FvH4_6g01140

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015641
Physical Location & Seq
Forward (+)
621393 .. 623401
2009 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01140.t1

Sequence Viewer

Length: 1443 bp
ATGTGCTCACCACTTTGTCCCAAGCATTGGCCTGCCAAGCCTTTAGAACGCAGGGCGGTCCTTAATGATCTTTACGATGGCAGCAGCGACTGCTCCAAAGTAAACTTGGCAGAGATTAAGCAAGGGAAGGAGTACCAAGACGCATTGAACTTTTGTTCTCAATTTGGCAATGCTTCTTCTTCATTTGATGCCGTCTGTACCCCTTGCTCCGCTGCCGTGGGAAATCTTAAGCAACATTTGTTGGACCGGTATCATCAGAAGAATGATAACAACAAAACCGAAGATTCGATATGCGGTGTAGCTGCGGTTATTTCCGTTGCAGCCGGGAACATTTCGAATGCTTATATTGACGACTACTTTGGGTGTATGACTAAGTTCGACAAGTTCGAACCAGGTTACTTCAAACTCAAATATTCCCTTGTAGAAGCGATACTTTCGATCATGATAGCCATCACTGGACTAGTGCTGATAGTCATGCTGATAAAACACGTAACGAAGAAGAAGCCCCTAAAACCGATTCTCTCAGGATCAACGACTACTACGTGGTCTGGCCTGTATAGATTCTCCAAGGCTGAGATTGAGAATGCCATAAATTACGGACCTGAAAGAAAGCACCTTGGACGAGGAAGTGCAGGTCATGTTTATAAAGGGGTTCTTCCTAGCGGACAAGTTGTGGCCGTTAAGCACATCAACAAGAGTAACATATCAGATTCTTTCACAAGAGAAGTGGAACAGCTCTCTAGGGTTCGACACCCGAACTTGGTTTGCCTCTTTGGTTGCTGTGTCGAAGACGGCGAGCAATATCTTGTGTATGAATATTGCTCATCAGGGAATCTGGCTCAACATCTTCTAAGAAATGATCCTGTATTGACATGGGAGAGAAGGGTTAAGATTCTCAGAGACTGTGCGCTTGCTTTGAGGTATCTACACCACTATATTGATGGCTGCATAGTTCACAGAGATATTAAGCTGACGAACATCCTTTTGACTGAGAACTTGGACCCCAAGCTATCAGACTTTGGGTTGGCAAAGATGTTGGGGATGGAGGAGAGCAAAGTATTTACAGATGTTAGAGGAACAATAGGGTACATGGATCCAGAGTACATGACCAATGCCAAATTAACCTGTGCCAGTGATGTCTATAGTTTTGGTATCGTTACCCTGCAACTTCTGTCAGGGCAGAAAGTGTTTGAGCTTGATCTTGATGCGAGAGATCAACTCACAAGAAAGGCGAAGGATGTGAGTTTGAACAAGCGTCCACCCGAGGATCTTGAAGACCCAAGACTAAATGGAAATGTCAACAAGGCTGACTTTGATTCGATTCTACAAATTGCAGTACTTTGTGTTGCCAAATCAAGCAAGGGTCGCCCTACGGTTGACGATGTCTTTGAAGAGATGGACAAGGCTTGGAAGAACACTGTAGCAGAAATGGTGAGCCTTTGA

Protein Analysis

481

Amino Acids

53.54

Weight (kDa)

