Rroxscaffold_6G00426130

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018050
Physical Location & Seq
Reverse (-)
46964661 .. 46966892
2232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00426130.1

Sequence Viewer

Length: 2187 bp
ATGAGACGGGCTTATCTGAGCACCAGTTGCATCAGCTCTAATTTCGAGTTTCAGAGATTCCAGCACTCTGGTTACCATTCACTCCCTGATATTCATCATGCCAAGTCGGTCAAGAATGGTTGTTTGCACCATTTGAATGTGGGGAACTATGTTGTTAGTCTGTACATGAAATCTAAAAACTTGGAGTATGCACACAAGCTGTTCGGTGAAATGCCCGAGAGAGATGTCCGGTCATGGACTATACTCATCTCTGGGTTTGCTCGGACTGGAGCTTGTAGAACGGTGCTGGGGCTTTTCAAGGGGATGCAAGCTGAGCGTGTTTGTCCGAACCAATTCACGCTATCGAGTGTTTTGAAGAGTTGTTCTAGTTTAAGCGATTTTCTGATGGGGAAGGGAGTCCATGGATGGATATTGAGAAATGGGATTGAATTGGATGTGGTGTTAGAGAACTCAATGCTTGATGTTTACGTCAAATGTGGGGAGTTGGATTTTGCAGAAAGGTTGTTTGAGACTATGAAAGAGAGAGATACAGTTACTTGGAATATAATGATGGGTGCATATATGCATGTTGGGGACATGGAGAAGGCTCTTGAGTTGTTCAGAAGGTTACCCTCCAAAGATGTTGCTAGTTGGAATACAATCGTATACGGGTTAATGCAAAATGGGGATGAAAGGTCTGCATTGGAGCTACTTTATGAGATGGTGGAAAATGGAGTTGCATTCGAGGATGTCACTTTCTCTGTAGCTCTGGGTTTGGCTTCATCGTTATATGTTCTCAAACTTGGAAGACAAATTCACGGTTGTCTTGTAAGGCTTGGTATTGAAAATGATGGATTTCTTCGAACTTCGTTGATAGATATGTATTGCAAATGTGGGAGAATGGACAAGGCATCACTGATATTCAAAAGAATGCCTCTTAGGGCAAAGTCTAAGATTACATCTGACGGGATGAAGACTGAAATCGTATCATGGAGTTCAATGGTTTCTGGGTATGTTCGTAACGGTGAGCATGAATATGCTTTGATAACATTCCGTTCCATGCTTCGTGAAAAGATTATGGTGGATAGATTCTCTGTGACCAGTGTTGTTTCTGCATGTGCTAACCTCGGCATTTTGCTTCTGGGTCAAAACATCCATGCAGTCGTTCAGAAAATCGGGTACATATTAGATGTTCATTTAGGTTCCTGCTATATTGATATGTATGCTAAATGTGGGAGTCTAAGTGATGCTTTGATGATTTTTGAACAAACTATTGATCCAAATGTTGTTCTGTGGACTTCAACGATTTCTGCTTGCGCTTTACATGGGCAAGGGAAGGAGGCTATACGACTCTTTGAACTCATGACAAGGGAGGGAATTACACCGAATGAGGTTACTTTCGTGGTGGTTTTAAATGCTTGCAGCCATGCTGGGCTCATTGAAGAAGGCTTCAAATATTTCAGCTTGATGAAAGAAGTTTATGGCATCAAGCCTGGAACTGAACACTTCACCTGTATGGTTGATCTTTATGGTCGTGCAGGTCGCTTGGAGGAGACTAAGGAGTTCATTCATGAAAACGGCATCTCTCACTTGAGTTCAGTTTGGAAGTCATTTCTATCTGCTTGCCGGCTTCATAAAAATTTAGAGCTGGGAAAGTGGATTTCTGAAAAGCTACTCCAACTCGAACCTTCTGATGAGGGGCCTTATGTTTTGATGTCAAACATGTGTGCTGTGAATCACAGATGGGAAGAAGCAGCTGCAATGAGGAGGTTGATGCAACAGAGAGGAATTAACAAATTCCCCGGTCAATCTTGGATCCAACTGAAGAATCAAGTCCACTCCTTCGTGATGGGAGACCGGTGTCATCCACATTCCACTCAGATATATTCGTACTTGGACGAACTTATTGCAAGACTGAAGGCAATCGGGTATTCAATGGATGCAGAGCTGGTGATGCAGGACGTAGAAGAAGAACAAGGAGAAGTACTTCTTGGTCATCACAGTGAAAAGCTTGCTATTGCCTACGGCATAATTAGCACGGCTTCTGGGATACCTATTCGGATAATGAAGAACCTTAGAGTGTGTAGTGATTGTCACAACTTCATTAAATATACTTCTCAGCTTTTAGATAGGGAAATAATTGTCAGAGACCTTCATCGGTTCCATCATTTTAAGCATGGGAGCTGCTCCTGTGGAGATTATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 UPF0016

