RchiOBHm_Chr3g0450121

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0011499
Physical Location & Seq
Reverse (-)
1750271 .. 1756507
6237 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41746

Sequence Viewer

Length: 1089 bp
ATGGAACCAAACGAACACCAACTCAGCTCCTACTTCAACCCCACCACCACCGCCGCCGCCTTGTCTCCGACCAATGGCCTCGCCGGCGGCCCAAACACCCAACAACAACTCTCCTCGGCCGACAACAACAACAACATGGTCTACACTCCTCACTCCTCCTCCGCCGCCGCCGTGCCTCCGCCCTCGTCAGCCTTGACGTCACCGCTGGAGCCGGCGAAGAGGAAGCGCGGGAGGCCCAGGAAGTACGGCACGCCGGAGCAGGCCCTGGCGGCCAAGAAGGCCGCGACGACGTCGTCTCACTCCTCGTCTTCTAAGGAGAAGAAGGAGCAGCAGCTCCACCAGCAGCAGCAGCAGCAACACGGCGGCGGCTCAGCCTCGCCGTCTTATTCTGGGTCCACCAAGAAATCTCAGCTCTCTGCTCTTGGCAATTCAGGGCAAGGTTTTACACCACATGTTCTAACTGTGGCTCCAGGAGAGGATGTGGGCCAGAAAATCATGGTTTTTATGCAACAGAATAAGCGTGACATATGCATTCTGTCTGCTTCTGGTTCAATCTCAAACGCATCTATTCGCCAGCCAGCTACTTCAGGAGGCAACATTACATATGAGGGTCGCTTTGAGATCATTTCACTGTCTGGATCTTATGTAACTGACCAAGGGGGAAAGACTGGTGGGCTCAGTGTGTGTCTCTCCAATACAAATGGGCAAATCATTGGGGGTGGAGTTGGTGGACCACTGAAGGCTGCAGGCCCTGTTCAGGTTATTGTTGGTACTTTTCTGATTGATAACAAAAAGGAAAAAGTCGAGGTTTCTATGCCCAGGATGCCATCGCCAGGTGGTGGAGCATCTATGATGAATGTAGGTTTCCGCTCAACGGTGGACTCTTCTGGAAGAAATATGGTCAGGGCAAATGATGAACAGCAAGCTATTGGCGGAAGTCATTTCATGATTCAGGGCATGCATGGGTCCACAGATTGGAGGACTGGTCCAGATGCCAGAAGCACTGGTGCTTATGAATTGGCAGGAAGAGGTGGTCGTGCAGCCCACCAATCTCCAGAAAATGGGGACTATGATCAAATTCCAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

362

Amino Acids

37.67

Weight (kDa)

