FvH4_6g02360

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011499
Physical Location & Seq
Reverse (-)
1360990 .. 1365787
4798 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02360.t2

Sequence Viewer

Length: 1140 bp
ATGGAACCAAACGAACACCAACTCAGCTCCTACTTCCACCCCGCCAACACCGCCGCCGCCCTGTCTTCGCCGACCAATGGCCTCGTCGGCGGCGGACCAAACACCCAACACCACCAACAACAACAACAACAACACCAACAACACCAACAGCTCTCCTCGGCCGACAACAACAACAACACCAACACCAACATGGTCTTCACTCACTCCTCCGCGGTCCCTCCCCCGCCCACGTCAGCCGTGACGTCACCTGTCGAGCCGGCGAAGAGGAAGCGCGGCCGGCCGAGAAAGTACGGCACGCCGGAGCAGGCCTTGGCGGCGAAGAAGGCCGCCACGACGTCGTCTCACTCCTCCTCTAAGGTGAAGAAGGAGCAGCAGCAGCAGCAGCAGCAACACGGCGGCGGAGGCTCAGCGTCGCCGTCGTATTCCGGGCCCACCAAGAAATCTCAGCAGCTCTCAGCTATTGGCAATTCAGGGCAAGGTTTTACACCTCATGTTATAAACTTGGTTGCAGGAGAGGATGTGGGCGACAAAATCATGGCTTTTATGCGACAGAGTAAGCGTGACATTTGCATTCTGTCCGCTTCTGGGTCGATCTCAAATGCATCTATTCGTCAGCCAGCTACCTCAGGAGGAAATATTACATATGAGGGTCACTTTGAAATCATTTCACTGTCGGGATCATATGTACATACTCCTGGGGGAAAGACTGGTGGGATGAGTGTGTGTCTATCTAATACAAATGGCCACATTTTTGGGGGTGGAGTTGGTGGACCATTGACTGCTGCAGGCCCTGTTCAGGTTATTATTGGTACTTTTCTGATTGATAACAAAAACGATGTCAATACTGGTGTAAAAATGGAGGTGTCTATCCCCAGGCTGCCATCACCTGTTGGTGGTACATCTATGATGAATGTAGGTTTCCGCTCAGCAGTGAACTCTTCTGGAAGAAATATGGTCAGGGCAAATGATGAGCAACAGCAAGCTATTGGAGGAAGTCATTTCATGACTCAGGGCATGCATGGATCCGCCGATTGGAGGGCTGGTCCAGATGTCAGAAGCACTGGTGCTTATGAATTGGCAGGTGGTCATGCAGCCCACCAATCTCCGGAAAATGGGGACTACGATCAAATTCCAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

380

Amino Acids

39.63

Weight (kDa)