Protein Analysis

728

Amino Acids

82.52

Weight (kDa)

7.0

Isoelectric Point (pI)

33.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 75 - 122 3.4e-06 PPR repeat family
PPR_2 PF13041 175 - 206 1.1e-06 PPR repeat family
PPR PF01535 178 - 207 6.5e-07 PPR repeat
PPR_2 PF13041 206 - 250 2.3e-06 PPR repeat family
PPR_2 PF13041 321 - 368 6.5e-06 PPR repeat family
PPR_3 PF13812 416 - 467 9.4e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 420 - 468 1.3e-11 PPR repeat family
E_motif PF20431 538 - 600 6.3e-15 E motif
Eplus_motif PF20430 605 - 632 1.1e-07 E+ motif
DYW_deaminase PF14432 636 - 728 3.7e-39 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018050)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00550
malus_domestica MD12G1260100.v1.1
prunus_persica Prupe.6G360800_v2.0.a1
pyrus_communis pycom12g23820
rosa_chinensis RchiOBHm_Chr3g0447941
rosa_laevigata RLG00000025959
rosa_roxburghii Rroxscaffold_6G00426130
rosa_rugosa Rorug02G0607200
rosa_samantha Rh3BG006100 Rh3DG006700
rosa_wichuraiana Rw3G000510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1508
AccI GTMKAC 1 cut(s) 645
AclWI GGATC 3 cut(s) 1250, 1789, 1802
AcsI RAATTY 3 cut(s) 792, 1618, 1775
AcuI CTGAAG 2 cut(s) 1823, 1916
AfaI GTAC 4 cut(s) 164, 1160, 1871, 1965
AflIII ACRYGT 1 cut(s) 1701
AgeI ACCGGT 1 cut(s) 1836
AjnI CCWGG 1 cut(s) 1471
AjuI GAANNNNNNNTTGG 2 cut(s) 1953, 1985
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 4 cut(s) 503, 1526, 1827, 2121
AlwI GGATC 3 cut(s) 1250, 1789, 1802
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 1 cut(s) 1679
ApeKI GCWGC 4 cut(s) 1401, 1733, 1736, 2163
ApoI RAATTY 3 cut(s) 792, 1618, 1775
AsiGI ACCGGT 1 cut(s) 1836
Asp700I GAANNNNTTC 2 cut(s) 332, 1965
AspLEI GCGC 1 cut(s) 1298
AspS9I GGNCC 1 cut(s) 1679
AsuC2I CCSGG 1 cut(s) 1782
AsuHPI GGTGA 4 cut(s) 218, 1016, 1480, 1942
AsuII TTCGAA 1 cut(s) 841
AvaI CYCGRG 1 cut(s) 215
BamHI GGATCC 1 cut(s) 1794
BanII GRGCYC 1 cut(s) 1416
BbsI GAAGAC 2 cut(s) 793, 959
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 4 cut(s) 1413, 1723, 1745, 2150
BccI CCATC 8 cut(s) 379, 399, 544, 694, 824, 1716, 1822, 2151
BceAI ACGGC 3 cut(s) 1573, 2020, 2034
BcgI CGANNNNNNTGC 2 cut(s) 1868, 1902
BciT130I CCWGG 1 cut(s) 1473
BciVI GTATCC 1 cut(s) 2022
BcnI CCSGG 1 cut(s) 1782
BcoDI GTCTC 4 cut(s) 503, 1526, 1827, 2121
BfaI CTAG 2 cut(s) 366, 627
