Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g00550 |
| malus_domestica | MD12G1260100.v1.1 |
| prunus_persica | Prupe.6G360800_v2.0.a1 |
| pyrus_communis | pycom12g23820 |
| rosa_chinensis | RchiOBHm_Chr3g0447941 |
| rosa_laevigata | RLG00000025959 |
| rosa_roxburghii | Rroxscaffold_6G00426130 |
| rosa_rugosa | Rorug02G0607200 |
| rosa_samantha | Rh3BG006100 Rh3DG006700 |
| rosa_wichuraiana | Rw3G000510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 299 |
| Acc36I | ACCTGC | 1 cut(s) | 1583 |
| Acc65I | GGTACC | 1 cut(s) | 117 |
| AccB1I | GGYRCC | 2 cut(s) | 117, 554 |
| AccII | CGCG | 1 cut(s) | 879 |
| AciI | CCGC | 5 cut(s) | 131, 877, 1287, 1365, 1808 |
| AclI | AACGTT | 1 cut(s) | 1179 |
| AclWI | GGATC | 3 cut(s) | 1762, 1864, 1877 |
| AcoI | YGGCCR | 2 cut(s) | 874, 1585 |
| AcsI | RAATTY | 4 cut(s) | 867, 1000, 1412, 1693 |
| AcuI | CTGAAG | 1 cut(s) | 1991 |
| AcyI | GRCGYC | 2 cut(s) | 555, 965 |
| AfaI | GTAC | 5 cut(s) | 119, 1085, 1235, 2040, 2140 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 295 |
| AflIII | ACRYGT | 1 cut(s) | 1776 |
| AhlI | ACTAGT | 1 cut(s) | 701 |
| AjiI | CACGTC | 1 cut(s) | 1996 |
| AjnI | CCWGG | 1 cut(s) | 308 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 182, 214, 2028, 2060 |
| Alw21I | GWGCWC | 2 cut(s) | 1560, 2093 |
| Alw26I | GTCTC | 4 cut(s) | 20, 594, 856, 1016 |
| AlwI | GGATC | 3 cut(s) | 1762, 1864, 1877 |
| AoxI | GGCC | 2 cut(s) | 874, 1585 |
| ApeKI | GCWGC | 2 cut(s) | 1503, 1784 |
| ApoI | RAATTY | 4 cut(s) | 867, 1000, 1412, 1693 |
| AseI | ATTAAT | 1 cut(s) | 926 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1000, 2040 |
| Asp718I | GGTACC | 1 cut(s) | 117 |
| AspLEI | GCGC | 1 cut(s) | 557 |
| AspS9I | GGNCC | 4 cut(s) | 306, 312, 788, 1914 |
| AsuC2I | CCSGG | 3 cut(s) | 328, 1486, 1548 |
| AsuHPI | GGTGA | 6 cut(s) | 149, 220, 1091, 1321, 1919, 2017 |
| AvaII | GGWCC | 4 cut(s) | 306, 312, 788, 1914 |
| BamHI | GGATCC | 1 cut(s) | 1869 |
| BanI | GGYRCC | 2 cut(s) | 117, 554 |
| BauI | CACGAG | 1 cut(s) | 126 |
| BbsI | GAAGAC | 2 cut(s) | 685, 1972 |
| Bbv12I | GWGCWC | 2 cut(s) | 1560, 2093 |
| BbvI | GCAGC | 2 cut(s) | 1490, 1771 |
| BccI | CCATC | 8 cut(s) | 454, 474, 619, 769, 899, 1791, 1926, 2226 |
| BceAI | ACGGC | 1 cut(s) | 2095 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2048, 2082 |
| BciT130I | CCWGG | 1 cut(s) | 310 |