7.13

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 203 - 464 1e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 204 - 411 1.3e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015641)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01140
malus_domestica MD04G1236100.v1.1 MD12G1255100.v1.1
prunus_persica Prupe.6G356000_v2.0.a1
pyrus_communis pycom04g20980 pycom12g23380
rosa_chinensis RchiOBHm_Chr3g0448671
rosa_laevigata RLG00000025880
rosa_multiflora Rmu_sc0003116.1_g000033
rosa_roxburghii Rroxscaffold_6G00426940
rosa_rugosa Rorug02G0615200
rosa_samantha Rh3AG014000 Rh3BG013800 Rh3CG012900 Rh3DG014600
rosa_wichuraiana Rw3G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 645
Acc36I ACCTGC 1 cut(s) 623
AccB7I CCANNNNNTGG 1 cut(s) 27
AciI CCGC 5 cut(s) 56, 210, 294, 305, 663
AclWI GGATC 5 cut(s) 535, 854, 1088, 1101, 1275
AcoI YGGCCR 1 cut(s) 675
AfaI GTAC 5 cut(s) 134, 199, 1088, 1103, 1338
AfiI CCNNNNNNNGG 2 cut(s) 27, 760
AflII CTTAAG 1 cut(s) 227
AflIII ACRYGT 1 cut(s) 487
AgeI ACCGGT 1 cut(s) 246
AgsI TTSAA 5 cut(s) 148, 403, 1249, 1274, 1391
AhlI ACTAGT 1 cut(s) 460
AjnI CCWGG 1 cut(s) 391
AluBI AGCT 5 cut(s) 302, 736, 970, 1009, 1195
AluI AGCT 5 cut(s) 302, 736, 970, 1009, 1195
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 894
AlwI GGATC 5 cut(s) 535, 854, 1088, 1101, 1275
AlwNI CAGNNNCTG 2 cut(s) 90, 903
Ama87I CYCGRG 1 cut(s) 1262
AoxI GGCC 3 cut(s) 29, 550, 675
ApeKI GCWGC 6 cut(s) 81, 84, 212, 302, 320, 945
ArsI GACNNNNNNTTYG 4 cut(s) 341, 373, 1370, 1402
AsiGI ACCGGT 1 cut(s) 246
AspLEI GCGC 1 cut(s) 910
AspS9I GGNCC 4 cut(s) 58, 244, 599, 1000
AsuC2I CCSGG 1 cut(s) 325
AsuII TTCGAA 2 cut(s) 335, 387
AvaI CYCGRG 1 cut(s) 1262
AvaII GGWCC 4 cut(s) 58, 244, 599, 1000
BamHI GGATCC 1 cut(s) 1093
BbsI GAAGAC 2 cut(s) 795, 1281
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 6 cut(s) 93, 96, 199, 289, 332, 932
BccI CCATC 5 cut(s) 71, 458, 935, 1036, 1390
BceAI ACGGC 4 cut(s) 176, 200, 662, 808
BciT130I CCWGG 1 cut(s) 393
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 1 cut(s) 894
BcuI ACTAGT 1 cut(s) 460
BfaI CTAG 3 cut(s) 461, 660, 741
BfmI CTRYAG 2 cut(s) 1141, 1419
BfrI CTTAAG 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 623
BisI GCNGC 6 cut(s) 82, 85, 213, 303, 321, 946
BlsI GCNGC 6 cut(s) 83, 86, 214, 304, 322, 947
BmcAI AGTACT 1 cut(s) 1338
Bme1390I CCNGG 2 cut(s) 325, 393
Bme18I GGWCC 4 cut(s) 58, 244, 599, 1000
BmeT110I CYCGRG 1 cut(s) 1262
BmgT120I GGNCC 4 cut(s) 58, 244, 599, 1000
BmiI GGNNCC 2 cut(s) 1002, 1095
BmrFI CCNGG 2 cut(s) 325, 393
BmsI GCATC 2 cut(s) 178, 1195
BpiI GAAGAC 2 cut(s) 795, 1281
BplI GAGNNNNNCTC 2 cut(s) 1203, 1235
Bpu14I TTCGAA 2 cut(s) 335, 387
BpuMI CCSGG 1 cut(s) 325
BsaAI YACGTR 2 cut(s) 490, 543
