MD12G1260100.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0018050
Physical Location & Seq
Forward (+)
32628092 .. 32630323
2232 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1260100.v1.1.491

Sequence Viewer

Length: 2232 bp
ATGAGATGGATTTGCCTAAACACCAAATACTCAAGCTCTAATCCAATTTCAAAGCATACCCACTTCAAGAGATTCCAACATTGTGGGTACCAATCTCGGGCAGTTGGTGATTTTCCAAATGAGTCCCTGCCTGTTACCCTTCATGCCAAATCTGTCAAGAATGGTACCTTGGACAGTTTGGATGTGAGGAACTATGTCACATTTTTGTATGTGAAATATAGCAACTTGGCCTATGCACACAAGTTGTTTGATGAAAGTCCTGACAGAGATGTCCGGTCGTGGACTATACTTATATCGGGGTTTGCTCGAGTTGGATCGTGCAAAATGGTGTTGGAACTTTTCAAAGAGATGCAGTTTGATCGTGTTTGTCCGAACCAATTTACGTTGTCAAGTGTTCTAAAGAGTTGTTCTAGTTTAAGCGATTTTCGGACTGGGAAGGGAATTCACGGATGGATTTTGAGACATGGGATTGACTTGGATATGGTGTTAGAGAACTCGATACTCGACGTTTATGTAAAATGTGGCGGCTTTGATTATGCAGAGAGGTTATTTGAAGCTATGGAAGAGAGAGACACTGTTGCTTGGAATATAATGATGGGTGCATATATGCATGTTGGGGATATGGAGAAGGCTCTTGATTTGTTCAGAAGATTGCCCTTCAAAGATGTTGCTAGTTGGAATACAATCTTATACGGGCTAATGCAAAACGGGCACGAAAGATATGCATTGGAGCTGCTCTATGAGATGGTGGAAAATGGACCGCCATTTAATCGAGTCACTTTCTCCGAAGCTCTGGTTTTGGCTTCATCTTTATCTGTTTTGGAACTGGGGAGACAAATTCACGGCTGTCTTCTAAGGCTTGGTATTCCAAACGATGGATTTCTGCAAACTTCCTTAATAGATATGTATTGCAAGTGTGGTAAGATGGAGAAGGCGACGCTAGTATTCAAAACAATGCATTTGAGAGCAAATTCTAAGTTTACTTGTCATGAGATGAAGACGGAGATTGTATCATGGAGTTCAATGGTTTCCGGATATGTTCATAATGGTGAGTATGAATATGCTTTGCTAACTTTTTGTTCTATGGTTCGTGAAAGGATTCTGGTGGATAGATTTTCTGTGACGAGTGTTGTTTCTGCATGTGCTAACGTTGGGATTTTGCTTCTTGGTCAGCACATTCATGCTCACATTCAGAAAATCGGGTACAAAATTGATGTCCACTTAGGTTCCTCGTATATTGATATGTATGCTAAATGTGGGAGCCTAAACGATGCTCGGATGATCTTTAAACAAACTGGCGATCTAAATGTTGTGTTGTGGACTTCAATGATTTCCGCTTGTGCTTTACATGGGCAAGGCAAGGAAGCTGTTCAGCTTTTTGAACTCATGATAAAAGAGGGAATTAAGCCGAATGAGGTTTCTTTCGTGGTGGTTTTAAATGCCTGCAGCCACGCCGGGCTCCTTGAAGAAGGCTTCAAGTATTTCAGCTTGATGAAAGAAGTTTATGGCATCAAGCCTGGAGCTGAACATTTCACTTGTATGGCTGATATTTATGGTAGAGCAGGTCGCTTGGATGAGATTAAAGAGTTCATTCAAGCAAATGGCATCTCTCACCTGAGTTCAGTTTGGAAGTCATTTCTATCTTCATGTCGGGTTCATAAAAATTTCGAGCTGGGAAAGTGGGTTTCCGAAAGACTACTCCAACTCGAACCATTGGACGAGGGATCTTATGTTTTATTGTCAAACATGTGTTCCGTGAATCATAGATGGGAAGAAGCAGCTGACATAAGGAGGTTGATGCAAAAGAGAGGAATCAACAAAATCGCTGGTCAGTCTTGGATTCAACTAAAAAATCAAGTCCACTCTTTCGTCATGAGCGATAGGTCCCATCCACACTCCACACAGATATATTCGTATTTGGATGAGCTGATTGGAAGACTGAAGGAAATCGGGTACTCATCAGACATGAAAATGGTGATGCAGGACGTCGAGGAAGAACAACAAGAAGTACTTCTCAGTCATCACAGCGAAAAGCTTGCAGTTGCCTATGGCATCATAAGCACAACTTCTGGGACGCCAATTCGGATCATGAAGAACCTCAGAGTGTGCACTGATTGTCATAACTTTATCAAATATACTTGTCAGCTTTTAGATAGGGAAATAATTGTTAGAGACAGTCATCGCTTCCATCATTTTAAACATGGTCTCTGCTCCTGTGGAGATTACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 UPF0016