| BciVI | GTATCC | 1 cut(s) | 2097 |
| BcnI | CCSGG | 3 cut(s) | 328, 1486, 1548 |
| BcoDI | GTCTC | 4 cut(s) | 20, 594, 856, 1016 |
| BcuI | ACTAGT | 1 cut(s) | 701 |
| BfaI | CTAG | 4 cut(s) | 39, 420, 441, 702 |
| BfoI | RGCGCY | 1 cut(s) | 558 |
| BfuAI | ACCTGC | 1 cut(s) | 1583 |
| BfuI | GTATCC | 1 cut(s) | 2097 |
| BglII | AGATCT | 1 cut(s) | 2203 |
| BisI | GCNGC | 4 cut(s) | 877, 1504, 1785, 1809 |
| BlsI | GCNGC | 4 cut(s) | 878, 1505, 1786, 1810 |
| BmcAI | AGTACT | 1 cut(s) | 2040 |
| Bme1390I | CCNGG | 4 cut(s) | 310, 328, 1486, 1548 |
| Bme18I | GGWCC | 4 cut(s) | 306, 312, 788, 1914 |
| BmgBI | CACGTC | 1 cut(s) | 1996 |
| BmgT120I | GGNCC | 4 cut(s) | 306, 312, 788, 1914 |
| BmiI | GGNNCC | 7 cut(s) | 119, 556, 1258, 1292, 1871, 1916, 2216 |
| BmrFI | CCNGG | 4 cut(s) | 310, 328, 1486, 1548 |
| BmrI | ACTGGG | 1 cut(s) | 866 |
| BmsI | GCATC | 5 cut(s) | 1291, 1548, 1818, 1998, 2091 |
| BmuI | ACTGGG | 1 cut(s) | 866 |
| BpiI | GAAGAC | 2 cut(s) | 685, 1972 |
| BpuMI | CCSGG | 3 cut(s) | 328, 1486, 1548 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2208 |
| BsaHI | GRCGYC | 2 cut(s) | 555, 965 |
| BsaWI | WCCGGW | 1 cut(s) | 303 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 295 |
| Bse1I | ACTGG | 2 cut(s) | 861, 2261 |
| Bse3DI | GCAATG | 2 cut(s) | 499, 983 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2208 |
| BseBI | CCWGG | 1 cut(s) | 310 |
| BseGI | GGATG | 9 cut(s) | 217, 304, 465, 485, 514, 1206, 1609, 1918, 1957 |
| BseJI | GATNNNNATC | 1 cut(s) | 2208 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 295 |
| BseMI | GCAATG | 2 cut(s) | 499, 983 |
| BseMII | CTCAG | 6 cut(s) | 762, 828, 1545, 1655, 2120, 2186 |
| BseNI | ACTGG | 2 cut(s) | 861, 2261 |
| BseXI | GCAGC | 2 cut(s) | 1490, 1771 |
| BseYI | CCCAGC | 1 cut(s) | 1702 |
| Bsh1236I | CGCG | 1 cut(s) | 879 |
| BshFI | GGCC | 2 cut(s) | 876, 1587 |
| BshNI | GGYRCC | 2 cut(s) | 117, 554 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1560, 2093 |
| BsiSI | CCGG | 4 cut(s) | 304, 327, 1485, 1548 |
| BslFI | GGGAC | 1 cut(s) | 1900 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 295 |
| BsmAI | GTCTC | 4 cut(s) | 20, 594, 856, 1016 |
| BsmFI | GGGAC | 1 cut(s) | 1900 |
| BsnI | GGCC | 2 cut(s) | 876, 1587 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1560, 2093 |
| Bsp143I | GATC | 6 cut(s) | 1330, 1576, 1754, 1869, 1959, 2203 |
