RLG00000025959

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018050
Physical Location & Seq
Forward (+)
49498358 .. 49500589
2232 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025959

Sequence Viewer

Length: 2232 bp
ATGAGACGGGCTTATCTGAGCACCAGTTGCATCAGCTCTAATTCATTATTGAAGCATATCCATAATTGTCGCTATTGCGCCAACCCGTTCGAGTTTCAGAGATTCCAGCACTCTGGTTACCATTCACTCCCTGATATTCATCATGCCAAGTTGGTCAAGGATGGTTGTTTGCACCATTTGAATGTGGGGAACTTTGTTGTTAGTCTGTACATGAAATCTAAAAACTTGGACTCTGCACACAAGCTGTTCGGTGAAATGCCCGAGAGAGATGTCCGGTCATGGACTATACTCATCTCTGGGTTTGCTCGGACTGGAGCTTGTACAACGGTGCTGGAGCTTTTCAAGGGGATGCAAGCTGAGCGTGTTTGTCCGAACCAATTCACGCTATCGAGTGTTTTGAAGAGTTGTTCTAGTTTAAGCGATTTTCGGATGGGGAAGGGAGTCCATGGATGGATATTGAGAAATGGGATTGAATTGGATGTGGTGTTAGAGAACTCAATGCTTGATGTTTACGTCAAATGTGGAGAGTTGGATTATGCGGAAAGGTTGTTTGAGACTATGAAAGAGAGAGATACAGTTAGTTGGAATATAATGATGGGTGCATATATGCATGTTGGGGACATGGAGAAGGCTCTTGAGTTGTTCAGAAGGTTACCCTCCAAAGATGTTGCTAGTTGGAATACAATCGTATACGGGTTGATGCAAAACGGGGATGGAAGGTCTGCATTGGAGCTACTTTATGAGATGGTGGAAAATGGAGTTGCATTCGAGGATGTTACTTTCTCCGTAGCTCTCGGTTTGGCTTCATCTTTGTATGTTCTGGAACTCGGGACACAGATTCATGGCTATCTTGTAAGGCGTGGTATTGAAAATGATGGATTTCTTCGAACTTCGTTGATAGATATGTATTGCAAATGTGGGAGAATGGACAAGGCATCACTGATATTCAAAAGAATGCCTCTTAGGGCAAAGTCTAAGTTTACATCTGACGAGACGAAGACTGAAATCGTATCATGGAGTTCAATGGTTTCTGGGTATGTTCGTAACGGTGAGCATGAATATGCTTTGATAACTTTCCGTTCTATGCTTCGTAAAAAGATTATGGTGGATAGATTCTCTGTGACCAGTGTTGTTTCTGCATGTGCCAACCTTGGCATTTTACTTCTGGGTCAAAACATCCATGCACTCGTTCAGAAAATCGGGTACATATTAGATGTTCATTTAGGTTCCTGCTATATTGATATGTATGCTAAATGTGGGAGTCCAAGTGATGCTTTGATGATTTTTAAACAAACTATTGATCCAAATGTTGTTCTGTGGACTTCAACGATTTCTGCTTGCGCTTTACATGGGCAAGGGAAGGAGGCTATACGACTCTTTGAACTCATGATAAGGGAGGGAATTAAACCGAATGAGGTTACTTTCGTGGTGGTTTTAAATGCTTGCAGCCATGCAGGGCTCATTGAAGAAGGCTTCAAATATTTCAGCTTGATGAAAGAAGATTATGGCATCAAGCCCGGAACTGAACACTTCACCTGTATGGTTGATCTTTATGGTCGTGCAGGTCGCTTGGAGGAGACTAAGGAGTTCATTCATGAAAACGGCATCTCTCACTTGGGTTCAGTTTGGAAGTCATTTCTATCTGCTTGCCGGCTTCATAAAAATTTAGAGCTGGGAAAGTGGGTTTCTGAAAAGCTACTTCAACTCGAACCTTCTGATGAGGGGCCTTATGTTTTGATGTCAAACATGTGTGCTGTGAATCACAGATGGGAAGAAGCAGCTGCAATGAGGAGGTTGATGCAACAGAGAGGAATTAACAAAGTCCCCGGTCAATCTTGGATCCAACTGAAGAATCAAGTTCACTCCTTCGCGATGGGAGACCGGTGTCATCCACATTCCACTCAGATATATTTATACTTGGATGAACTTATTGCAAGATTGAAGGCAATCGGGTATTCAATGGATGCAAAGCTGGTGATGCAGGACGTAGAAGAAGAACAAGGAGAAGTACTTCTTGGTCATCACAGTGAAAAGCTTGCTATTGCCTATGGCATAATTAGCACGGCTTCTGGGATACCTATTCGGATAATGAAGAACCTTAGAGTGTGTAGTGATTGTCACAACTTCATTAAATATACTTCTCAGCTTTTAGATAGGGAAATAATTGTCAGAGACCTTCATCGGTTCCATCATTTTAAGCATGGGAGCTGCTCCTGTGGAGATTATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 UPF0016