Protein Analysis

744

Amino Acids

84.83

Weight (kDa)

7.36

Isoelectric Point (pI)

35.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 90 - 137 3e-08 PPR repeat family
PPR PF01535 93 - 118 9.9e-06 PPR repeat
PPR_2 PF13041 190 - 216 9.5e-06 PPR repeat family
PPR_3 PF13812 435 - 482 9.2e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 436 - 483 8.6e-12 PPR repeat family
PPR PF01535 438 - 468 1.1e-07 PPR repeat
E_motif PF20431 553 - 615 8.5e-15 E motif
Eplus_motif PF20430 620 - 647 1.9e-07 E+ motif
DYW_deaminase PF14432 651 - 743 8.8e-41 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018050)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00550
malus_domestica MD12G1260100.v1.1
prunus_persica Prupe.6G360800_v2.0.a1
pyrus_communis pycom12g23820
rosa_chinensis RchiOBHm_Chr3g0447941
rosa_laevigata RLG00000025959
rosa_roxburghii Rroxscaffold_6G00426130
rosa_rugosa Rorug02G0607200
rosa_samantha Rh3BG006100 Rh3DG006700
rosa_wichuraiana Rw3G000510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 269
AatII GACGTC 1 cut(s) 1989
Acc36I ACCTGC 1 cut(s) 1553
Acc65I GGTACC 2 cut(s) 87, 164
AccB1I GGYRCC 2 cut(s) 87, 164
AccB7I CCANNNNNTGG 1 cut(s) 875
AccIII TCCGGA 1 cut(s) 1031
AciI CCGC 3 cut(s) 525, 761, 1335
AclI AACGTT 1 cut(s) 1149
AclWI GGATC 3 cut(s) 322, 1732, 2093
AcsI RAATTY 4 cut(s) 441, 837, 970, 1663
AcuI CTGAAG 1 cut(s) 1961
AcyI GRCGYC 2 cut(s) 1986, 2075
AfaI GTAC 5 cut(s) 89, 166, 1205, 1955, 2010
AfiI CCNNNNNNNGG 2 cut(s) 97, 875
AflIII ACRYGT 1 cut(s) 1746
AjnI CCWGG 1 cut(s) 1516
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
Alw21I GWGCWC 1 cut(s) 2111
Alw26I GTCTC 5 cut(s) 454, 564, 826, 2166, 2210
Alw44I GTGCAC 1 cut(s) 2107
AlwI GGATC 3 cut(s) 322, 1732, 2093
Ama87I CYCGRG 2 cut(s) 96, 306
Aor13HI TCCGGA 1 cut(s) 1031
AoxI GGCC 1 cut(s) 228
ApaLI GTGCAC 1 cut(s) 2107
ApeKI GCWGC 3 cut(s) 733, 1446, 1778
ApoI RAATTY 4 cut(s) 441, 837, 970, 1663
ArsI GACNNNNNNTTYG 2 cut(s) 1200, 1232
Asp700I GAANNNNTTC 3 cut(s) 1098, 1368, 2010
Asp718I GGTACC 2 cut(s) 87, 164
AspS9I GGNCC 2 cut(s) 758, 1884
AsuC2I CCSGG 1 cut(s) 1456
AsuHPI GGTGA 4 cut(s) 119, 1061, 1604, 1987
AvaI CYCGRG 2 cut(s) 96, 306
AvaII GGWCC 2 cut(s) 758, 1884
BaeGI GKGCMC 2 cut(s) 714, 2111
BanI GGYRCC 2 cut(s) 87, 164