9.24

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 149 - 259 1.1e-24 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04590 AT3G04590
fragaria_vesca FvH4_6g02360 FvH4_6g02360
malus_domestica MD00G1114400.v1.1 MD12G1245000.v1.1
prunus_persica Prupe.6G347600_v2.0.a1 Prupe.6G347600_v2.0.a1
pyrus_communis pycom04g20220 pycom12g22470
rosa_chinensis RchiOBHm_Chr3g0450121
rosa_laevigata RLG00000025754
rosa_multiflora Rmu_ssc0000116.1_g000066
rosa_roxburghii Rroxscaffold_6G00427890
rosa_rugosa Rorug02G0625700
rosa_samantha Rh3AG024900 Rh3BG025500 Rh3CG024400 Rh3DG025500
rosa_wichuraiana Rw3G001990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 292
AatII GACGTC 2 cut(s) 200, 293
AccB7I CCANNNNNTGG 3 cut(s) 839, 975, 1061
AccBSI CCGCTC 1 cut(s) 870
AccI GTMKAC 1 cut(s) 141
AccII CGCG 2 cut(s) 228, 284
AclWI GGATC 1 cut(s) 646
AcoI YGGCCR 2 cut(s) 117, 270
AcsI RAATTY 1 cut(s) 1077
AcuI CTGAAG 2 cut(s) 570, 758
AcyI GRCGYC 2 cut(s) 197, 290
AfaI GTAC 2 cut(s) 245, 772
AfiI CCNNNNNNNGG 7 cut(s) 74, 757, 833, 839, 874, 975, 1061
AflIII ACRYGT 1 cut(s) 451
AgsI TTSAA 2 cut(s) 37, 552
AjnI CCWGG 5 cut(s) 236, 264, 469, 818, 832
AluBI AGCT 5 cut(s) 27, 334, 412, 581, 926
AluI AGCT 5 cut(s) 27, 334, 412, 581, 926
Alw26I GTCTC 3 cut(s) 69, 300, 692
AlwI GGATC 1 cut(s) 646
AlwNI CAGNNNCTG 2 cut(s) 265, 752
AoxI GGCC 9 cut(s) 76, 88, 117, 233, 261, 270, 279, 484, 748
ApeKI GCWGC 8 cut(s) 328, 331, 343, 346, 349, 352, 743, 1040
ApoI RAATTY 1 cut(s) 1077
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 9 cut(s) 89, 234, 262, 393, 484, 731, 749, 966, 986
AsuHPI GGTGA 1 cut(s) 192
AvaII GGWCC 4 cut(s) 393, 731, 966, 986
BanII GRGCYC 1 cut(s) 678
BbsI GAAGAC 1 cut(s) 300
BbvI GCAGC 8 cut(s) 340, 343, 355, 358, 361, 364, 730, 1052
BccI CCATC 1 cut(s) 835
BceAI ACGGC 4 cut(s) 155, 262, 364, 376
BciT130I CCWGG 5 cut(s) 238, 266, 471, 820, 834
BclI TGATCA 1 cut(s) 1072
BcoDI GTCTC 3 cut(s) 69, 300, 692
BfmI CTRYAG 1 cut(s) 744
BglI GCCNNNNNGGC 3 cut(s) 84, 269, 278
BlpI GCTNAGC 1 cut(s) 370
Bme1390I CCNGG 5 cut(s) 238, 266, 471, 820, 834
Bme18I GGWCC 4 cut(s) 393, 731, 966, 986
BmgT120I GGNCC 9 cut(s) 89, 234, 262, 393, 484, 731, 749, 966, 986
BmiI GGNNCC 5 cut(s) 6, 210, 394, 468, 967
BmrFI CCNGG 5 cut(s) 238, 266, 471, 820, 834
BmsI GCATC 4 cut(s) 572, 813, 854, 982
BpiI GAAGAC 1 cut(s) 300
BpmI CTGGAG 3 cut(s) 227, 453, 1038
Bpu1102I GCTNAGC 1 cut(s) 370
BsaHI GRCGYC 2 cut(s) 197, 290
BsaJI CCNNGG 5 cut(s) 114, 236, 264, 655, 818
BsaXI ACNNNNNCTCC 8 cut(s) 143, 173, 451, 465, 481, 495, 970, 1000
Bsc4I CCNNNNNNNGG 7 cut(s) 74, 757, 833, 839, 874, 975, 1061
Bse118I RCCGGY 2 cut(s) 83, 211
Bse1I ACTGG 3 cut(s) 673, 988, 1009
BseBI CCWGG 5 cut(s) 238, 266, 471, 820, 834