Protein Analysis

744

Amino Acids

84.27

Weight (kDa)

7.77

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 90 - 137 1.8e-06 PPR repeat family
PPR_2 PF13041 190 - 221 3.6e-06 PPR repeat family
PPR PF01535 193 - 222 1.5e-06 PPR repeat
PPR_2 PF13041 221 - 265 3e-07 PPR repeat family
PPR_2 PF13041 336 - 383 2.4e-06 PPR repeat family
PPR_3 PF13812 431 - 482 1.6e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 435 - 483 7.3e-12 PPR repeat family
E_motif PF20431 553 - 615 3.5e-15 E motif
Eplus_motif PF20430 620 - 647 4.4e-06 E+ motif
DYW_deaminase PF14432 651 - 743 3.1e-39 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018050)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00550
malus_domestica MD12G1260100.v1.1
prunus_persica Prupe.6G360800_v2.0.a1
pyrus_communis pycom12g23820
rosa_chinensis RchiOBHm_Chr3g0447941
rosa_laevigata RLG00000025959
rosa_roxburghii Rroxscaffold_6G00426130
rosa_rugosa Rorug02G0607200
rosa_samantha Rh3BG006100 Rh3DG006700
rosa_wichuraiana Rw3G000510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1553
AccI GTMKAC 1 cut(s) 690
AccII CGCG 1 cut(s) 1871
AciI CCGC 1 cut(s) 539
AclWI GGATC 3 cut(s) 1295, 1834, 1847
AcsI RAATTY 1 cut(s) 1663
AcuI CTGAAG 1 cut(s) 1868
AfaI GTAC 4 cut(s) 209, 322, 1205, 2010
AflIII ACRYGT 1 cut(s) 1746
AgeI ACCGGT 1 cut(s) 1881
AjuI GAANNNNNNNTTGG 2 cut(s) 1998, 2030
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 5 cut(s) 548, 986, 1571, 1872, 2166
AlwI GGATC 3 cut(s) 1295, 1834, 1847
Ama87I CYCGRG 2 cut(s) 260, 827
AoxI GGCC 1 cut(s) 1724
ApeKI GCWGC 4 cut(s) 1446, 1778, 1781, 2208
ApoI RAATTY 1 cut(s) 1663
AsiGI ACCGGT 1 cut(s) 1881
Asp700I GAANNNNTTC 2 cut(s) 377, 2010
AspLEI GCGC 2 cut(s) 80, 1343
AspS9I GGNCC 1 cut(s) 1724
AsuC2I CCSGG 2 cut(s) 1518, 1827
AsuHPI GGTGA 4 cut(s) 263, 1061, 1525, 1987
AsuII TTCGAA 1 cut(s) 886
AvaI CYCGRG 2 cut(s) 260, 827
BamHI GGATCC 1 cut(s) 1839
BanII GRGCYC 1 cut(s) 1461
BbsI GAAGAC 1 cut(s) 1004
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 4 cut(s) 1458, 1768, 1790, 2195
BceAI ACGGC 2 cut(s) 1618, 2079
BciVI GTATCC 1 cut(s) 2067
BcnI CCSGG 2 cut(s) 1518, 1827