BfmI CTRYAG 1 cut(s) 741
BfuAI ACCTGC 1 cut(s) 1508
BfuI GTATCC 1 cut(s) 2022
BisI GCNGC 4 cut(s) 1402, 1734, 1737, 2164
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 4 cut(s) 1403, 1735, 1738, 2165
BmcAI AGTACT 1 cut(s) 1965
Bme1390I CCNGG 2 cut(s) 1473, 1782
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 1679
BmiI GGNNCC 4 cut(s) 1183, 1680, 1796, 2141
BmrFI CCNGG 2 cut(s) 1473, 1782
BmsI GCATC 9 cut(s) 39, 294, 899, 1216, 1473, 1569, 1743, 1909, 1923
BoxI GACNNNNGTC 1 cut(s) 1839
BpiI GAAGAC 2 cut(s) 793, 959
BpmI CTGGAG 1 cut(s) 288
Bpu1102I GCTNAGC 1 cut(s) 312
Bpu14I TTCGAA 1 cut(s) 841
BpuEI CTTGAG 2 cut(s) 611, 1591
BpuMI CCSGG 1 cut(s) 1782
BsaBI GATNNNNATC 1 cut(s) 93
BsaI GGTCTC 2 cut(s) 1827, 2121
BsaJI CCNNGG 3 cut(s) 400, 1105, 1780
BsaWI WCCGGW 2 cut(s) 228, 1836
BsaXI ACNNNNNCTCC 2 cut(s) 1207, 1237
Bse118I RCCGGY 2 cut(s) 1605, 1836
Bse1I ACTGG 3 cut(s) 24, 271, 1080
Bse3DI GCAATG 1 cut(s) 1746
Bse8I GATNNNNATC 1 cut(s) 93
BseBI CCWGG 1 cut(s) 1473
BseDI CCNNGG 3 cut(s) 400, 1105, 1780
BseGI GGATG 9 cut(s) 309, 410, 439, 673, 733, 954, 1131, 1843, 1924
BseJI GATNNNNATC 1 cut(s) 93
BseMI GCAATG 1 cut(s) 1746
BseMII CTCAG 4 cut(s) 8, 303, 1871, 2111
BseNI ACTGG 3 cut(s) 24, 271, 1080
BseRI GAGGAG 2 cut(s) 1544, 1759
BseXI GCAGC 4 cut(s) 1413, 1723, 1745, 2150
BseYI CCCAGC 3 cut(s) 286, 1409, 1627
BsgI GTGCAG 1 cut(s) 1536
BshFI GGCC 1 cut(s) 1681
BshTI ACCGGT 1 cut(s) 1836
BsiHKAI GWGCWC 1 cut(s) 23
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 4 cut(s) 229, 1606, 1782, 1837
BslFI GGGAC 1 cut(s) 587
BsmAI GTCTC 4 cut(s) 503, 1526, 1827, 2121
BsmFI GGGAC 1 cut(s) 587
BsmI GAATGC 2 cut(s) 719, 915
BsnI GGCC 1 cut(s) 1681
Bso31I GGTCTC 2 cut(s) 1827, 2121
BsoBI CYCGRG 1 cut(s) 215
Bsp119I TTCGAA 1 cut(s) 841
Bsp1286I GDGCHC 2 cut(s) 23, 1416
Bsp1407I TGTACA 1 cut(s) 162
Bsp143I GATC 3 cut(s) 1255, 1501, 1794
Bsp1720I GCTNAGC 1 cut(s) 312
Bsp19I CCATGG 1 cut(s) 400
BspANI GGCC 1 cut(s) 1681
BspCNI CTCAG 4 cut(s) 9, 304, 1870, 2110
BspHI TCATGA 2 cut(s) 1341, 1549
BspLI GGNNCC 4 cut(s) 1183, 1680, 1796, 2141
BspMI ACCTGC 1 cut(s) 1508
BspPI GGATC 3 cut(s) 1250, 1789, 1802
BspT104I TTCGAA 1 cut(s) 841
BspTNI GGTCTC 2 cut(s) 1827, 2121
BsrDI GCAATG 1 cut(s) 1746
BsrFI RCCGGY 2 cut(s) 1605, 1836
BsrGI TGTACA 1 cut(s) 162
BsrI ACTGG 3 cut(s) 24, 271, 1080
BssAI RCCGGY 2 cut(s) 1605, 1836
