(s) 217, 221, 1318, 1423, 1807, 2016
CciI TCATGA 3 cut(s) 1276, 1365, 1573
CfoI GCGC 2 cut(s) 1322, 1999
Cfr10I RCCGGY 1 cut(s) 1805
Cfr13I GGNCC 1 cut(s) 1703
ClaI ATCGAT 1 cut(s) 1090
Csp6I GTAC 5 cut(s) 187, 632, 1183, 1838, 1894
CviQI GTAC 5 cut(s) 187, 632, 1183, 1838, 1894
DdeI CTNAG 7 cut(s) 17, 240, 941, 1560, 1881, 2078, 2121
DpnI GATC 6 cut(s) 868, 1089, 1281, 1527, 1740, 1820
DpnII GATC 6 cut(s) 866, 1087, 1279, 1525, 1738, 1818
DraI TTTAAA 2 cut(s) 1416, 2130
EaeI YGGCCR 1 cut(s) 1807
Eam1104I CTCTTC 2 cut(s) 374, 1361
EarI CTCTTC 2 cut(s) 374, 1361
Eco130I CCWWGG 1 cut(s) 1129
Eco24I GRGCYC 1 cut(s) 1440
Eco31I GGTCTC 2 cut(s) 1851, 2145
Eco57I CTGAAG 2 cut(s) 1847, 1940
Eco88I CYCGRG 1 cut(s) 311
Eco91I GGTNACC 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 1703
EcoO65I GGTNACC 1 cut(s) 95
EcoRI GAATTC 1 cut(s) 472
EcoRII CCWGG 1 cut(s) 1253
EcoT14I CCWWGG 1 cut(s) 1129
EcoT22I ATGCAT 2 cut(s) 217, 591
EcoT38I GRGCYC 1 cut(s) 1440
ErhI CCWWGG 1 cut(s) 1129
FalI AAGNNNNNCTT 2 cut(s) 1977, 2009
FaqI GGGAC 1 cut(s) 611
FblI GTMKAC 1 cut(s) 1482
Fnu4HI GCNGC 7 cut(s) 713, 1347, 1426, 1453, 1734, 1758, 2188
FriOI GRGCYC 1 cut(s) 1440
Fsp4HI GCNGC 7 cut(s) 713, 1347, 1426, 1453, 1734, 1758, 2188
FspBI CTAG 3 cut(s) 291, 651, 1952
FspI TGCGCA 1 cut(s) 1998
GlaI GCGC 2 cut(s) 1321, 1998
GluI GCNGC 7 cut(s) 713, 1347, 1426, 1453, 1734, 1758, 2188
GsaI CCCAGC 2 cut(s) 1437, 1655
HaeIII GGCC 2 cut(s) 1705, 1809
HapII CCGG 5 cut(s) 276, 1496, 1630, 1806, 1861
HhaI GCGC 2 cut(s) 1322, 1999
Hin1I GRCGYC 1 cut(s) 1301
Hin6I GCGC 2 cut(s) 1320, 1997
HinP1I GCGC 2 cut(s) 1320, 1997
HindIII AAGCTT 1 cut(s) 2012
HinfI GANTC 5 cut(s) 81, 1092, 1240, 1831, 1864
HpaII CCGG 5 cut(s) 276, 1496, 1630, 1806, 1861
HphI GGTGA 2 cut(s) 985, 1040
Hpy166II GTNNAC 8 cut(s) 261, 490, 960, 1073, 1198, 1299, 1483, 1840
Hpy188III TCNNGA 5 cut(s) 614, 749, 1277, 1366, 1574
Hpy8I GTNNAC 8 cut(s) 261, 490, 960, 1073, 1198, 1299, 1483, 1840
HpyAV CCTTC 7 cut(s) 409, 601, 621, 1442, 1701, 1915, 2165
HpyCH4III ACNGT 3 cut(s) 556, 1077, 2006
HpyCH4IV ACGT 5 cut(s) 174, 362, 492, 1301, 1965
HpyF10VI GCNNNNNNNGC 4 cut(s) 337, 1957, 1994, 2037
HpyF3I CTNAG 7 cut(s) 17, 240, 941, 1560, 1881, 2078, 2121
HpySE526I ACGT 5 cut(s) 174, 362, 492, 1301, 1965