BcoDI GTCTC 5 cut(s) 548, 986, 1571, 1872, 2166
BfaI CTAG 2 cut(s) 411, 672
BfuAI ACCTGC 1 cut(s) 1553
BfuI GTATCC 1 cut(s) 2067
BisI GCNGC 4 cut(s) 1447, 1779, 1782, 2209
BlpI GCTNAGC 1 cut(s) 357
BlsI GCNGC 4 cut(s) 1448, 1780, 1783, 2210
BmcAI AGTACT 1 cut(s) 2010
Bme1390I CCNGG 2 cut(s) 1518, 1827
BmeT110I CYCGRG 2 cut(s) 260, 827
BmgT120I GGNCC 1 cut(s) 1724
BmiI GGNNCC 4 cut(s) 1228, 1725, 1841, 2186
BmrFI CCNGG 2 cut(s) 1518, 1827
BoxI GACNNNNGTC 1 cut(s) 1884
BpiI GAAGAC 1 cut(s) 1004
BpmI CTGGAG 2 cut(s) 333, 353
Bpu1102I GCTNAGC 1 cut(s) 357
Bpu14I TTCGAA 1 cut(s) 886
BpuEI CTTGAG 1 cut(s) 656
BpuMI CCSGG 2 cut(s) 1518, 1827
BsaBI GATNNNNATC 1 cut(s) 138
BsaI GGTCTC 2 cut(s) 1872, 2166
BsaJI CCNNGG 3 cut(s) 445, 1150, 1825
BsaWI WCCGGW 2 cut(s) 273, 1881
BsaXI ACNNNNNCTCC 2 cut(s) 1252, 1282
Bse118I RCCGGY 2 cut(s) 1650, 1881
Bse1I ACTGG 3 cut(s) 24, 316, 1125
Bse3DI GCAATG 1 cut(s) 1791
Bse8I GATNNNNATC 1 cut(s) 138
BseDI CCNNGG 3 cut(s) 445, 1150, 1825
BseJI GATNNNNATC 1 cut(s) 138
BseMI GCAATG 1 cut(s) 1791
BseMII CTCAG 4 cut(s) 8, 348, 1916, 2156
BseNI ACTGG 3 cut(s) 24, 316, 1125
BseRI GAGGAG 2 cut(s) 1589, 1804
BseXI GCAGC 4 cut(s) 1458, 1768, 1790, 2195
BseYI CCCAGC 1 cut(s) 1672
BsgI GTGCAG 2 cut(s) 219, 1581
Bsh1236I CGCG 1 cut(s) 1871
BshFI GGCC 1 cut(s) 1726
BshTI ACCGGT 1 cut(s) 1881
BsiHKAI GWGCWC 1 cut(s) 23
BsiHKCI CYCGRG 2 cut(s) 260, 827
BsiSI CCGG 5 cut(s) 274, 1518, 1651, 1827, 1882
BslFI GGGAC 3 cut(s) 632, 844, 1808
BsmAI GTCTC 5 cut(s) 548, 986, 1571, 1872, 2166
BsmBI CGTCTC 1 cut(s) 986
BsmFI GGGAC 3 cut(s) 632, 844, 1808
BsmI GAATGC 2 cut(s) 764, 960
BsnI GGCC 1 cut(s) 1726
Bso31I GGTCTC 2 cut(s) 1872, 2166
BsoBI CYCGRG 2 cut(s) 260, 827
Bsp119I TTCGAA 1 cut(s) 886
Bsp1286I GDGCHC 2 cut(s) 23, 1461
Bsp1407I TGTACA 2 cut(s) 207, 320
Bsp143I GATC 3 cut(s) 1300, 1546, 1839
Bsp1720I GCTNAGC 1 cut(s) 357
Bsp19I CCATGG 1 cut(s) 445
Bsp68I TCGCGA 1 cut(s) 1871
BspACI CCGC 1 cut(s) 539
BspANI GGCC 1 cut(s) 1726
BspCNI CTCAG 4 cut(s) 9, 349, 1915, 2155
BspFNI CGCG 1 cut(s) 1871
BspHI TCATGA 2 cut(s) 1386, 1594
BspLI GGNNCC 4 cut(s) 1228, 1725, 1841, 2186
BspMI ACCTGC 1 cut(s) 1553
BspPI GGATC 3 cut(s) 1295, 1834, 1847
BspT104I TTCGAA 1 cut(s) 886
BspTNI GGTCTC 2 cut(s) 1872, 2166
BsrDI GCAATG 1 cut(s) 1791
BsrFI RCCGGY 2 cut(s) 1650, 1881
BsrGI TGTACA 2 cut(s) 207, 320