BanII GRGCYC 1 cut(s) 1461
BbsI GAAGAC 3 cut(s) 842, 1004, 1942
Bbv12I GWGCWC 1 cut(s) 2111
BbvI GCAGC 3 cut(s) 720, 1458, 1790
BccI CCATC 8 cut(s) 444, 589, 739, 869, 919, 1761, 1896, 2196
BceAI ACGGC 1 cut(s) 859
BcgI CGANNNNNNTGC 6 cut(s) 341, 375, 704, 738, 2018, 2052
BciT130I CCWGG 1 cut(s) 1518
BcnI CCSGG 1 cut(s) 1456
BcoDI GTCTC 5 cut(s) 454, 564, 826, 2166, 2210
BfaI CTAG 3 cut(s) 411, 672, 941
BfmI CTRYAG 1 cut(s) 1444
BfuAI ACCTGC 1 cut(s) 1553
BisI GCNGC 4 cut(s) 526, 734, 1447, 1779
BlsI GCNGC 4 cut(s) 527, 735, 1448, 1780
BmcAI AGTACT 1 cut(s) 2010
Bme1390I CCNGG 2 cut(s) 1456, 1518
Bme18I GGWCC 2 cut(s) 758, 1884
BmeT110I CYCGRG 2 cut(s) 96, 306
BmgT120I GGNCC 2 cut(s) 758, 1884
BmiI GGNNCC 6 cut(s) 89, 166, 1228, 1262, 1460, 1886
BmrFI CCNGG 2 cut(s) 1456, 1518
BmrI ACTGGG 2 cut(s) 441, 836
BmsI GCATC 7 cut(s) 339, 1261, 1518, 1614, 1788, 1968, 2061
BmuI ACTGGG 2 cut(s) 441, 836
BpiI GAAGAC 3 cut(s) 842, 1004, 1942
BpmI CTGGAG 1 cut(s) 1539
BpuEI CTTGAG 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 1456
BsaHI GRCGYC 2 cut(s) 1986, 2075
BsaI GGTCTC 1 cut(s) 2210
BsaJI CCNNGG 1 cut(s) 168
BsaWI WCCGGW 2 cut(s) 273, 1031
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 875
Bse1I ACTGG 4 cut(s) 436, 831, 1300, 2231
BseAI TCCGGA 1 cut(s) 1031
BseBI CCWGG 1 cut(s) 1518
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 6 cut(s) 187, 455, 1284, 1579, 1888, 1927
BseLI CCNNNNNNNGG 2 cut(s) 97, 875
BseMII CTCAG 3 cut(s) 1607, 2029, 2113
BseNI ACTGG 4 cut(s) 436, 831, 1300, 2231
BseSI GKGCMC 2 cut(s) 714, 2111
BseXI GCAGC 3 cut(s) 720, 1458, 1790
BseYI CCCAGC 1 cut(s) 1672
Bsh1285I CGRYCG 1 cut(s) 278
BshFI GGCC 1 cut(s) 230
BshNI GGYRCC 2 cut(s) 87, 164
BsiEI CGRYCG 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 2111
BsiHKCI CYCGRG 2 cut(s) 96, 306
BsiSI CCGG 3 cut(s) 274, 1032, 1455
BslFI GGGAC 3 cut(s) 109, 1870, 2086
BslI CCNNNNNNNGG 2 cut(s) 97, 875
BsmAI GTCTC 5 cut(s) 454, 564, 826, 2166, 2210
BsmFI GGGAC 3 cut(s) 109, 1870, 2086
BsnI GGCC 1 cut(s) 230
Bso31I GGTCTC 1 cut(s) 2210
BsoBI CYCGRG 2 cut(s) 96, 306
Bsp1286I GDGCHC 3 cut(s) 714, 1461, 2111
Bsp13I TCCGGA 1 cut(s) 1031
Bsp143I GATC 6 cut(s) 314, 358, 1281, 1300, 1724, 2085
BspACI CCGC 3 cut(s) 525, 761, 1335
BspANI GGCC 1 cut(s) 230
BspCNI CTCAG 3 cut(s) 1608, 2028, 2112
BspEI TCCGGA 1 cut(s) 1031
BspHI TCATGA 4 cut(s) 988, 1386, 1872, 2088
BspLI GGNNCC 6 cut(s) 89, 166, 1228, 1262, 1460, 1886