BssECI CCNNGG 3 cut(s) 400, 1105, 1780
BssMI GATC 3 cut(s) 1255, 1501, 1794
BssNAI GTATAC 1 cut(s) 646
BssT1I CCWWGG 1 cut(s) 400
Bst1107I GTATAC 1 cut(s) 646
Bst2UI CCWGG 1 cut(s) 1473
Bst4CI ACNGT 5 cut(s) 283, 532, 800, 1004, 1982
Bst6I CTCTTC 1 cut(s) 350
BstAPI GCANNNNNTGC 1 cut(s) 27
BstAUI TGTACA 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 841
BstC8I GCNNGC 6 cut(s) 309, 1294, 1399, 1603, 1607, 1992
BstDEI CTNAG 9 cut(s) 17, 312, 917, 930, 1220, 1536, 1857, 2054, 2097
BstDSI CCRYGG 1 cut(s) 400
BstEII GGTNACC 2 cut(s) 71, 606
BstF5I GGATG 9 cut(s) 309, 410, 439, 673, 733, 954, 1131, 1843, 1924
BstHHI GCGC 1 cut(s) 1298
BstKTI GATC 3 cut(s) 1258, 1504, 1797
BstMAI GTCTC 4 cut(s) 503, 1526, 1827, 2121
BstMBI GATC 3 cut(s) 1255, 1501, 1794
BstMWI GCNNNNNNNGC 4 cut(s) 27, 313, 1933, 2013
BstNI CCWGG 1 cut(s) 1473
BstNSI RCATGY 3 cut(s) 569, 1098, 1705
BstPAI GACNNNNGTC 1 cut(s) 1839
BstPI GGTNACC 2 cut(s) 71, 606
BstSCI CCNGG 2 cut(s) 1471, 1780
BstSFI CTRYAG 1 cut(s) 741
BstV1I GCAGC 4 cut(s) 1413, 1723, 1745, 2150
BstV2I GAAGAC 2 cut(s) 793, 959
BstX2I RGATCY 1 cut(s) 1794
BstXI CCANNNNNNTGG 1 cut(s) 68
BstYI RGATCY 1 cut(s) 1794
BstZ17I GTATAC 1 cut(s) 646
BsuI GTATCC 1 cut(s) 2022
BsuRI GGCC 1 cut(s) 1681
BtgI CCRYGG 1 cut(s) 400
BtsCI GGATG 9 cut(s) 309, 410, 439, 673, 733, 954, 1131, 1843, 1924
BtsIMutI CAGTG 3 cut(s) 893, 1087, 1987
BveI ACCTGC 1 cut(s) 1508
Cac8I GCNNGC 6 cut(s) 309, 1294, 1399, 1603, 1607, 1992
CciI TCATGA 2 cut(s) 1341, 1549
CfoI GCGC 1 cut(s) 1298
Cfr10I RCCGGY 2 cut(s) 1605, 1836
Cfr13I GGNCC 1 cut(s) 1679
Csp6I GTAC 4 cut(s) 163, 1159, 1870, 1964
CspAI ACCGGT 1 cut(s) 1836
CviQI GTAC 4 cut(s) 163, 1159, 1870, 1964
DdeI CTNAG 9 cut(s) 17, 312, 917, 930, 1220, 1536, 1857, 2054, 2097
DpnI GATC 3 cut(s) 1257, 1503, 1796
DpnII GATC 3 cut(s) 1255, 1501, 1794
DraI TTTAAA 1 cut(s) 1392
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 1416
Eco31I GGTCTC 2 cut(s) 1827, 2121
Eco57I CTGAAG 2 cut(s) 1823, 1916
Eco88I CYCGRG 1 cut(s) 215
Eco91I GGTNACC 2 cut(s) 71, 606
EcoO109I RGGNCCY 1 cut(s) 1679
EcoO65I GGTNACC 2 cut(s) 71, 606
EcoRII CCWGG 1 cut(s) 1471
EcoT14I CCWWGG 1 cut(s) 400
EcoT22I ATGCAT 1 cut(s) 567
EcoT38I GRGCYC 1 cut(s) 1416
ErhI CCWWGG 1 cut(s) 400
FalI AAGNNNNNCTT 4 cut(s) 1213, 1245, 1953, 1985
FaqI GGGAC 1 cut(s) 587