9.0

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 162 - 272 1.6e-23 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04590 AT3G04590
fragaria_vesca FvH4_6g02360 FvH4_6g02360
malus_domestica MD00G1114400.v1.1 MD12G1245000.v1.1
prunus_persica Prupe.6G347600_v2.0.a1 Prupe.6G347600_v2.0.a1
pyrus_communis pycom04g20220 pycom12g22470
rosa_chinensis RchiOBHm_Chr3g0450121
rosa_laevigata RLG00000025754
rosa_multiflora Rmu_ssc0000116.1_g000066
rosa_roxburghii Rroxscaffold_6G00427890
rosa_rugosa Rorug02G0625700
rosa_samantha Rh3AG024900 Rh3BG025500 Rh3CG024400 Rh3DG025500
rosa_wichuraiana Rw3G001990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 497
AarI CACCTGC 1 cut(s) 1070
AatII GACGTC 2 cut(s) 245, 338
Acc36I ACCTGC 1 cut(s) 1070
AccBSI CCGCTC 1 cut(s) 924
AccII CGCG 2 cut(s) 212, 273
AccIII TCCGGA 1 cut(s) 1105
AclWI GGATC 3 cut(s) 685, 1017, 1030
AcoI YGGCCR 4 cut(s) 159, 274, 278, 742
AcsI RAATTY 1 cut(s) 1128
AcyI GRCGYC 2 cut(s) 242, 335
AfaI GTAC 4 cut(s) 290, 687, 811, 898
AfiI CCNNNNNNNGG 8 cut(s) 77, 585, 796, 893, 1032, 1035, 1105, 1112
AgsI TTSAA 1 cut(s) 659
AjiI CACGTC 1 cut(s) 231
AjnI CCWGG 2 cut(s) 694, 872
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 6 cut(s) 27, 151, 451, 458, 620, 983
AluI AGCT 6 cut(s) 27, 151, 451, 458, 620, 983
Alw26I GTCTC 1 cut(s) 345
AlwI GGATC 3 cut(s) 685, 1017, 1030
AlwNI CAGNNNCTG 1 cut(s) 791
Aor13HI TCCGGA 1 cut(s) 1105
AoxI GGCC 9 cut(s) 79, 159, 274, 278, 306, 324, 428, 742, 787
ApaI GGGCCC 1 cut(s) 432
ApoI RAATTY 1 cut(s) 1128
ArsI GACNNNNNNTTYG 2 cut(s) 822, 854
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 7 cut(s) 95, 214, 428, 429, 770, 788, 1043
AsuC2I CCSGG 1 cut(s) 427
AsuHPI GGTGA 3 cut(s) 237, 370, 876
AvaII GGWCC 4 cut(s) 95, 214, 770, 1043
AxyI CCTNAGG 1 cut(s) 625
BaeGI GKGCMC 1 cut(s) 432
BalI TGGCCA 1 cut(s) 744
BamHI GGATCC 1 cut(s) 1022
BanII GRGCYC 1 cut(s) 432
BbsI GAAGAC 2 cut(s) 57, 187
BccI CCATC 1 cut(s) 889
BceAI ACGGC 4 cut(s) 221, 307, 400, 409
BciT130I CCWGG 2 cut(s) 696, 874
BcnI CCSGG 1 cut(s) 427
BcoDI GTCTC 1 cut(s) 345
BfmI CTRYAG 1 cut(s) 783
BfuAI ACCTGC 1 cut(s) 1070
BglI GCCNNNNNGGC 2 cut(s) 87, 314
BlpI GCTNAGC 2 cut(s) 406, 925
Bme1390I CCNGG 3 cut(s) 427, 696, 874
Bme18I GGWCC 4 cut(s) 95, 214, 770, 1043
BmgBI CACGTC 1 cut(s) 231
BmgT120I GGNCC 7 cut(s) 95, 214, 428, 429, 770, 788, 1043
BmiI GGNNCC 4 cut(s) 6, 216, 430, 1024
BmrFI CCNGG 3 cut(s) 427, 696, 874
BmsI GCATC 1 cut(s) 611
BpiI GAAGAC 2 cut(s) 57, 187
Bpu1102I GCTNAGC 2 cut(s) 406, 925
BpuMI CCSGG 1 cut(s) 427
BsaHI GRCGYC 2 cut(s) 242, 335
BsaJI CCNNGG 5 cut(s) 156, 210, 309, 695, 872
BsaWI WCCGGW 1 cut(s) 1105
BsaXI ACNNNNNCTCC 4 cut(s) 504, 534, 1027, 1057
Bsc4I CCNNNNNNNGG 8 cut(s) 77, 585, 796, 893, 1032, 1035, 1105, 1112
Bse118I RCCGGY 2 cut(s) 256, 276
Bse1I ACTGG 3 cut(s) 712, 850, 1066
Bse21I CCTNAGG 1 cut(s) 625
BseAI TCCGGA 1 cut(s) 1105
BseBI CCWGG 2 cut(s) 696, 874