BseDI CCNNGG 5 cut(s) 114, 236, 264, 655, 818
BseGI GGATG 2 cut(s) 484, 828
BseLI CCNNNNNNNGG 7 cut(s) 74, 757, 833, 839, 874, 975, 1061
BseMII CTCAG 4 cut(s) 37, 384, 422, 691
BseNI ACTGG 3 cut(s) 673, 988, 1009
BseRI GAGGAG 5 cut(s) 103, 138, 145, 148, 292
BseX3I CGGCCG 1 cut(s) 117
BseXI GCAGC 8 cut(s) 340, 343, 355, 358, 361, 364, 730, 1052
BsgI GTGCAG 1 cut(s) 1059
Bsh1236I CGCG 2 cut(s) 228, 284
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 9 cut(s) 78, 90, 119, 235, 263, 272, 281, 486, 750
BsiEI CGRYCG 1 cut(s) 120
BsiSI CCGG 3 cut(s) 84, 212, 254
BslFI GGGAC 1 cut(s) 1079
BslI CCNNNNNNNGG 7 cut(s) 74, 757, 833, 839, 874, 975, 1061
BsmAI GTCTC 3 cut(s) 69, 300, 692
BsmBI CGTCTC 1 cut(s) 300
BsmFI GGGAC 1 cut(s) 1079
BsmI GAATGC 1 cut(s) 531
BsnI GGCC 9 cut(s) 78, 90, 119, 235, 263, 272, 281, 486, 750
Bsp1286I GDGCHC 1 cut(s) 678
Bsp143I GATC 3 cut(s) 621, 638, 1072
Bsp1720I GCTNAGC 1 cut(s) 370
BspANI GGCC 9 cut(s) 78, 90, 119, 235, 263, 272, 281, 486, 750
BspCNI CTCAG 4 cut(s) 36, 383, 421, 690
BspFNI CGCG 2 cut(s) 228, 284
BspHI TCATGA 1 cut(s) 945
BspLI GGNNCC 5 cut(s) 6, 210, 394, 468, 967
BspMAI CTGCAG 1 cut(s) 748
BspPI GGATC 1 cut(s) 646
BsrBI CCGCTC 1 cut(s) 870
BsrFI RCCGGY 2 cut(s) 83, 211
BsrI ACTGG 3 cut(s) 673, 988, 1009
BssAI RCCGGY 2 cut(s) 83, 211
BssECI CCNNGG 5 cut(s) 114, 236, 264, 655, 818
BssMI GATC 3 cut(s) 621, 638, 1072
BssNI GRCGYC 2 cut(s) 197, 290
BssT1I CCWWGG 1 cut(s) 655
Bst2UI CCWGG 5 cut(s) 238, 266, 471, 820, 834
Bst4CI ACNGT 3 cut(s) 463, 633, 877
Bst6I CTCTTC 3 cut(s) 212, 889, 1021
BstACI GRCGYC 2 cut(s) 197, 290
BstC8I GCNNGC 9 cut(s) 85, 213, 251, 261, 575, 579, 748, 924, 959
BstDEI CTNAG 5 cut(s) 23, 312, 370, 408, 677
BstF5I GGATG 2 cut(s) 484, 828
BstFNI CGCG 2 cut(s) 228, 284
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 3 cut(s) 624, 641, 1075
BstMAI GTCTC 3 cut(s) 69, 300, 692
BstMBI GATC 3 cut(s) 621, 638, 1072
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 8 cut(s) 84, 232, 269, 278, 340, 349, 352, 823
BstNI CCWGG 5 cut(s) 238, 266, 471, 820, 834
BstNSI RCATGY 2 cut(s) 455, 961
BstSCI CCNGG 5 cut(s) 236, 264, 469, 818, 832
BstSFI CTRYAG 1 cut(s) 744
BstUI CGCG 2 cut(s) 228, 284
BstV1I GCAGC 8 cut(s) 340, 343, 355, 358, 361, 364, 730, 1052
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 638
BstYI RGATCY 1 cut(s) 638
BstZI CGGCCG 1 cut(s) 117
BsuRI GGCC 9 cut(s) 78, 90, 119, 235, 263, 272, 281, 486, 750
BtgZI GCGATG 1 cut(s) 813
BtsCI GGATG 2 cut(s) 484, 828
BtsIMutI CAGTG 4 cut(s) 629, 685, 734, 1002
Cac8I GCNNGC 9 cut(s) 85, 213, 251, 261, 575, 579, 748, 924, 959
CaiI CAGNNNCTG 2 cut(s) 265, 752
CciI TCATGA 1 cut(s) 945
CfoI GCGC 1 cut(s) 228
Cfr10I RCCGGY 2 cut(s) 83, 211
Cfr13I GGNCC 9 cut(s) 89, 234, 262, 393, 484, 731, 749, 966, 986