BsrI ACTGG 3 cut(s) 24, 316, 1125
BssAI RCCGGY 2 cut(s) 1650, 1881
BssECI CCNNGG 3 cut(s) 445, 1150, 1825
BssMI GATC 3 cut(s) 1300, 1546, 1839
BssNAI GTATAC 1 cut(s) 691
BssT1I CCWWGG 2 cut(s) 445, 1150
Bst1107I GTATAC 1 cut(s) 691
Bst4CI ACNGT 4 cut(s) 328, 577, 1049, 2027
Bst6I CTCTTC 1 cut(s) 395
BstAPI GCANNNNNTGC 1 cut(s) 27
BstAUI TGTACA 2 cut(s) 207, 320
BstBI TTCGAA 1 cut(s) 886
BstC8I GCNNGC 6 cut(s) 354, 1339, 1444, 1648, 1652, 2037
BstDEI CTNAG 8 cut(s) 17, 357, 962, 975, 1581, 1902, 2099, 2142
BstDSI CCRYGG 1 cut(s) 445
BstEII GGTNACC 2 cut(s) 116, 651
BstFNI CGCG 1 cut(s) 1871
BstHHI GCGC 2 cut(s) 80, 1343
BstKTI GATC 3 cut(s) 1303, 1549, 1842
BstMAI GTCTC 5 cut(s) 548, 986, 1571, 1872, 2166
BstMBI GATC 3 cut(s) 1300, 1546, 1839
BstMWI GCNNNNNNNGC 4 cut(s) 27, 358, 1978, 2058
BstNSI RCATGY 3 cut(s) 614, 1143, 1750
BstPAI GACNNNNGTC 1 cut(s) 1884
BstPI GGTNACC 2 cut(s) 116, 651
BstSCI CCNGG 2 cut(s) 1516, 1825
BstUI CGCG 1 cut(s) 1871
BstV1I GCAGC 4 cut(s) 1458, 1768, 1790, 2195
BstV2I GAAGAC 1 cut(s) 1004
BstX2I RGATCY 1 cut(s) 1839
BstXI CCANNNNNNTGG 1 cut(s) 113
BstYI RGATCY 1 cut(s) 1839
BstZ17I GTATAC 1 cut(s) 691
BsuI GTATCC 1 cut(s) 2067
BsuRI GGCC 1 cut(s) 1726
BtgI CCRYGG 1 cut(s) 445
BtgZI GCGATG 1 cut(s) 1886
BtsIMutI CAGTG 3 cut(s) 938, 1132, 2032
BtuMI TCGCGA 1 cut(s) 1871
BveI ACCTGC 1 cut(s) 1553
Cac8I GCNNGC 6 cut(s) 354, 1339, 1444, 1648, 1652, 2037
CciI TCATGA 2 cut(s) 1386, 1594
CfoI GCGC 2 cut(s) 80, 1343
Cfr10I RCCGGY 2 cut(s) 1650, 1881
Cfr13I GGNCC 1 cut(s) 1724
Csp6I GTAC 4 cut(s) 208, 321, 1204, 2009
CspAI ACCGGT 1 cut(s) 1881
CviQI GTAC 4 cut(s) 208, 321, 1204, 2009
DdeI CTNAG 8 cut(s) 17, 357, 962, 975, 1581, 1902, 2099, 2142
DpnI GATC 3 cut(s) 1302, 1548, 1841
DpnII GATC 3 cut(s) 1300, 1546, 1839
DraI TTTAAA 2 cut(s) 1288, 1437
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
Eco130I CCWWGG 2 cut(s) 445, 1150
Eco24I GRGCYC 1 cut(s) 1461
Eco31I GGTCTC 2 cut(s) 1872, 2166
Eco57I CTGAAG 1 cut(s) 1868
Eco88I CYCGRG 2 cut(s) 260, 827
Eco91I GGTNACC 2 cut(s) 116, 651
EcoO109I RGGNCCY 1 cut(s) 1724
EcoO65I GGTNACC 2 cut(s) 116, 651
EcoT14I CCWWGG 2 cut(s) 445, 1150
EcoT22I ATGCAT 1 cut(s) 612
EcoT38I GRGCYC 1 cut(s) 1461
ErhI CCWWGG 2 cut(s) 445, 1150
Esp3I CGTCTC 1 cut(s) 986
FalI AAGNNNNNCTT 4 cut(s) 1258, 1290, 1998, 2030