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 4 cut(s) 1402, 1734, 1737, 2164
FokI GGATG 9 cut(s) 316, 417, 446, 680, 740, 961, 1118, 1830, 1931
FriOI GRGCYC 1 cut(s) 1416
Fsp4HI GCNGC 4 cut(s) 1402, 1734, 1737, 2164
FspBI CTAG 2 cut(s) 366, 627
GlaI GCGC 1 cut(s) 1297
GluI GCNGC 4 cut(s) 1402, 1734, 1737, 2164
GsaI CCCAGC 3 cut(s) 290, 1413, 1631
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 1 cut(s) 1681
HapII CCGG 4 cut(s) 229, 1606, 1782, 1837
HhaI GCGC 1 cut(s) 1298
Hin6I GCGC 1 cut(s) 1296
HinP1I GCGC 1 cut(s) 1296
HindIII AAGCTT 1 cut(s) 1988
HinfI GANTC 7 cut(s) 57, 396, 1068, 1216, 1329, 1714, 1807
HpaII CCGG 4 cut(s) 229, 1606, 1782, 1837
HphI GGTGA 4 cut(s) 218, 1016, 1480, 1942
Hpy166II GTNNAC 4 cut(s) 466, 646, 1275, 1816
Hpy188III TCNNGA 6 cut(s) 112, 590, 1046, 1342, 1550, 1825
Hpy8I GTNNAC 4 cut(s) 466, 646, 1275, 1816
HpyAV CCTTC 9 cut(s) 385, 577, 597, 1309, 1418, 1677, 1831, 1891, 2141
HpyCH4III ACNGT 5 cut(s) 283, 532, 800, 1004, 1982
HpyCH4IV ACGT 2 cut(s) 468, 1941
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 313, 1933, 2013
HpyF3I CTNAG 9 cut(s) 17, 312, 917, 930, 1220, 1536, 1857, 2054, 2097
HpySE526I ACGT 2 cut(s) 468, 1941
HspAI GCGC 1 cut(s) 1296
KroI GCCGGC 1 cut(s) 1605
KroNI GCCGGC 1 cut(s) 1607
Kzo9I GATC 3 cut(s) 1255, 1501, 1794
LmnI GCTCC 4 cut(s) 269, 685, 2160, 2171
Lsp1109I GCAGC 4 cut(s) 1413, 1723, 1745, 2150
LweI GCATC 9 cut(s) 39, 294, 899, 1216, 1473, 1569, 1743, 1909, 1923
MaeI CTAG 2 cut(s) 366, 627
MaeII ACGT 2 cut(s) 468, 1941
MaeIII GTNAC 8 cut(s) 71, 532, 606, 730, 998, 1075, 1372, 2072
MalI GATC 3 cut(s) 1257, 1503, 1796
MboI GATC 3 cut(s) 1255, 1501, 1794
MflI RGATCY 1 cut(s) 1794
MhlI GDGCHC 2 cut(s) 23, 1416
MlyI GAGTC 3 cut(s) 405, 1225, 1323
MmeI TCCRAC 4 cut(s) 465, 611, 1681, 1822
Mph1103I ATGCAT 1 cut(s) 567
MroNI GCCGGC 1 cut(s) 1605
MroXI GAANNNNTTC 2 cut(s) 332, 1965
MseI TTAA 6 cut(s) 371, 653, 1391, 1770, 2085, 2151
MslI CAYNNNNRTG 4 cut(s) 135, 1014, 1493, 1980
MspA1I CMGCKG 1 cut(s) 1736
MspI CCGG 4 cut(s) 229, 1606, 1782, 1837
MspR9I CCNGG 2 cut(s) 1473, 1782
Mva1269I GAATGC 2 cut(s) 719, 915
MvaI CCWGG 1 cut(s) 1473
MwoI GCNNNNNNNGC 4 cut(s) 27, 313, 1933, 2013
NaeI GCCGGC 1 cut(s) 1607
NciI CCSGG 1 cut(s) 1782
NcoI CCATGG 1 cut(s) 400
NdeII GATC 3 cut(s) 1255, 1501, 1794
NgoMIV GCCGGC 1 cut(s) 1605
NlaIV GGNNCC 4 cut(s) 1183, 1680, 1796, 2141