Hsp92I GRCGYC 1 cut(s) 1301
HspAI GCGC 2 cut(s) 1320, 1997
KpnI GGTACC 1 cut(s) 635
KroI GCCGGC 1 cut(s) 1805
KroNI GCCGGC 1 cut(s) 1807
Kzo9I GATC 6 cut(s) 866, 1087, 1279, 1525, 1738, 1818
LmnI GCTCC 7 cut(s) 168, 503, 709, 1071, 1680, 2184, 2195
Lsp1109I GCAGC 7 cut(s) 699, 1333, 1437, 1464, 1720, 1769, 2174
LweI GCATC 9 cut(s) 39, 318, 669, 923, 1240, 1767, 1947, 2008, 2040
MaeI CTAG 3 cut(s) 291, 651, 1952
MaeII ACGT 5 cut(s) 174, 362, 492, 1301, 1965
MaeIII GTNAC 6 cut(s) 95, 556, 754, 1099, 1396, 2096
MalI GATC 6 cut(s) 868, 1089, 1281, 1527, 1740, 1820
MboI GATC 6 cut(s) 866, 1087, 1279, 1525, 1738, 1818
MboII GAAGA 9 cut(s) 391, 854, 861, 988, 1348, 1457, 1763, 1840, 2083
MfeI CAATTG 2 cut(s) 663, 2019
MflI RGATCY 1 cut(s) 1818
MhlI GDGCHC 2 cut(s) 312, 1440
MluCI AATT 9 cut(s) 356, 472, 663, 804, 816, 1791, 2019, 2111, 2142
MlyI GAGTC 2 cut(s) 1249, 1873
MmeI TCCRAC 4 cut(s) 489, 635, 1705, 1846
Mph1103I ATGCAT 2 cut(s) 217, 591
MroNI GCCGGC 1 cut(s) 1805
MroXI GAANNNNTTC 1 cut(s) 1989
MseI TTAA 8 cut(s) 50, 269, 1415, 1491, 1794, 2109, 2129, 2175
MslI CAYNNNNRTG 6 cut(s) 159, 1038, 1517, 1578, 1641, 2004
MspA1I CMGCKG 1 cut(s) 1760
MspI CCGG 5 cut(s) 276, 1496, 1630, 1806, 1861
MspR9I CCNGG 4 cut(s) 277, 1255, 1497, 1630
MunI CAATTG 2 cut(s) 663, 2019
MvaI CCWGG 1 cut(s) 1255
MwoI GCNNNNNNNGC 4 cut(s) 337, 1957, 1994, 2037
NaeI GCCGGC 1 cut(s) 1807
NciI CCSGG 3 cut(s) 277, 1497, 1630
NdeII GATC 6 cut(s) 866, 1087, 1279, 1525, 1738, 1818
NgoMIV GCCGGC 1 cut(s) 1805
NlaIV GGNNCC 3 cut(s) 633, 1704, 1820
NmuCI GTSAC 2 cut(s) 754, 2096
NsbI TGCGCA 1 cut(s) 1998
NsiI ATGCAT 2 cut(s) 217, 591
NspI RCATGY 5 cut(s) 219, 797, 1122, 1518, 1729
NspV TTCGAA 1 cut(s) 1359
PaeI GCATGC 1 cut(s) 219
PaeR7I CTCGAG 1 cut(s) 311
PagI TCATGA 3 cut(s) 1276, 1365, 1573
PciI ACATGT 3 cut(s) 793, 1514, 1725
PdiI GCCGGC 1 cut(s) 1807
PdmI GAANNNNTTC 1 cut(s) 1989
PfeI GAWTC 3 cut(s) 81, 1092, 1831
PflMI CCANNNNNTGG 1 cut(s) 67
PkrI GCNGC 7 cut(s) 714, 1348, 1427, 1454, 1735, 1759, 2189
PleI GAGTC 2 cut(s) 1248, 1872
PpsI GAGTC 2 cut(s) 1248, 1872
PscI ACATGT 3 cut(s) 793, 1514, 1725
PshAI GACNNNNGTC 1 cut(s) 1863
PshBI ATTAAT 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 1253
PspEI GGTNACC 1 cut(s) 95
PspFI CCCAGC 2 cut(s) 1433, 1651