BspMAI CTGCAG 1 cut(s) 1448
BspMI ACCTGC 1 cut(s) 1553
BspPI GGATC 3 cut(s) 322, 1732, 2093
BspT107I GGYRCC 2 cut(s) 87, 164
BspTNI GGTCTC 1 cut(s) 2210
BsrI ACTGG 4 cut(s) 436, 831, 1300, 2231
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 6 cut(s) 314, 358, 1281, 1300, 1724, 2085
BssNI GRCGYC 2 cut(s) 1986, 2075
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 1518
Bst4CI ACNGT 3 cut(s) 176, 577, 2177
Bst6I CTCTTC 1 cut(s) 558
BstACI GRCGYC 2 cut(s) 1986, 2075
BstC8I GCNNGC 2 cut(s) 1444, 2037
BstDEI CTNAG 6 cut(s) 854, 975, 1222, 1616, 2015, 2099
BstF5I GGATG 6 cut(s) 187, 455, 1284, 1579, 1888, 1927
BstKTI GATC 6 cut(s) 317, 361, 1284, 1303, 1727, 2088
BstMAI GTCTC 5 cut(s) 454, 564, 826, 2166, 2210
BstMBI GATC 6 cut(s) 314, 358, 1281, 1300, 1724, 2085
BstMCI CGRYCG 1 cut(s) 278
BstMWI GCNNNNNNNGC 2 cut(s) 709, 2058
BstNI CCWGG 1 cut(s) 1518
BstNSI RCATGY 3 cut(s) 614, 1143, 1750
BstSCI CCNGG 2 cut(s) 1454, 1516
BstSFI CTRYAG 1 cut(s) 1444
BstSLI GKGCMC 2 cut(s) 714, 2111
BstV1I GCAGC 3 cut(s) 720, 1458, 1790
BstV2I GAAGAC 3 cut(s) 842, 1004, 1942
BstX2I RGATCY 1 cut(s) 1724
BstXI CCANNNNNNTGG 1 cut(s) 83
BstYI RGATCY 1 cut(s) 1724
BsuRI GGCC 1 cut(s) 230
BtgZI GCGATG 1 cut(s) 2165
BtsCI GGATG 6 cut(s) 187, 455, 1284, 1579, 1888, 1927
BtsIMutI CAGTG 2 cut(s) 573, 2109
BveI ACCTGC 1 cut(s) 1553
Cac8I GCNNGC 2 cut(s) 1444, 2037
CciI TCATGA 4 cut(s) 988, 1386, 1872, 2088
Cfr13I GGNCC 2 cut(s) 758, 1884
CseI GACGC 2 cut(s) 946, 2083
Csp6I GTAC 5 cut(s) 88, 165, 1204, 1954, 2009
CviQI GTAC 5 cut(s) 88, 165, 1204, 1954, 2009
DdeI CTNAG 6 cut(s) 854, 975, 1222, 1616, 2015, 2099
DpnI GATC 6 cut(s) 316, 360, 1283, 1302, 1726, 2087
DpnII GATC 6 cut(s) 314, 358, 1281, 1300, 1724, 2085
DraI TTTAAA 3 cut(s) 1288, 1437, 2197
DrdI GACNNNNNNGTC 1 cut(s) 269
DseDI GACNNNNNNGTC 1 cut(s) 269
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 1461
Eco31I GGTCTC 1 cut(s) 2210
Eco47I GGWCC 2 cut(s) 758, 1884
Eco57I CTGAAG 1 cut(s) 1961
Eco88I CYCGRG 2 cut(s) 96, 306
EcoO109I RGGNCCY 1 cut(s) 1884
EcoRI GAATTC 1 cut(s) 441
EcoRII CCWGG 1 cut(s) 1516
EcoT14I CCWWGG 1 cut(s) 168
EcoT22I ATGCAT 3 cut(s) 612, 727, 960
EcoT38I GRGCYC 1 cut(s) 1461
ErhI CCWWGG 1 cut(s) 168
FalI AAGNNNNNCTT 4 cut(s) 1995, 2027, 2050, 2082
FaqI GGGAC 3 cut(s) 109, 1870, 2086
Fnu4HI GCNGC 4 cut(s) 526, 734, 1447, 1779
FokI GGATG 6 cut(s) 194, 462, 1291, 1586, 1875, 1934