FaqI GGGAC 3 cut(s) 632, 844, 1808
FblI GTMKAC 1 cut(s) 690
Fnu4HI GCNGC 4 cut(s) 1447, 1779, 1782, 2209
FriOI GRGCYC 1 cut(s) 1461
Fsp4HI GCNGC 4 cut(s) 1447, 1779, 1782, 2209
FspBI CTAG 2 cut(s) 411, 672
GlaI GCGC 2 cut(s) 79, 1342
GluI GCNGC 4 cut(s) 1447, 1779, 1782, 2209
GsaI CCCAGC 1 cut(s) 1676
GsuI CTGGAG 2 cut(s) 333, 353
HaeIII GGCC 1 cut(s) 1726
HapII CCGG 5 cut(s) 274, 1518, 1651, 1827, 1882
HhaI GCGC 2 cut(s) 80, 1343
Hin6I GCGC 2 cut(s) 78, 1341
HinP1I GCGC 2 cut(s) 78, 1341
HindIII AAGCTT 1 cut(s) 2033
HinfI GANTC 9 cut(s) 102, 230, 441, 838, 1113, 1261, 1374, 1759, 1852
HpaII CCGG 5 cut(s) 274, 1518, 1651, 1827, 1882
HphI GGTGA 4 cut(s) 263, 1061, 1525, 1987
Hpy166II GTNNAC 5 cut(s) 511, 691, 981, 1320, 1861
Hpy188III TCNNGA 6 cut(s) 635, 821, 829, 1387, 1595, 1870
Hpy8I GTNNAC 5 cut(s) 511, 691, 981, 1320, 1861
HpyCH4III ACNGT 4 cut(s) 328, 577, 1049, 2027
HpyCH4IV ACGT 2 cut(s) 513, 1986
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 358, 1978, 2058
HpyF3I CTNAG 8 cut(s) 17, 357, 962, 975, 1581, 1902, 2099, 2142
HpySE526I ACGT 2 cut(s) 513, 1986
HspAI GCGC 2 cut(s) 78, 1341
KroI GCCGGC 1 cut(s) 1650
KroNI GCCGGC 1 cut(s) 1652
Kzo9I GATC 3 cut(s) 1300, 1546, 1839
LmnI GCTCC 5 cut(s) 314, 334, 730, 2205, 2216
Lsp1109I GCAGC 4 cut(s) 1458, 1768, 1790, 2195
MaeI CTAG 2 cut(s) 411, 672
MaeII ACGT 2 cut(s) 513, 1986
MaeIII GTNAC 7 cut(s) 116, 651, 775, 1043, 1120, 1417, 2117
MalI GATC 3 cut(s) 1302, 1548, 1841
MboI GATC 3 cut(s) 1300, 1546, 1839
MflI RGATCY 1 cut(s) 1839
MhlI GDGCHC 2 cut(s) 23, 1461
MluCI AATT 9 cut(s) 40, 64, 377, 473, 1401, 1663, 1812, 2055, 2163
MlyI GAGTC 4 cut(s) 224, 450, 1270, 1368
MmeI TCCRAC 4 cut(s) 510, 563, 656, 1867
Mph1103I ATGCAT 1 cut(s) 612
MroNI GCCGGC 1 cut(s) 1650
MroXI GAANNNNTTC 2 cut(s) 377, 2010
MseI TTAA 7 cut(s) 416, 1287, 1404, 1436, 1815, 2130, 2196
MslI CAYNNNNRTG 4 cut(s) 180, 1059, 1538, 2025
MspA1I CMGCKG 1 cut(s) 1781
MspI CCGG 5 cut(s) 274, 1518, 1651, 1827, 1882
MspR9I CCNGG 2 cut(s) 1518, 1827
Mva1269I GAATGC 2 cut(s) 764, 960
MvnI CGCG 1 cut(s) 1871
MwoI GCNNNNNNNGC 4 cut(s) 27, 358, 1978, 2058
NaeI GCCGGC 1 cut(s) 1652
NciI CCSGG 2 cut(s) 1518, 1827
NcoI CCATGG 1 cut(s) 445
NdeII GATC 3 cut(s) 1300, 1546, 1839
NgoMIV GCCGGC 1 cut(s) 1650
NlaIV GGNNCC 4 cut(s) 1228, 1725, 1841, 2186
NmuCI GTSAC 2 cut(s) 1120, 2117