NmeAIII GCCGAG 1 cut(s) 1086
NmuCI GTSAC 3 cut(s) 730, 1075, 2072
NsiI ATGCAT 1 cut(s) 567
NspI RCATGY 3 cut(s) 569, 1098, 1705
NspV TTCGAA 1 cut(s) 841
PagI TCATGA 2 cut(s) 1341, 1549
PciI ACATGT 1 cut(s) 1701
PctI GAATGC 2 cut(s) 719, 915
PdiI GCCGGC 1 cut(s) 1607
PdmI GAANNNNTTC 2 cut(s) 332, 1965
PfeI GAWTC 4 cut(s) 57, 1068, 1714, 1807
PinAI ACCGGT 1 cut(s) 1836
PkrI GCNGC 4 cut(s) 1403, 1735, 1738, 2165
PleI GAGTC 3 cut(s) 404, 1224, 1323
PpsI GAGTC 3 cut(s) 404, 1224, 1323
PscI ACATGT 1 cut(s) 1701
PshAI GACNNNNGTC 1 cut(s) 1839
Psp6I CCWGG 1 cut(s) 1471
PspEI GGTNACC 2 cut(s) 71, 606
PspFI CCCAGC 3 cut(s) 286, 1409, 1627
PspGI CCWGG 1 cut(s) 1471
PspN4I GGNNCC 4 cut(s) 1183, 1680, 1796, 2141
PspPI GGNCC 1 cut(s) 1679
PsuI RGATCY 1 cut(s) 1794
PvuII CAGCTG 1 cut(s) 1736
RsaI GTAC 4 cut(s) 164, 1160, 1871, 1965
RsaNI GTAC 4 cut(s) 163, 1159, 1870, 1964
RseI CAYNNNNRTG 4 cut(s) 135, 1014, 1493, 1980
SaqAI TTAA 6 cut(s) 371, 653, 1391, 1770, 2085, 2151
SatI GCNGC 4 cut(s) 1402, 1734, 1737, 2164
Sau3AI GATC 3 cut(s) 1255, 1501, 1794
Sau96I GGNCC 1 cut(s) 1679
ScaI AGTACT 1 cut(s) 1965
SchI GAGTC 3 cut(s) 405, 1225, 1323
ScrFI CCNGG 2 cut(s) 1473, 1782
SduI GDGCHC 2 cut(s) 23, 1416
SfaNI GCATC 9 cut(s) 39, 294, 899, 1216, 1473, 1569, 1743, 1909, 1923
SfcI CTRYAG 1 cut(s) 741
SfuI TTCGAA 1 cut(s) 841
SmiMI CAYNNNNRTG 4 cut(s) 135, 1014, 1493, 1980
SmlI CTYRAG 2 cut(s) 590, 1570
SmoI CTYRAG 2 cut(s) 590, 1570
SspI AATATT 1 cut(s) 1436
SspMI CTAG 2 cut(s) 366, 627
StyD4I CCNGG 2 cut(s) 1471, 1780
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 5 cut(s) 283, 532, 800, 1004, 1982
TaiI ACGT 2 cut(s) 471, 1944
TaqI TCGA 5 cut(s) 45, 344, 723, 841, 1662
TaqII GACCGA 1 cut(s) 97
TatI WGTACW 2 cut(s) 162, 1963
TfiI GAWTC 4 cut(s) 57, 1068, 1714, 1807
Tru1I TTAA 6 cut(s) 371, 653, 1391, 1770, 2085, 2151
Tru9I TTAA 6 cut(s) 371, 653, 1391, 1770, 2085, 2151
TscAI CASTG 3 cut(s) 900, 1087, 1987
TseFI GTSAC 3 cut(s) 730, 1075, 2072
TseI GCWGC 4 cut(s) 1401, 1733, 1736, 2163
Tsp45I GTSAC 3 cut(s) 730, 1075, 2072
TspGWI ACGGA 1 cut(s) 1022
TspRI CASTG 3 cut(s) 900, 1087, 1987
XapI RAATTY 3 cut(s) 792, 1618, 1775
XceI RCATGY 3 cut(s) 569, 1098, 1705
XmiI GTMKAC 1 cut(s) 645
XmnI GAANNNNTTC 2 cut(s) 332, 1965
XspI CTAG 2 cut(s) 366, 627
ZrmI AGTACT 1 cut(s) 1965
Zsp2I ATGCAT 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.