| BspACI | CCGC | 5 cut(s) | 131, 877, 1287, 1365, 1808 |
| BspANI | GGCC | 2 cut(s) | 876, 1587 |
| BspCNI | CTCAG | 6 cut(s) | 763, 827, 1546, 1654, 2121, 2185 |
| BspFNI | CGCG | 1 cut(s) | 879 |
| BspHI | TCATGA | 3 cut(s) | 1018, 1416, 2085 |
| BspLI | GGNNCC | 7 cut(s) | 119, 556, 1258, 1292, 1871, 1916, 2216 |
| BspMI | ACCTGC | 1 cut(s) | 1583 |
| BspPI | GGATC | 3 cut(s) | 1762, 1864, 1877 |
| BspT107I | GGYRCC | 2 cut(s) | 117, 554 |
| BsrDI | GCAATG | 2 cut(s) | 499, 983 |
| BsrI | ACTGG | 2 cut(s) | 861, 2261 |
| BssMI | GATC | 6 cut(s) | 1330, 1576, 1754, 1869, 1959, 2203 |
| BssNI | GRCGYC | 2 cut(s) | 555, 965 |
| BssSI | CACGAG | 1 cut(s) | 126 |
| Bst2BI | CACGAG | 1 cut(s) | 126 |
| Bst2UI | CCWGG | 1 cut(s) | 310 |
| Bst4CI | ACNGT | 3 cut(s) | 607, 1327, 1743 |
| BstACI | GRCGYC | 2 cut(s) | 555, 965 |
| BstC8I | GCNNGC | 1 cut(s) | 2067 |
| BstDEI | CTNAG | 9 cut(s) | 771, 814, 884, 1005, 1252, 1554, 1641, 2129, 2172 |
| BstF5I | GGATG | 9 cut(s) | 217, 304, 465, 485, 514, 1206, 1609, 1918, 1957 |
| BstFNI | CGCG | 1 cut(s) | 879 |
| BstH2I | RGCGCY | 1 cut(s) | 558 |
| BstHHI | GCGC | 1 cut(s) | 557 |
| BstKTI | GATC | 6 cut(s) | 1333, 1579, 1757, 1872, 1962, 2206 |
| BstMAI | GTCTC | 4 cut(s) | 20, 594, 856, 1016 |
| BstMBI | GATC | 6 cut(s) | 1330, 1576, 1754, 1869, 1959, 2203 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 388, 739, 2088 |
| BstNI | CCWGG | 1 cut(s) | 310 |
| BstNSI | RCATGY | 3 cut(s) | 1173, 1476, 1780 |
| BstSCI | CCNGG | 4 cut(s) | 308, 326, 1484, 1546 |
| BstUI | CGCG | 1 cut(s) | 879 |
| BstV1I | GCAGC | 2 cut(s) | 1490, 1771 |
| BstV2I | GAAGAC | 2 cut(s) | 685, 1972 |
| BstX2I | RGATCY | 3 cut(s) | 1754, 1869, 2203 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 110 |
| BstYI | RGATCY | 3 cut(s) | 1754, 1869, 2203 |
| BsuI | GTATCC | 1 cut(s) | 2097 |
| BsuRI | GGCC | 2 cut(s) | 876, 1587 |
| BtrI | CACGTC | 1 cut(s) | 1996 |
| BtsCI | GGATG | 9 cut(s) | 217, 304, 465, 485, 514, 1206, 1609, 1918, 1957 |
| BtsI | GCAGTG | 1 cut(s) | 155 |
| BtsIMutI | CAGTG | 1 cut(s) | 155 |
| BveI | ACCTGC | 1 cut(s) | 1583 |
| Cac8I | GCNNGC | 1 cut(s) | 2067 |
| CciI | TCATGA | 3 cut(s) | 1018, 1416, 2085 |
| CfoI | GCGC | 1 cut(s) | 557 |
| Cfr13I | GGNCC | 4 cut(s) | 306, 312, 788, 1914 |
| CseI | GACGC | 1 cut(s) | 954 |
| Csp6I | GTAC | 5 cut(s) | 118, 1084, 1234, 2039, 2139 |