BseDI CCNNGG 5 cut(s) 156, 210, 309, 695, 872
BseGI GGATG 2 cut(s) 523, 720
BseLI CCNNNNNNNGG 8 cut(s) 77, 585, 796, 893, 1032, 1035, 1105, 1112
BseMII CTCAG 7 cut(s) 37, 420, 458, 468, 639, 939, 1022
BseNI ACTGG 3 cut(s) 712, 850, 1066
BseRI GAGGAG 4 cut(s) 145, 196, 337, 340
BseSI GKGCMC 1 cut(s) 432
BseX3I CGGCCG 3 cut(s) 159, 274, 278
Bsh1236I CGCG 2 cut(s) 212, 273
Bsh1285I CGRYCG 3 cut(s) 162, 277, 281
BshFI GGCC 9 cut(s) 81, 161, 276, 280, 308, 326, 430, 744, 789
BsiEI CGRYCG 3 cut(s) 162, 277, 281
BsiSI CCGG 5 cut(s) 257, 277, 299, 426, 1106
BslFI GGGAC 2 cut(s) 200, 1130
BslI CCNNNNNNNGG 8 cut(s) 77, 585, 796, 893, 1032, 1035, 1105, 1112
BsmAI GTCTC 1 cut(s) 345
BsmBI CGTCTC 1 cut(s) 345
BsmFI GGGAC 2 cut(s) 200, 1130
BsmI GAATGC 1 cut(s) 570
BsnI GGCC 9 cut(s) 81, 161, 276, 280, 308, 326, 430, 744, 789
Bsp120I GGGCCC 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 432
Bsp13I TCCGGA 1 cut(s) 1105
Bsp1407I TGTACA 1 cut(s) 685
Bsp143I GATC 4 cut(s) 591, 677, 1022, 1123
Bsp1720I GCTNAGC 2 cut(s) 406, 925
BspANI GGCC 9 cut(s) 81, 161, 276, 280, 308, 326, 430, 744, 789
BspCNI CTCAG 7 cut(s) 36, 419, 457, 467, 638, 938, 1021
BspEI TCCGGA 1 cut(s) 1105
BspFNI CGCG 2 cut(s) 212, 273
BspHI TCATGA 1 cut(s) 1002
BspLI GGNNCC 4 cut(s) 6, 216, 430, 1024
BspMAI CTGCAG 1 cut(s) 787
BspMI ACCTGC 1 cut(s) 1070
BspPI GGATC 3 cut(s) 685, 1017, 1030
BsrBI CCGCTC 1 cut(s) 924
BsrFI RCCGGY 2 cut(s) 256, 276
BsrGI TGTACA 1 cut(s) 685
BsrI ACTGG 3 cut(s) 712, 850, 1066
BssAI RCCGGY 2 cut(s) 256, 276
BssECI CCNNGG 5 cut(s) 156, 210, 309, 695, 872
BssMI GATC 4 cut(s) 591, 677, 1022, 1123
BssNI GRCGYC 2 cut(s) 242, 335
BssT1I CCWWGG 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 696, 874
Bst4CI ACNGT 1 cut(s) 672
Bst6I CTCTTC 2 cut(s) 257, 943
BstACI GRCGYC 2 cut(s) 242, 335
BstAUI TGTACA 1 cut(s) 685
BstC8I GCNNGC 8 cut(s) 258, 278, 296, 306, 618, 787, 981, 1016
BstDEI CTNAG 8 cut(s) 23, 354, 406, 444, 454, 625, 925, 1008
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 523, 720
BstFNI CGCG 2 cut(s) 212, 273
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 4 cut(s) 594, 680, 1025, 1126
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 4 cut(s) 591, 677, 1022, 1123
BstMCI CGRYCG 3 cut(s) 162, 277, 281
BstNI CCWGG 2 cut(s) 696, 874
BstNSI RCATGY 1 cut(s) 1018
BstSCI CCNGG 3 cut(s) 425, 694, 872
BstSFI CTRYAG 1 cut(s) 783
BstSLI GKGCMC 1 cut(s) 432
BstUI CGCG 2 cut(s) 212, 273
BstV2I GAAGAC 2 cut(s) 57, 187
BstX2I RGATCY 1 cut(s) 1022
BstXI CCANNNNNNTGG 1 cut(s) 752
BstYI RGATCY 1 cut(s) 1022
BstZI CGGCCG 3 cut(s) 159, 274, 278
Bsu36I CCTNAGG 1 cut(s) 625
BsuRI GGCC 9 cut(s) 81, 161, 276, 280, 308, 326, 430, 744, 789
BtgI CCRYGG 1 cut(s) 210
BtrI CACGTC 1 cut(s) 231
BtsCI GGATG 2 cut(s) 523, 720
BtsI GCAGTG 1 cut(s) 936
BtsIMutI CAGTG 3 cut(s) 668, 936, 1059
BveI ACCTGC 1 cut(s) 1070
Cac8I GCNNGC 8 cut(s) 258, 278, 296, 306, 618, 787, 981, 1016