BsaBI GATNNNNATC 1 cut(s) 449
BsaJI CCNNGG 4 cut(s) 216, 567, 616, 1263
BsaWI WCCGGW 1 cut(s) 246
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 760
Bse118I RCCGGY 1 cut(s) 246
Bse1I ACTGG 2 cut(s) 460, 1131
Bse3DI GCAATG 1 cut(s) 175
Bse8I GATNNNNATC 1 cut(s) 449
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 4 cut(s) 216, 567, 616, 1263
BseGI GGATG 3 cut(s) 978, 1047, 1243
BseJI GATNNNNATC 1 cut(s) 449
BseLI CCNNNNNNNGG 2 cut(s) 27, 760
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 4 cut(s) 537, 564, 910, 981
BseNI ACTGG 2 cut(s) 460, 1131
BseRI GAGGAG 1 cut(s) 1061
BseXI GCAGC 6 cut(s) 93, 96, 199, 289, 332, 932
BsgI GTGCAG 1 cut(s) 651
BshFI GGCC 3 cut(s) 31, 552, 677
BshTI ACCGGT 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 1262
BsiSI CCGG 2 cut(s) 247, 324
BslFI GGGAC 1 cut(s) 3
BslI CCNNNNNNNGG 2 cut(s) 27, 760
BsmAI GTCTC 1 cut(s) 894
BsmFI GGGAC 1 cut(s) 3
BsmI GAATGC 2 cut(s) 343, 589
BsnI GGCC 3 cut(s) 31, 552, 677
BsoBI CYCGRG 1 cut(s) 1262
Bsp119I TTCGAA 2 cut(s) 335, 387
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 8 cut(s) 67, 438, 527, 859, 1093, 1198, 1213, 1267
BspACI CCGC 5 cut(s) 56, 210, 294, 305, 663
BspANI GGCC 3 cut(s) 31, 552, 677
BspCNI CTCAG 4 cut(s) 536, 565, 909, 982
BspHI TCATGA 1 cut(s) 441
BspLI GGNNCC 2 cut(s) 1002, 1095
BspMI ACCTGC 1 cut(s) 623
BspPI GGATC 5 cut(s) 535, 854, 1088, 1101, 1275
BspT104I TTCGAA 2 cut(s) 335, 387
BspTI CTTAAG 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 246
BsrI ACTGG 2 cut(s) 460, 1131
BssAI RCCGGY 1 cut(s) 246
BssECI CCNNGG 4 cut(s) 216, 567, 616, 1263
BssMI GATC 8 cut(s) 67, 438, 527, 859, 1093, 1198, 1213, 1267
BssT1I CCWWGG 2 cut(s) 567, 616
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 3 cut(s) 905, 1375, 1420
Bst6I CTCTTC 1 cut(s) 1386
BstAFI CTTAAG 1 cut(s) 227
BstAPI GCANNNNNTGC 1 cut(s) 90
BstBAI YACGTR 2 cut(s) 490, 543
BstBI TTCGAA 2 cut(s) 335, 387
BstC8I GCNNGC 3 cut(s) 33, 797, 912
BstDEI CTNAG 6 cut(s) 372, 523, 573, 851, 896, 990
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 3 cut(s) 978, 1047, 1243
BstHHI GCGC 1 cut(s) 910
BstKTI GATC 8 cut(s) 70, 441, 530, 862, 1096, 1201, 1216, 1270
BstMAI GTCTC 1 cut(s) 894
BstMBI GATC 8 cut(s) 67, 438, 527, 859, 1093, 1198, 1213, 1267
BstMWI GCNNNNNNNGC 3 cut(s) 37, 90, 1365
BstNI CCWGG 1 cut(s) 393
BstSCI CCNGG 2 cut(s) 323, 391
BstSFI CTRYAG 2 cut(s) 1141, 1419
BstV1I GCAGC 6 cut(s) 93, 96, 199, 289, 332, 932
BstV2I GAAGAC 2 cut(s) 795, 1281
BstX2I RGATCY 2 cut(s) 1093, 1267
BstYI RGATCY 2 cut(s) 1093, 1267
BsuRI GGCC 3 cut(s) 31, 552, 677
BtgI CCRYGG 1 cut(s) 216
BtsCI GGATG 3 cut(s) 978, 1047, 1243
BtsIMutI CAGTG 3 cut(s) 453, 1138, 1416
BveI ACCTGC 1 cut(s) 623
Cac8I GCNNGC 3 cut(s) 33, 797, 912
CaiI CAGNNNCTG 2 cut(s) 90, 903