| CviQI | GTAC | 5 cut(s) | 118, 1084, 1234, 2039, 2139 |
| DdeI | CTNAG | 9 cut(s) | 771, 814, 884, 1005, 1252, 1554, 1641, 2129, 2172 |
| DinI | GGCGCC | 1 cut(s) | 556 |
| DpnI | GATC | 6 cut(s) | 1332, 1578, 1756, 1871, 1961, 2205 |
| DpnII | GATC | 6 cut(s) | 1330, 1576, 1754, 1869, 1959, 2203 |
| DraI | TTTAAA | 5 cut(s) | 373, 429, 1318, 1467, 2227 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 299 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 299 |
| EaeI | YGGCCR | 2 cut(s) | 874, 1585 |
| Eco47I | GGWCC | 4 cut(s) | 306, 312, 788, 1914 |
| Eco57I | CTGAAG | 1 cut(s) | 1991 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1914 |
| EcoRI | GAATTC | 1 cut(s) | 1412 |
| EcoRII | CCWGG | 1 cut(s) | 308 |
| EcoT22I | ATGCAT | 2 cut(s) | 757, 1474 |
| EgeI | GGCGCC | 1 cut(s) | 556 |
| EheI | GGCGCC | 1 cut(s) | 556 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2028, 2060 |
| FaqI | GGGAC | 1 cut(s) | 1900 |
| FauI | CCCGC | 1 cut(s) | 1280 |
| FauNDI | CATATG | 1 cut(s) | 751 |
| Fnu4HI | GCNGC | 4 cut(s) | 877, 1504, 1785, 1809 |
| FokI | GGATG | 9 cut(s) | 224, 311, 472, 492, 521, 1193, 1616, 1905, 1964 |
| Fsp4HI | GCNGC | 4 cut(s) | 877, 1504, 1785, 1809 |
| FspBI | CTAG | 4 cut(s) | 39, 420, 441, 702 |
| GlaI | GCGC | 1 cut(s) | 556 |
| GluI | GCNGC | 4 cut(s) | 877, 1504, 1785, 1809 |
| GsaI | CCCAGC | 1 cut(s) | 1706 |
| HaeII | RGCGCY | 1 cut(s) | 558 |
| HaeIII | GGCC | 2 cut(s) | 876, 1587 |
| HapII | CCGG | 4 cut(s) | 304, 327, 1485, 1548 |
| HgaI | GACGC | 1 cut(s) | 954 |
| HhaI | GCGC | 1 cut(s) | 557 |
| Hin1I | GRCGYC | 2 cut(s) | 555, 965 |
| Hin6I | GCGC | 1 cut(s) | 555 |
| HinP1I | GCGC | 1 cut(s) | 555 |
| HincII | GTYRAC | 1 cut(s) | 1202 |
| HindII | GTYRAC | 1 cut(s) | 1202 |
| HindIII | AAGCTT | 1 cut(s) | 2063 |
| HinfI | GANTC | 6 cut(s) | 99, 152, 472, 1143, 1789, 1882 |
| HpaII | CCGG | 4 cut(s) | 304, 327, 1485, 1548 |
| HphI | GGTGA | 6 cut(s) | 149, 220, 1091, 1321, 1919, 2017 |
| Hpy166II | GTNNAC | 7 cut(s) | 1011, 1124, 1202, 1249, 1350, 1891, 2139 |
| Hpy8I | GTNNAC | 7 cut(s) | 1011, 1124, 1202, 1249, 1350, 1891, 2139 |
| HpyAV | CCTTC | 6 cut(s) | 179, 652, 697, 1384, 1493, 1966 |
| HpyCH4III | ACNGT | 3 cut(s) | 607, 1327, 1743 |
| HpyCH4IV | ACGT | 3 cut(s) | 1179, 1995, 2016 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 388, 739, 2088 |