CaiI CAGNNNCTG 1 cut(s) 791
CciI TCATGA 1 cut(s) 1002
CfoI GCGC 1 cut(s) 273
Cfr10I RCCGGY 2 cut(s) 256, 276
Cfr13I GGNCC 7 cut(s) 95, 214, 428, 429, 770, 788, 1043
Cfr42I CCGCGG 1 cut(s) 213
CseI GACGC 1 cut(s) 399
Csp6I GTAC 4 cut(s) 289, 686, 810, 897
CviAII CATG 7 cut(s) 190, 491, 535, 1003, 1015, 1019, 1088
CviQI GTAC 4 cut(s) 289, 686, 810, 897
DdeI CTNAG 8 cut(s) 23, 354, 406, 444, 454, 625, 925, 1008
DpnI GATC 4 cut(s) 593, 679, 1024, 1125
DpnII GATC 4 cut(s) 591, 677, 1022, 1123
EaeI YGGCCR 4 cut(s) 159, 274, 278, 742
EagI CGGCCG 3 cut(s) 159, 274, 278
Eam1104I CTCTTC 2 cut(s) 257, 943
EarI CTCTTC 2 cut(s) 257, 943
EciI GGCGGA 3 cut(s) 108, 414, 1015
EclXI CGGCCG 3 cut(s) 159, 274, 278
Eco130I CCWWGG 1 cut(s) 309
Eco147I AGGCCT 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 432
Eco47I GGWCC 4 cut(s) 95, 214, 770, 1043
Eco52I CGGCCG 3 cut(s) 159, 274, 278
Eco81I CCTNAGG 1 cut(s) 625
EcoO109I RGGNCCY 1 cut(s) 788
EcoRII CCWGG 2 cut(s) 694, 872
EcoT14I CCWWGG 1 cut(s) 309
EcoT22I ATGCAT 2 cut(s) 604, 1020
EcoT38I GRGCYC 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 309
Esp3I CGTCTC 1 cut(s) 345
FaeI CATG 7 cut(s) 193, 494, 538, 1006, 1018, 1022, 1091
FaqI GGGAC 2 cut(s) 200, 1130
FatI CATG 7 cut(s) 189, 490, 534, 1002, 1014, 1018, 1087
FauI CCCGC 2 cut(s) 49, 231
FauNDI CATATG 2 cut(s) 643, 682
FokI GGATG 2 cut(s) 530, 727
FriOI GRGCYC 1 cut(s) 432
FseI GGCCGGCC 1 cut(s) 280
GlaI GCGC 1 cut(s) 272
HaeIII GGCC 9 cut(s) 81, 161, 276, 280, 308, 326, 430, 744, 789
HapII CCGG 5 cut(s) 257, 277, 299, 426, 1106
HgaI GACGC 1 cut(s) 399
HhaI GCGC 1 cut(s) 273
Hin1I GRCGYC 2 cut(s) 242, 335
Hin1II CATG 7 cut(s) 193, 494, 538, 1006, 1018, 1022, 1091
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HinfI GANTC 1 cut(s) 1006
HpaII CCGG 5 cut(s) 257, 277, 299, 426, 1106
HphI GGTGA 3 cut(s) 237, 370, 876
Hpy166II GTNNAC 2 cut(s) 770, 934
Hpy188I TCNGA 2 cut(s) 819, 1055
Hpy188III TCNNGA 7 cut(s) 627, 675, 942, 1003, 1046, 1106, 1133
Hpy8I GTNNAC 2 cut(s) 770, 934
Hpy99I CGWCG 5 cut(s) 89, 337, 340, 415, 421
HpyAV CCTTC 2 cut(s) 316, 358
HpyCH4III ACNGT 1 cut(s) 672
HpyCH4IV ACGT 3 cut(s) 230, 242, 335
HpyCH4V TGCA 6 cut(s) 509, 570, 602, 785, 1018, 1091
HpyF3I CTNAG 8 cut(s) 23, 354, 406, 444, 454, 625, 925, 1008
HpySE526I ACGT 3 cut(s) 230, 242, 335
Hsp92I GRCGYC 2 cut(s) 242, 335
Hsp92II CATG 7 cut(s) 193, 494, 538, 1006, 1018, 1022, 1091
HspAI GCGC 1 cut(s) 271
Kpn2I TCCGGA 1 cut(s) 1105
KroI GCCGGC 2 cut(s) 256, 276
KroNI GCCGGC 2 cut(s) 258, 278
KspI CCGCGG 1 cut(s) 213
Kzo9I GATC 4 cut(s) 591, 677, 1022, 1123
LmnI GCTCC 3 cut(s) 32, 301, 367
LweI GCATC 1 cut(s) 611
MaeII ACGT 3 cut(s) 230, 242, 335
MaeIII GTNAC 4 cut(s) 238, 243, 560, 650
MalI GATC 4 cut(s) 593, 679, 1024, 1125
MbiI CCGCTC 1 cut(s) 924
MboI GATC 4 cut(s) 591, 677, 1022, 1123
MboII GAAGA 7 cut(s) 57, 187, 274, 331, 373, 930, 957
MflI RGATCY 1 cut(s) 1022