FriOI GRGCYC 1 cut(s) 1461
Fsp4HI GCNGC 4 cut(s) 526, 734, 1447, 1779
FspBI CTAG 3 cut(s) 411, 672, 941
GluI GCNGC 4 cut(s) 526, 734, 1447, 1779
GsaI CCCAGC 1 cut(s) 1676
GsuI CTGGAG 1 cut(s) 1539
HaeIII GGCC 1 cut(s) 230
HapII CCGG 3 cut(s) 274, 1032, 1455
HgaI GACGC 2 cut(s) 946, 2083
Hin1I GRCGYC 2 cut(s) 1986, 2075
HindIII AAGCTT 1 cut(s) 2033
HinfI GANTC 7 cut(s) 72, 122, 774, 1099, 1759, 1812, 1840
HpaII CCGG 3 cut(s) 274, 1032, 1455
HphI GGTGA 4 cut(s) 119, 1061, 1604, 1987
Hpy166II GTNNAC 6 cut(s) 282, 981, 1219, 1320, 1861, 2109
Hpy8I GTNNAC 6 cut(s) 282, 981, 1219, 1320, 1861, 2109
Hpy99I CGWCG 3 cut(s) 509, 940, 1991
HpyAV CCTTC 7 cut(s) 149, 430, 622, 667, 925, 1463, 1936
HpyCH4III ACNGT 3 cut(s) 176, 577, 2177
HpyCH4IV ACGT 4 cut(s) 383, 507, 1149, 1986
HpyF10VI GCNNNNNNNGC 2 cut(s) 709, 2058
HpyF3I CTNAG 6 cut(s) 854, 975, 1222, 1616, 2015, 2099
HpySE526I ACGT 4 cut(s) 383, 507, 1149, 1986
Hsp92I GRCGYC 2 cut(s) 1986, 2075
Kpn2I TCCGGA 1 cut(s) 1031
KpnI GGTACC 2 cut(s) 91, 168
Kzo9I GATC 6 cut(s) 314, 358, 1281, 1300, 1724, 2085
LmnI GCTCC 5 cut(s) 730, 1260, 1464, 1520, 2216
Lsp1109I GCAGC 3 cut(s) 720, 1458, 1790
LweI GCATC 7 cut(s) 339, 1261, 1518, 1614, 1788, 1968, 2061
MaeI CTAG 3 cut(s) 411, 672, 941
MaeII ACGT 4 cut(s) 383, 507, 1149, 1986
MaeIII GTNAC 4 cut(s) 133, 196, 775, 1120
MalI GATC 6 cut(s) 316, 360, 1283, 1302, 1726, 2087
MboI GATC 6 cut(s) 314, 358, 1281, 1300, 1724, 2085
MflI RGATCY 1 cut(s) 1724
MhlI GDGCHC 3 cut(s) 714, 1461, 2111
MlyI GAGTC 2 cut(s) 131, 783
MmeI TCCRAC 5 cut(s) 100, 292, 312, 656, 1726
Mph1103I ATGCAT 3 cut(s) 612, 727, 960
MroI TCCGGA 1 cut(s) 1031
MroXI GAANNNNTTC 3 cut(s) 1098, 1368, 2010
MseI TTAA 8 cut(s) 416, 768, 896, 1287, 1404, 1436, 1581, 2196
MslI CAYNNNNRTG 4 cut(s) 1047, 1179, 1538, 1970
MspA1I CMGCKG 1 cut(s) 1781
MspI CCGG 3 cut(s) 274, 1032, 1455
MspR9I CCNGG 2 cut(s) 1456, 1518
MvaI CCWGG 1 cut(s) 1518
MwoI GCNNNNNNNGC 2 cut(s) 709, 2058
NciI CCSGG 1 cut(s) 1456
NdeII GATC 6 cut(s) 314, 358, 1281, 1300, 1724, 2085
NlaIV GGNNCC 6 cut(s) 89, 166, 1228, 1262, 1460, 1886
NmuCI GTSAC 3 cut(s) 196, 775, 1120
NsiI ATGCAT 3 cut(s) 612, 727, 960
NspI RCATGY 3 cut(s) 614, 1143, 1750
PaeR7I CTCGAG 1 cut(s) 306
PagI TCATGA 4 cut(s) 988, 1386, 1872, 2088
PciI ACATGT 1 cut(s) 1746
PcsI WCGNNNNNNNCGW 1 cut(s) 1875
PdmI GAANNNNTTC 3 cut(s) 1098, 1368, 2010
PfeI GAWTC 5 cut(s) 72, 1099, 1759, 1812, 1840