| HpyF3I | CTNAG | 9 cut(s) | 771, 814, 884, 1005, 1252, 1554, 1641, 2129, 2172 |
| HpySE526I | ACGT | 3 cut(s) | 1179, 1995, 2016 |
| Hsp92I | GRCGYC | 2 cut(s) | 555, 965 |
| HspAI | GCGC | 1 cut(s) | 555 |
| KasI | GGCGCC | 1 cut(s) | 554 |
| KpnI | GGTACC | 1 cut(s) | 121 |
| Kzo9I | GATC | 6 cut(s) | 1330, 1576, 1754, 1869, 1959, 2203 |
| LmnI | GCTCC | 2 cut(s) | 760, 1290 |
| Lsp1109I | GCAGC | 2 cut(s) | 1490, 1771 |
| LweI | GCATC | 5 cut(s) | 1291, 1548, 1818, 1998, 2091 |
| MaeI | CTAG | 4 cut(s) | 39, 420, 441, 702 |
| MaeII | ACGT | 3 cut(s) | 1179, 1995, 2016 |
| MaeIII | GTNAC | 6 cut(s) | 64, 226, 607, 697, 805, 966 |
| MalI | GATC | 6 cut(s) | 1332, 1578, 1756, 1871, 1961, 2205 |
| MboI | GATC | 6 cut(s) | 1330, 1576, 1754, 1869, 1959, 2203 |
| MfeI | CAATTG | 1 cut(s) | 2070 |
| MflI | RGATCY | 3 cut(s) | 1754, 1869, 2203 |
| MhlI | GDGCHC | 2 cut(s) | 1560, 2093 |
| Mly113I | GGCGCC | 1 cut(s) | 555 |
| MmeI | TCCRAC | 5 cut(s) | 127, 237, 342, 686, 1897 |
| MnlI | CCTC | 7 cut(s) | 801, 1270, 1387, 1420, 1438, 1744, 1832 |
| Mph1103I | ATGCAT | 2 cut(s) | 757, 1474 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1000, 2040 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1209, 1271, 1568, 1629 |
| MspI | CCGG | 4 cut(s) | 304, 327, 1485, 1548 |
| MspR9I | CCNGG | 4 cut(s) | 310, 328, 1486, 1548 |
| MunI | CAATTG | 1 cut(s) | 2070 |
| MvaI | CCWGG | 1 cut(s) | 310 |
| MvnI | CGCG | 1 cut(s) | 879 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 388, 739, 2088 |
| NarI | GGCGCC | 1 cut(s) | 555 |
| NciI | CCSGG | 3 cut(s) | 328, 1486, 1548 |
| NdeI | CATATG | 1 cut(s) | 751 |
| NdeII | GATC | 6 cut(s) | 1330, 1576, 1754, 1869, 1959, 2203 |
| NlaIV | GGNNCC | 7 cut(s) | 119, 556, 1258, 1292, 1871, 1916, 2216 |
| NmeAIII | GCCGAG | 1 cut(s) | 1613 |
| NmuCI | GTSAC | 3 cut(s) | 226, 805, 966 |
| NsiI | ATGCAT | 2 cut(s) | 757, 1474 |
| NspI | RCATGY | 3 cut(s) | 1173, 1476, 1780 |
| PagI | TCATGA | 3 cut(s) | 1018, 1416, 2085 |
| PciI | ACATGT | 1 cut(s) | 1776 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1000, 2040 |
| PfeI | GAWTC | 6 cut(s) | 99, 152, 472, 1143, 1789, 1882 |
| PflFI | GACNNNGTC | 1 cut(s) | 803 |
| PfoI | TCCNGGA | 1 cut(s) | 308 |
| PkrI | GCNGC | 4 cut(s) | 878, 1505, 1786, 1810 |
| PluTI | GGCGCC | 1 cut(s) | 558 |
| PpuMI | RGGWCCY | 1 cut(s) | 1914 |
| PscI | ACATGT | 1 cut(s) | 1776 |