PspGI CCWGG 1 cut(s) 1253
PspN4I GGNNCC 3 cut(s) 633, 1704, 1820
PspPI GGNCC 1 cut(s) 1703
PspXI VCTCGAGB 1 cut(s) 311
PstI CTGCAG 1 cut(s) 1738
PsuI RGATCY 1 cut(s) 1818
PvuII CAGCTG 1 cut(s) 1760
RsaI GTAC 5 cut(s) 188, 633, 1184, 1839, 1895
RsaNI GTAC 5 cut(s) 187, 632, 1183, 1838, 1894
RseI CAYNNNNRTG 6 cut(s) 159, 1038, 1517, 1578, 1641, 2004
SaqAI TTAA 8 cut(s) 50, 269, 1415, 1491, 1794, 2109, 2129, 2175
SatI GCNGC 7 cut(s) 713, 1347, 1426, 1453, 1734, 1758, 2188
Sau3AI GATC 6 cut(s) 866, 1087, 1279, 1525, 1738, 1818
Sau96I GGNCC 1 cut(s) 1703
SchI GAGTC 2 cut(s) 1249, 1873
ScrFI CCNGG 4 cut(s) 277, 1255, 1497, 1630
SduI GDGCHC 2 cut(s) 312, 1440
SfaNI GCATC 9 cut(s) 39, 318, 669, 923, 1240, 1767, 1947, 2008, 2040
SfcI CTRYAG 2 cut(s) 765, 1734
Sfr274I CTCGAG 1 cut(s) 311
SfuI TTCGAA 1 cut(s) 1359
SlaI CTCGAG 1 cut(s) 311
SmiMI CAYNNNNRTG 6 cut(s) 159, 1038, 1517, 1578, 1641, 2004
SmlI CTYRAG 3 cut(s) 311, 1201, 1594
SmoI CTYRAG 3 cut(s) 311, 1201, 1594
SphI GCATGC 1 cut(s) 219
Sse9I AATT 9 cut(s) 356, 472, 663, 804, 816, 1791, 2019, 2111, 2142
SsiI CCGC 1 cut(s) 518
SspI AATATT 1 cut(s) 1460
SspMI CTAG 3 cut(s) 291, 651, 1952
StyD4I CCNGG 4 cut(s) 275, 1253, 1495, 1628
StyI CCWWGG 1 cut(s) 1129
TaaI ACNGT 3 cut(s) 556, 1077, 2006
TaiI ACGT 5 cut(s) 177, 365, 495, 1304, 1968
TaqI TCGA 8 cut(s) 228, 312, 368, 389, 865, 1090, 1359, 1686
TasI AATT 9 cut(s) 356, 472, 663, 804, 816, 1791, 2019, 2111, 2142
TatI WGTACW 2 cut(s) 186, 1837
TfiI GAWTC 3 cut(s) 81, 1092, 1831
Tru1I TTAA 8 cut(s) 50, 269, 1415, 1491, 1794, 2109, 2129, 2175
Tru9I TTAA 8 cut(s) 50, 269, 1415, 1491, 1794, 2109, 2129, 2175
TscAI CASTG 4 cut(s) 924, 1885, 1944, 2011
TseFI GTSAC 2 cut(s) 754, 2096
TseI GCWGC 7 cut(s) 712, 1346, 1425, 1452, 1733, 1757, 2187
Tsp45I GTSAC 2 cut(s) 754, 2096
TspGWI ACGGA 3 cut(s) 750, 1046, 1058
TspRI CASTG 4 cut(s) 924, 1885, 1944, 2011
Van91I CCANNNNNTGG 1 cut(s) 67
VspI ATTAAT 1 cut(s) 269
XapI RAATTY 3 cut(s) 472, 816, 2111
XceI RCATGY 5 cut(s) 219, 797, 1122, 1518, 1729
XhoI CTCGAG 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 1482
XmnI GAANNNNTTC 1 cut(s) 1989
XspI CTAG 3 cut(s) 291, 651, 1952
ZraI GACGTC 1 cut(s) 1302
Zsp2I ATGCAT 2 cut(s) 217, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.