CciI TCATGA 1 cut(s) 441
CfoI GCGC 1 cut(s) 910
Cfr10I RCCGGY 1 cut(s) 246
Cfr13I GGNCC 4 cut(s) 58, 244, 599, 1000
CseI GACGC 2 cut(s) 149, 1244
CsiI ACCWGGT 1 cut(s) 391
Csp6I GTAC 5 cut(s) 133, 198, 1087, 1102, 1337
CspAI ACCGGT 1 cut(s) 246
CspCI CAANNNNNGTGG 2 cut(s) 708, 743
CviAII CATG 6 cut(s) 442, 475, 638, 873, 1090, 1105
CviQI GTAC 5 cut(s) 133, 198, 1087, 1102, 1337
DdeI CTNAG 6 cut(s) 372, 523, 573, 851, 896, 990
DpnI GATC 8 cut(s) 69, 440, 529, 861, 1095, 1200, 1215, 1269
DpnII GATC 8 cut(s) 67, 438, 527, 859, 1093, 1198, 1213, 1267
EaeI YGGCCR 1 cut(s) 675
Eam1104I CTCTTC 1 cut(s) 1386
EarI CTCTTC 1 cut(s) 1386
Eco130I CCWWGG 2 cut(s) 567, 616
Eco47I GGWCC 4 cut(s) 58, 244, 599, 1000
Eco88I CYCGRG 1 cut(s) 1262
EcoRII CCWGG 1 cut(s) 391
EcoT14I CCWWGG 2 cut(s) 567, 616
ErhI CCWWGG 2 cut(s) 567, 616
FaeI CATG 6 cut(s) 445, 478, 641, 876, 1093, 1108
FalI AAGNNNNNCTT 6 cut(s) 417, 449, 639, 671, 1295, 1327
FaqI GGGAC 1 cut(s) 3
FatI CATG 6 cut(s) 441, 474, 637, 872, 1089, 1104
Fnu4HI GCNGC 6 cut(s) 82, 85, 213, 303, 321, 946
FokI GGATG 3 cut(s) 965, 1054, 1250
Fsp4HI GCNGC 6 cut(s) 82, 85, 213, 303, 321, 946
FspBI CTAG 3 cut(s) 461, 660, 741
GlaI GCGC 1 cut(s) 909
GluI GCNGC 6 cut(s) 82, 85, 213, 303, 321, 946
HaeIII GGCC 3 cut(s) 31, 552, 677
HapII CCGG 2 cut(s) 247, 324
HgaI GACGC 2 cut(s) 149, 1244
HhaI GCGC 1 cut(s) 910
Hin1II CATG 6 cut(s) 445, 478, 641, 876, 1093, 1108
Hin6I GCGC 1 cut(s) 908
HinP1I GCGC 1 cut(s) 908
HincII GTYRAC 2 cut(s) 1300, 1378
HindII GTYRAC 2 cut(s) 1300, 1378
HinfI GANTC 8 cut(s) 284, 517, 561, 710, 832, 892, 1316, 1321
HpaII CCGG 2 cut(s) 247, 324
Hpy166II GTNNAC 5 cut(s) 103, 955, 1259, 1300, 1378
Hpy188I TCNGA 4 cut(s) 258, 709, 899, 1015
Hpy188III TCNNGA 5 cut(s) 442, 525, 1097, 1202, 1271
Hpy8I GTNNAC 5 cut(s) 103, 955, 1259, 1300, 1378
HpyAV CCTTC 3 cut(s) 121, 876, 1228
HpyCH4III ACNGT 3 cut(s) 905, 1375, 1420
HpyCH4IV ACGT 2 cut(s) 489, 542
HpyCH4V TGCA 5 cut(s) 320, 632, 948, 1165, 1334
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 90, 1365
HpyF3I CTNAG 6 cut(s) 372, 523, 573, 851, 896, 990
HpySE526I ACGT 2 cut(s) 489, 542
Hsp92II CATG 6 cut(s) 445, 478, 641, 876, 1093, 1108
HspAI GCGC 1 cut(s) 908
Kzo9I GATC 8 cut(s) 67, 438, 527, 859, 1093, 1198, 1213, 1267
LmnI GCTCC 2 cut(s) 98, 212
Lsp1109I GCAGC 6 cut(s) 93, 96, 199, 289, 332, 932
LweI GCATC 2 cut(s) 178, 1195
MabI ACCWGGT 1 cut(s) 391
MaeI CTAG 3 cut(s) 461, 660, 741
MaeII ACGT 2 cut(s) 489, 542
MaeIII GTNAC 4 cut(s) 395, 490, 698, 1156
MalI GATC 8 cut(s) 69, 440, 529, 861, 1095, 1200, 1215, 1269
MboI GATC 8 cut(s) 67, 438, 527, 859, 1093, 1198, 1213, 1267
MflI RGATCY 2 cut(s) 1093, 1267
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 4 cut(s) 161, 592, 1118, 1329