| PshBI | ATTAAT | 1 cut(s) | 926 |
| Psp1406I | AACGTT | 1 cut(s) | 1179 |
| Psp5II | RGGWCCY | 1 cut(s) | 1914 |
| Psp6I | CCWGG | 1 cut(s) | 308 |
| PspFI | CCCAGC | 1 cut(s) | 1702 |
| PspGI | CCWGG | 1 cut(s) | 308 |
| PspN4I | GGNNCC | 7 cut(s) | 119, 556, 1258, 1292, 1871, 1916, 2216 |
| PspPI | GGNCC | 4 cut(s) | 306, 312, 788, 1914 |
| PspPPI | RGGWCCY | 1 cut(s) | 1914 |
| PsuI | RGATCY | 3 cut(s) | 1754, 1869, 2203 |
| PsyI | GACNNNGTC | 1 cut(s) | 803 |
| RsaI | GTAC | 5 cut(s) | 119, 1085, 1235, 2040, 2140 |
| RsaNI | GTAC | 5 cut(s) | 118, 1084, 1234, 2039, 2139 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1209, 1271, 1568, 1629 |
| SatI | GCNGC | 4 cut(s) | 877, 1504, 1785, 1809 |
| Sau3AI | GATC | 6 cut(s) | 1330, 1576, 1754, 1869, 1959, 2203 |
| Sau96I | GGNCC | 4 cut(s) | 306, 312, 788, 1914 |
| ScaI | AGTACT | 1 cut(s) | 2040 |
| ScrFI | CCNGG | 4 cut(s) | 310, 328, 1486, 1548 |
| SduI | GDGCHC | 2 cut(s) | 1560, 2093 |
| SfaNI | GCATC | 5 cut(s) | 1291, 1548, 1818, 1998, 2091 |
| SfoI | GGCGCC | 1 cut(s) | 556 |
| SinI | GGWCC | 4 cut(s) | 306, 312, 788, 1914 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1209, 1271, 1568, 1629 |
| SpeI | ACTAGT | 1 cut(s) | 701 |
| SsiI | CCGC | 5 cut(s) | 131, 877, 1287, 1365, 1808 |
| SspDI | GGCGCC | 1 cut(s) | 554 |
| SspI | AATATT | 1 cut(s) | 1511 |
| SspMI | CTAG | 4 cut(s) | 39, 420, 441, 702 |
| StyD4I | CCNGG | 4 cut(s) | 308, 326, 1484, 1546 |
| TaaI | ACNGT | 3 cut(s) | 607, 1327, 1743 |
| TaiI | ACGT | 3 cut(s) | 1182, 1998, 2019 |
| TaqI | TCGA | 4 cut(s) | 337, 1698, 1737, 1772 |
| TaqII | GACCGA | 2 cut(s) | 172, 1187 |
| TatI | WGTACW | 2 cut(s) | 2038, 2138 |
| TauI | GCSGC | 2 cut(s) | 879, 1811 |
| TfiI | GAWTC | 6 cut(s) | 99, 152, 472, 1143, 1789, 1882 |
| TscAI | CASTG | 1 cut(s) | 162 |
| TseFI | GTSAC | 3 cut(s) | 226, 805, 966 |
| TseI | GCWGC | 2 cut(s) | 1503, 1784 |
| Tsp45I | GTSAC | 3 cut(s) | 226, 805, 966 |
| TspRI | CASTG | 1 cut(s) | 162 |
| Tth111I | GACNNNGTC | 1 cut(s) | 803 |
| VpaK11BI | GGWCC | 4 cut(s) | 306, 312, 788, 1914 |
| VspI | ATTAAT | 1 cut(s) | 926 |
| XapI | RAATTY | 4 cut(s) | 867, 1000, 1412, 1693 |
| XceI | RCATGY | 3 cut(s) | 1173, 1476, 1780 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1000, 2040 |
| XspI | CTAG | 4 cut(s) | 39, 420, 441, 702 |
| ZrmI | AGTACT | 1 cut(s) | 2040 |
| Zsp2I | ATGCAT | 2 cut(s) | 757, 1474 |