Csp6I GTAC 2 cut(s) 244, 771
CviAII CATG 6 cut(s) 136, 452, 496, 946, 958, 962
CviQI GTAC 2 cut(s) 244, 771
DdeI CTNAG 5 cut(s) 23, 312, 370, 408, 677
DpnI GATC 3 cut(s) 623, 640, 1074
DpnII GATC 3 cut(s) 621, 638, 1072
DrdI GACNNNNNNGTC 1 cut(s) 292
DseDI GACNNNNNNGTC 1 cut(s) 292
EaeI YGGCCR 2 cut(s) 117, 270
EagI CGGCCG 1 cut(s) 117
Eam1104I CTCTTC 3 cut(s) 212, 889, 1021
EarI CTCTTC 3 cut(s) 212, 889, 1021
EciI GGCGGA 3 cut(s) 151, 168, 948
EclXI CGGCCG 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 655
Eco24I GRGCYC 1 cut(s) 678
Eco47I GGWCC 4 cut(s) 393, 731, 966, 986
Eco52I CGGCCG 1 cut(s) 117
Eco57I CTGAAG 2 cut(s) 570, 758
EcoO109I RGGNCCY 2 cut(s) 262, 749
EcoRII CCWGG 5 cut(s) 236, 264, 469, 818, 832
EcoT14I CCWWGG 1 cut(s) 655
EcoT22I ATGCAT 2 cut(s) 533, 963
EcoT38I GRGCYC 1 cut(s) 678
ErhI CCWWGG 1 cut(s) 655
Esp3I CGTCTC 1 cut(s) 300
FaeI CATG 6 cut(s) 139, 455, 499, 949, 961, 965
FaqI GGGAC 1 cut(s) 1079
FatI CATG 6 cut(s) 135, 451, 495, 945, 957, 961
FauI CCCGC 1 cut(s) 221
FauNDI CATATG 2 cut(s) 527, 604
FbaI TGATCA 1 cut(s) 1072
FblI GTMKAC 1 cut(s) 141
FokI GGATG 2 cut(s) 491, 835
FriOI GRGCYC 1 cut(s) 678
GlaI GCGC 1 cut(s) 227
GsuI CTGGAG 3 cut(s) 227, 453, 1038
HaeIII GGCC 9 cut(s) 78, 90, 119, 235, 263, 272, 281, 486, 750
HapII CCGG 3 cut(s) 84, 212, 254
HhaI GCGC 1 cut(s) 228
Hin1I GRCGYC 2 cut(s) 197, 290
Hin1II CATG 6 cut(s) 139, 455, 499, 949, 961, 965
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 2 cut(s) 881, 949
HpaII CCGG 3 cut(s) 84, 212, 254
HphI GGTGA 1 cut(s) 192
Hpy166II GTNNAC 5 cut(s) 142, 396, 731, 880, 969
Hpy188I TCNGA 2 cut(s) 69, 780
Hpy188III TCNNGA 7 cut(s) 588, 636, 888, 946, 989, 1055, 1082
Hpy8I GTNNAC 5 cut(s) 142, 396, 731, 880, 969
Hpy99I CGWCG 3 cut(s) 289, 292, 295
HpyAV CCTTC 3 cut(s) 271, 316, 733
HpyCH4III ACNGT 3 cut(s) 463, 633, 877
HpyCH4IV ACGT 2 cut(s) 197, 290
HpyCH4V TGCA 5 cut(s) 508, 531, 746, 961, 1040
HpyF10VI GCNNNNNNNGC 8 cut(s) 84, 232, 269, 278, 340, 349, 352, 823
HpyF3I CTNAG 5 cut(s) 23, 312, 370, 408, 677
HpySE526I ACGT 2 cut(s) 197, 290
Hsp92I GRCGYC 2 cut(s) 197, 290
Hsp92II CATG 6 cut(s) 139, 455, 499, 949, 961, 965
HspAI GCGC 1 cut(s) 226
KroI GCCGGC 2 cut(s) 83, 211
KroNI GCCGGC 2 cut(s) 85, 213
Ksp22I TGATCA 1 cut(s) 1072
Kzo9I GATC 3 cut(s) 621, 638, 1072
LmnI GCTCC 7 cut(s) 32, 208, 256, 325, 339, 472, 842
Lsp1109I GCAGC 8 cut(s) 340, 343, 355, 358, 361, 364, 730, 1052
LweI GCATC 4 cut(s) 572, 813, 854, 982
MaeII ACGT 2 cut(s) 197, 290
MaeIII GTNAC 3 cut(s) 198, 521, 646
MalI GATC 3 cut(s) 623, 640, 1074
MbiI CCGCTC 1 cut(s) 870
MboI GATC 3 cut(s) 621, 638, 1072
MboII GAAGA 6 cut(s) 229, 300, 331, 876, 903, 1038
MflI RGATCY 1 cut(s) 638
MhlI GDGCHC 1 cut(s) 678