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 6 cut(s) 617, 779, 912, 1039, 1067, 1258
MseI TTAA 7 cut(s) 63, 117, 228, 681, 888, 966, 1121
MspA1I CMGCKG 1 cut(s) 212
MspCI CTTAAG 1 cut(s) 227
MspI CCGG 2 cut(s) 247, 324
MspR9I CCNGG 2 cut(s) 325, 393
Mva1269I GAATGC 2 cut(s) 343, 589
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 3 cut(s) 37, 90, 1365
NciI CCSGG 1 cut(s) 325
NdeII GATC 8 cut(s) 67, 438, 527, 859, 1093, 1198, 1213, 1267
NlaIII CATG 6 cut(s) 445, 478, 641, 876, 1093, 1108
NlaIV GGNNCC 2 cut(s) 1002, 1095
NspV TTCGAA 2 cut(s) 335, 387
PagI TCATGA 1 cut(s) 441
PcsI WCGNNNNNNNCGW 3 cut(s) 384, 539, 792
PctI GAATGC 2 cut(s) 343, 589
PfeI GAWTC 8 cut(s) 284, 517, 561, 710, 832, 892, 1316, 1321
PflFI GACNNNGTC 1 cut(s) 1382
PflMI CCANNNNNTGG 1 cut(s) 27
PinAI ACCGGT 1 cut(s) 246
PkrI GCNGC 6 cut(s) 83, 86, 214, 304, 322, 947
Ppu21I YACGTR 2 cut(s) 490, 543
PsiI TTATAA 1 cut(s) 645
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 2 cut(s) 1002, 1095
PspPI GGNCC 4 cut(s) 58, 244, 599, 1000
PstNI CAGNNNCTG 2 cut(s) 90, 903
PsuI RGATCY 2 cut(s) 1093, 1267
PsyI GACNNNGTC 1 cut(s) 1382
RsaI GTAC 5 cut(s) 134, 199, 1088, 1103, 1338
RsaNI GTAC 5 cut(s) 133, 198, 1087, 1102, 1337
SaqAI TTAA 7 cut(s) 63, 117, 228, 681, 888, 966, 1121
SatI GCNGC 6 cut(s) 82, 85, 213, 303, 321, 946
Sau3AI GATC 8 cut(s) 67, 438, 527, 859, 1093, 1198, 1213, 1267
Sau96I GGNCC 4 cut(s) 58, 244, 599, 1000
ScaI AGTACT 1 cut(s) 1338
ScrFI CCNGG 2 cut(s) 325, 393
SduI GDGCHC 1 cut(s) 8
SexAI ACCWGGT 1 cut(s) 391
SfaNI GCATC 2 cut(s) 178, 1195
SfcI CTRYAG 2 cut(s) 1141, 1419
SfuI TTCGAA 2 cut(s) 335, 387
SinI GGWCC 4 cut(s) 58, 244, 599, 1000
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SpeI ACTAGT 1 cut(s) 460
Sse9I AATT 4 cut(s) 161, 592, 1118, 1329
SsiI CCGC 5 cut(s) 56, 210, 294, 305, 663
SspI AATATT 2 cut(s) 413, 818
SspMI CTAG 3 cut(s) 461, 660, 741
StyD4I CCNGG 2 cut(s) 323, 391
StyI CCWWGG 2 cut(s) 567, 616
TaaI ACNGT 3 cut(s) 905, 1375, 1420
TaiI ACGT 2 cut(s) 492, 545
TaqI TCGA 8 cut(s) 287, 335, 378, 387, 437, 748, 786, 1319
TasI AATT 4 cut(s) 161, 592, 1118, 1329
TatI WGTACW 2 cut(s) 1101, 1336
TfiI GAWTC 8 cut(s) 284, 517, 561, 710, 832, 892, 1316, 1321
Tru1I TTAA 7 cut(s) 63, 117, 228, 681, 888, 966, 1121
Tru9I TTAA 7 cut(s) 63, 117, 228, 681, 888, 966, 1121
TscAI CASTG 3 cut(s) 460, 1138, 1423
TseI GCWGC 6 cut(s) 81, 84, 212, 302, 320, 945
TspDTI ATGAA 2 cut(s) 171, 828
TspGWI ACGGA 2 cut(s) 304, 612
TspRI CASTG 3 cut(s) 460, 1138, 1423
Tth111I GACNNNGTC 1 cut(s) 1382
Van91I CCANNNNNTGG 1 cut(s) 27
Vha464I CTTAAG 1 cut(s) 227
VpaK11BI GGWCC 4 cut(s) 58, 244, 599, 1000
XcmI CCANNNNNNNNNTGG 2 cut(s) 103, 938
XspI CTAG 3 cut(s) 461, 660, 741
ZrmI AGTACT 1 cut(s) 1338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.