NruI TCGCGA 1 cut(s) 1871
NsiI ATGCAT 1 cut(s) 612
NspI RCATGY 3 cut(s) 614, 1143, 1750
NspV TTCGAA 1 cut(s) 886
PagI TCATGA 2 cut(s) 1386, 1594
PciI ACATGT 1 cut(s) 1746
PctI GAATGC 2 cut(s) 764, 960
PdiI GCCGGC 1 cut(s) 1652
PdmI GAANNNNTTC 2 cut(s) 377, 2010
PfeI GAWTC 5 cut(s) 102, 838, 1113, 1759, 1852
PinAI ACCGGT 1 cut(s) 1881
PkrI GCNGC 4 cut(s) 1448, 1780, 1783, 2210
PleI GAGTC 4 cut(s) 224, 449, 1269, 1368
PpsI GAGTC 4 cut(s) 224, 449, 1269, 1368
PscI ACATGT 1 cut(s) 1746
PshAI GACNNNNGTC 1 cut(s) 1884
PspEI GGTNACC 2 cut(s) 116, 651
PspFI CCCAGC 1 cut(s) 1672
PspN4I GGNNCC 4 cut(s) 1228, 1725, 1841, 2186
PspPI GGNCC 1 cut(s) 1724
PsuI RGATCY 1 cut(s) 1839
PvuII CAGCTG 1 cut(s) 1781
RruI TCGCGA 1 cut(s) 1871
RsaI GTAC 4 cut(s) 209, 322, 1205, 2010
RsaNI GTAC 4 cut(s) 208, 321, 1204, 2009
RseI CAYNNNNRTG 4 cut(s) 180, 1059, 1538, 2025
SaqAI TTAA 7 cut(s) 416, 1287, 1404, 1436, 1815, 2130, 2196
SatI GCNGC 4 cut(s) 1447, 1779, 1782, 2209
Sau3AI GATC 3 cut(s) 1300, 1546, 1839
Sau96I GGNCC 1 cut(s) 1724
ScaI AGTACT 1 cut(s) 2010
SchI GAGTC 4 cut(s) 224, 450, 1270, 1368
ScrFI CCNGG 2 cut(s) 1518, 1827
SduI GDGCHC 2 cut(s) 23, 1461
SfuI TTCGAA 1 cut(s) 886
SmiMI CAYNNNNRTG 4 cut(s) 180, 1059, 1538, 2025
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
Sse9I AATT 9 cut(s) 40, 64, 377, 473, 1401, 1663, 1812, 2055, 2163
SsiI CCGC 1 cut(s) 539
SspI AATATT 1 cut(s) 1481
SspMI CTAG 2 cut(s) 411, 672
StyD4I CCNGG 2 cut(s) 1516, 1825
StyI CCWWGG 2 cut(s) 445, 1150
TaaI ACNGT 4 cut(s) 328, 577, 1049, 2027
TaiI ACGT 2 cut(s) 516, 1989
TaqI TCGA 5 cut(s) 90, 389, 768, 886, 1707
TasI AATT 9 cut(s) 40, 64, 377, 473, 1401, 1663, 1812, 2055, 2163
TatI WGTACW 3 cut(s) 207, 320, 2008
TfiI GAWTC 5 cut(s) 102, 838, 1113, 1759, 1852
Tru1I TTAA 7 cut(s) 416, 1287, 1404, 1436, 1815, 2130, 2196
Tru9I TTAA 7 cut(s) 416, 1287, 1404, 1436, 1815, 2130, 2196
TscAI CASTG 3 cut(s) 945, 1132, 2032
TseFI GTSAC 2 cut(s) 1120, 2117
TseI GCWGC 4 cut(s) 1446, 1778, 1781, 2208
Tsp45I GTSAC 2 cut(s) 1120, 2117
TspGWI ACGGA 2 cut(s) 775, 1067
TspRI CASTG 3 cut(s) 945, 1132, 2032
XapI RAATTY 1 cut(s) 1663
XceI RCATGY 3 cut(s) 614, 1143, 1750
XmiI GTMKAC 1 cut(s) 690
XmnI GAANNNNTTC 2 cut(s) 377, 2010
XspI CTAG 2 cut(s) 411, 672
ZrmI AGTACT 1 cut(s) 2010
Zsp2I ATGCAT 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.