MhlI GDGCHC 1 cut(s) 432
MlsI TGGCCA 1 cut(s) 744
MluCI AATT 3 cut(s) 466, 1073, 1128
MluNI TGGCCA 1 cut(s) 744
MlyI GAGTC 1 cut(s) 1000
Mox20I TGGCCA 1 cut(s) 744
Mph1103I ATGCAT 2 cut(s) 604, 1020
MroI TCCGGA 1 cut(s) 1105
MroNI GCCGGC 2 cut(s) 256, 276
MscI TGGCCA 1 cut(s) 744
MslI CAYNNNNRTG 1 cut(s) 188
Msp20I TGGCCA 1 cut(s) 744
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 5 cut(s) 257, 277, 299, 426, 1106
MspR9I CCNGG 3 cut(s) 427, 696, 874
Mva1269I GAATGC 1 cut(s) 570
MvaI CCWGG 2 cut(s) 696, 874
MvnI CGCG 2 cut(s) 212, 273
NaeI GCCGGC 2 cut(s) 258, 278
NciI CCSGG 1 cut(s) 427
NdeI CATATG 2 cut(s) 643, 682
NdeII GATC 4 cut(s) 591, 677, 1022, 1123
NgoMIV GCCGGC 2 cut(s) 256, 276
NlaIII CATG 7 cut(s) 193, 494, 538, 1006, 1018, 1022, 1091
NlaIV GGNNCC 4 cut(s) 6, 216, 430, 1024
NmeAIII GCCGAG 2 cut(s) 137, 306
NmuCI GTSAC 4 cut(s) 238, 243, 560, 650
NsiI ATGCAT 2 cut(s) 604, 1020
NspI RCATGY 1 cut(s) 1018
PaeI GCATGC 1 cut(s) 1018
PagI TCATGA 1 cut(s) 1002
PaqCI CACCTGC 1 cut(s) 1070
PceI AGGCCT 1 cut(s) 308
PctI GAATGC 1 cut(s) 570
PdiI GCCGGC 2 cut(s) 258, 278
PflFI GACNNNGTC 1 cut(s) 337
PleI GAGTC 1 cut(s) 1000
PpsI GAGTC 1 cut(s) 1000
PsiI TTATAA 1 cut(s) 497
Psp6I CCWGG 2 cut(s) 694, 872
PspGI CCWGG 2 cut(s) 694, 872
PspN4I GGNNCC 4 cut(s) 6, 216, 430, 1024
PspOMI GGGCCC 1 cut(s) 428
PspPI GGNCC 7 cut(s) 95, 214, 428, 429, 770, 788, 1043
PstI CTGCAG 1 cut(s) 787
PstNI CAGNNNCTG 1 cut(s) 791
PsuI RGATCY 1 cut(s) 1022
PsyI GACNNNGTC 1 cut(s) 337
RigI GGCCGGCC 1 cut(s) 280
RsaI GTAC 4 cut(s) 290, 687, 811, 898
RsaNI GTAC 4 cut(s) 289, 686, 810, 897
RseI CAYNNNNRTG 1 cut(s) 188
SacII CCGCGG 1 cut(s) 213
Sau3AI GATC 4 cut(s) 591, 677, 1022, 1123
Sau96I GGNCC 7 cut(s) 95, 214, 428, 429, 770, 788, 1043
SchI GAGTC 1 cut(s) 1000
ScrFI CCNGG 3 cut(s) 427, 696, 874
SduI GDGCHC 1 cut(s) 432
SfaNI GCATC 1 cut(s) 611
SfcI CTRYAG 1 cut(s) 783
Sfr303I CCGCGG 1 cut(s) 213
SgrBI CCGCGG 1 cut(s) 213
SinI GGWCC 4 cut(s) 95, 214, 770, 1043
SmiMI CAYNNNNRTG 1 cut(s) 188
SphI GCATGC 1 cut(s) 1018
Sse9I AATT 3 cut(s) 466, 1073, 1128
SseBI AGGCCT 1 cut(s) 308
SspI AATATT 1 cut(s) 637
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 3 cut(s) 425, 694, 872
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 1 cut(s) 672
TaiI ACGT 3 cut(s) 233, 245, 338
TaqI TCGA 2 cut(s) 252, 590
TasI AATT 3 cut(s) 466, 1073, 1128
TatI WGTACW 1 cut(s) 685
TauI GCSGC 7 cut(s) 56, 59, 93, 276, 317, 329, 399
TscAI CASTG 3 cut(s) 675, 936, 1066
TseFI GTSAC 4 cut(s) 238, 243, 560, 650
Tsp45I GTSAC 4 cut(s) 238, 243, 560, 650
TspDTI ATGAA 3 cut(s) 923, 991, 1086
TspRI CASTG 3 cut(s) 675, 936, 1066
Tth111I GACNNNGTC 1 cut(s) 337
VpaK11BI GGWCC 4 cut(s) 95, 214, 770, 1043
XapI RAATTY 1 cut(s) 1128
XceI RCATGY 1 cut(s) 1018
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
ZraI GACGTC 2 cut(s) 243, 336
Zsp2I ATGCAT 2 cut(s) 604, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.