PflMI CCANNNNNTGG 1 cut(s) 875
PkrI GCNGC 4 cut(s) 527, 735, 1448, 1780
PleI GAGTC 2 cut(s) 130, 782
PpsI GAGTC 2 cut(s) 130, 782
PpuMI RGGWCCY 1 cut(s) 1884
PscI ACATGT 1 cut(s) 1746
Psp1406I AACGTT 1 cut(s) 1149
Psp5II RGGWCCY 1 cut(s) 1884
Psp6I CCWGG 1 cut(s) 1516
PspFI CCCAGC 1 cut(s) 1672
PspGI CCWGG 1 cut(s) 1516
PspN4I GGNNCC 6 cut(s) 89, 166, 1228, 1262, 1460, 1886
PspPI GGNCC 2 cut(s) 758, 1884
PspPPI RGGWCCY 1 cut(s) 1884
PspXI VCTCGAGB 1 cut(s) 306
PstI CTGCAG 1 cut(s) 1448
PsuI RGATCY 1 cut(s) 1724
PvuII CAGCTG 1 cut(s) 1781
RsaI GTAC 5 cut(s) 89, 166, 1205, 1955, 2010
RsaNI GTAC 5 cut(s) 88, 165, 1204, 1954, 2009
RseI CAYNNNNRTG 4 cut(s) 1047, 1179, 1538, 1970
SaqAI TTAA 8 cut(s) 416, 768, 896, 1287, 1404, 1436, 1581, 2196
SatI GCNGC 4 cut(s) 526, 734, 1447, 1779
Sau3AI GATC 6 cut(s) 314, 358, 1281, 1300, 1724, 2085
Sau96I GGNCC 2 cut(s) 758, 1884
ScaI AGTACT 1 cut(s) 2010
SchI GAGTC 2 cut(s) 131, 783
ScrFI CCNGG 2 cut(s) 1456, 1518
SduI GDGCHC 3 cut(s) 714, 1461, 2111
SfaNI GCATC 7 cut(s) 339, 1261, 1518, 1614, 1788, 1968, 2061
SfcI CTRYAG 1 cut(s) 1444
Sfr274I CTCGAG 1 cut(s) 306
SinI GGWCC 2 cut(s) 758, 1884
SlaI CTCGAG 1 cut(s) 306
SmiMI CAYNNNNRTG 4 cut(s) 1047, 1179, 1538, 1970
SmlI CTYRAG 2 cut(s) 31, 306
SmoI CTYRAG 2 cut(s) 31, 306
SsiI CCGC 3 cut(s) 525, 761, 1335
SspMI CTAG 3 cut(s) 411, 672, 941
StyD4I CCNGG 2 cut(s) 1454, 1516
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 3 cut(s) 176, 577, 2177
TaiI ACGT 4 cut(s) 386, 510, 1152, 1989
TaqI TCGA 7 cut(s) 307, 497, 504, 772, 1668, 1707, 1989
TatI WGTACW 1 cut(s) 2008
TauI GCSGC 1 cut(s) 528
TfiI GAWTC 5 cut(s) 72, 1099, 1759, 1812, 1840
Tru1I TTAA 8 cut(s) 416, 768, 896, 1287, 1404, 1436, 1581, 2196
Tru9I TTAA 8 cut(s) 416, 768, 896, 1287, 1404, 1436, 1581, 2196
TscAI CASTG 2 cut(s) 580, 2116
TseFI GTSAC 3 cut(s) 196, 775, 1120
TseI GCWGC 3 cut(s) 733, 1446, 1778
Tsp45I GTSAC 3 cut(s) 196, 775, 1120
TspGWI ACGGA 3 cut(s) 462, 1016, 1744
TspRI CASTG 2 cut(s) 580, 2116
Van91I CCANNNNNTGG 1 cut(s) 875
VneI GTGCAC 1 cut(s) 2107
VpaK11BI GGWCC 2 cut(s) 758, 1884
XapI RAATTY 4 cut(s) 441, 837, 970, 1663
XceI RCATGY 3 cut(s) 614, 1143, 1750
XhoI CTCGAG 1 cut(s) 306
XmnI GAANNNNTTC 3 cut(s) 1098, 1368, 2010
XspI CTAG 3 cut(s) 411, 672, 941
ZraI GACGTC 1 cut(s) 1987
ZrmI AGTACT 1 cut(s) 2010
Zsp2I ATGCAT 3 cut(s) 612, 727, 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.