MluCI AATT 3 cut(s) 427, 1016, 1077
MlyI GAGTC 1 cut(s) 875
MmeI TCCRAC 1 cut(s) 92
Mph1103I ATGCAT 2 cut(s) 533, 963
MreI CGCCGGCG 1 cut(s) 83
MroNI GCCGGC 2 cut(s) 83, 211
MspA1I CMGCKG 1 cut(s) 205
MspI CCGG 3 cut(s) 84, 212, 254
MspR9I CCNGG 5 cut(s) 238, 266, 471, 820, 834
Mva1269I GAATGC 1 cut(s) 531
MvaI CCWGG 5 cut(s) 238, 266, 471, 820, 834
MvnI CGCG 2 cut(s) 228, 284
MwoI GCNNNNNNNGC 8 cut(s) 84, 232, 269, 278, 340, 349, 352, 823
NaeI GCCGGC 2 cut(s) 85, 213
NdeI CATATG 2 cut(s) 527, 604
NdeII GATC 3 cut(s) 621, 638, 1072
NgoMIV GCCGGC 2 cut(s) 83, 211
NlaIII CATG 6 cut(s) 139, 455, 499, 949, 961, 965
NlaIV GGNNCC 5 cut(s) 6, 210, 394, 468, 967
NmeAIII GCCGAG 1 cut(s) 95
NmuCI GTSAC 2 cut(s) 198, 521
NsiI ATGCAT 2 cut(s) 533, 963
NspI RCATGY 2 cut(s) 455, 961
PaeI GCATGC 1 cut(s) 961
PagI TCATGA 1 cut(s) 945
PciI ACATGT 1 cut(s) 451
PctI GAATGC 1 cut(s) 531
PdiI GCCGGC 2 cut(s) 85, 213
PfeI GAWTC 1 cut(s) 949
PflFI GACNNNGTC 2 cut(s) 289, 292
PflMI CCANNNNNTGG 3 cut(s) 839, 975, 1061
PfoI TCCNGGA 1 cut(s) 469
PleI GAGTC 1 cut(s) 875
PpsI GAGTC 1 cut(s) 875
PscI ACATGT 1 cut(s) 451
Psp6I CCWGG 5 cut(s) 236, 264, 469, 818, 832
PspGI CCWGG 5 cut(s) 236, 264, 469, 818, 832
PspN4I GGNNCC 5 cut(s) 6, 210, 394, 468, 967
PspPI GGNCC 9 cut(s) 89, 234, 262, 393, 484, 731, 749, 966, 986
PstI CTGCAG 1 cut(s) 748
PstNI CAGNNNCTG 2 cut(s) 265, 752
PsuI RGATCY 1 cut(s) 638
PsyI GACNNNGTC 2 cut(s) 289, 292
RsaI GTAC 2 cut(s) 245, 772
RsaNI GTAC 2 cut(s) 244, 771
Sau3AI GATC 3 cut(s) 621, 638, 1072
Sau96I GGNCC 9 cut(s) 89, 234, 262, 393, 484, 731, 749, 966, 986
SchI GAGTC 1 cut(s) 875
ScrFI CCNGG 5 cut(s) 238, 266, 471, 820, 834
SduI GDGCHC 1 cut(s) 678
SfaNI GCATC 4 cut(s) 572, 813, 854, 982
SfcI CTRYAG 1 cut(s) 744
SfiI GGCCNNNNNGGCC 2 cut(s) 269, 278
SgrAI CRCCGGYG 1 cut(s) 83
SinI GGWCC 4 cut(s) 393, 731, 966, 986
SphI GCATGC 1 cut(s) 961
Sse9I AATT 3 cut(s) 427, 1016, 1077
StyD4I CCNGG 5 cut(s) 236, 264, 469, 818, 832
StyI CCWWGG 1 cut(s) 655
TaaI ACNGT 3 cut(s) 463, 633, 877
TaiI ACGT 2 cut(s) 200, 293
TaqI TCGA 1 cut(s) 804
TasI AATT 3 cut(s) 427, 1016, 1077
TauI GCSGC 9 cut(s) 56, 59, 90, 167, 170, 272, 284, 366, 369
TfiI GAWTC 1 cut(s) 949
TscAI CASTG 4 cut(s) 636, 685, 741, 1009
TseFI GTSAC 2 cut(s) 198, 521
TseI GCWGC 8 cut(s) 328, 331, 343, 346, 349, 352, 743, 1040
Tsp45I GTSAC 2 cut(s) 198, 521
TspDTI ATGAA 4 cut(s) 869, 930, 934, 1029
TspRI CASTG 4 cut(s) 636, 685, 741, 1009
Tth111I GACNNNGTC 2 cut(s) 289, 292
Van91I CCANNNNNTGG 3 cut(s) 839, 975, 1061
VpaK11BI GGWCC 4 cut(s) 393, 731, 966, 986
XapI RAATTY 1 cut(s) 1077
XceI RCATGY 2 cut(s) 455, 961
XmiI GTMKAC 1 cut(s) 141
ZraI GACGTC 2 cut(s) 198, 291
Zsp2I ATGCAT 2 cut(s) 533, 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.