pycom04g20220

DNA-binding protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
21762770 .. 21766460
3691 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g20220.4

Sequence Viewer

Length: 1059 bp
ATGGAACCCAATGAAAACCAACTGAGCTCCTACTTCCAACACCCCACCACCGCCACGACCGCCACCGGCGCCGCTGCCACGACCACCCCCTCTCCGACCAATGGGCTCTTTCCCAACACACACTCCACTGATGGGTCCCACATGGTGTACTCTCACTCGGTTCCCTCCTCGGCGGTGACCTCGCCACTTGAGGCCCCCAAAAGGAAGCGGGGGCGGCCCAGAAAGTATGGCACGCCGGAGCAGGCTCTTGCGGCCAAGAAGGCAGCGACGACGTCGTCTCACTCCTCGTCCTCCAAGGAGAAGAAGGACCAACACGGTGCCATCTCGCCTTCGTATTCTGGGTCGACCAAGAAATCCCAGCAGTTTTCTTTTGGCAATGCAGGGCAAGGTTTTACACCACATGTTTTAAGTGTCGCTGCTGGGGAGGATGTGGGACAGAAAATTATGTTTTTCATGCAACAAAGTAAGCGTGAAATATGCATTCTATCTGCTTCTGGTACCATCTCAAATGCATCTCTCCGCCAACCAGCTACTTCAGGAGGCAACATTACATATGAGGGTCGCTTTGAGATTATTTCATTATCTGGGTCTTATGTACGTGCTGACCATGGAGGGAGGGCTGGTGGGCTCAGTGTATGCCTATCTAATACAGACGGACAAATCATTGGCGGTGGAGTTGGTGGGCCCCTGAAGGCTGCAGGCCCGGTGCAGGTTATTGTGGGCACATTTCAGATTGATGCCAAAAAGGATGCGACTGCTGGTGTAAAAGGAGATGCTTCTGCCACCAAGTTGCCATCGCCAGGGGAAATGATGAGCGGAGGCTTCCGCTCAACACTGGACTCTTCTGGAAGAACTCTTGTCAGGGGAAATGAAGATCAGCAACCTATGGGGGGAAGTCATTTCATGCTTCAAGGCATGCATGTCGCACCTTCACGGCCCACAGATTGGAGAGGTGGTCCGGATGCTAGAGCCTCAGGCGCTTATGAATTGACAGGAAGAGGAGGCCGTGCACCGAACCAATCTCCAGAGAACGGGGACTACGATCAAATTCAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

353

Amino Acids

36.58

Weight (kDa)

9.24

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011499)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 274
AatII GACGTC 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 700
Acc65I GGTACC 1 cut(s) 497
AccB1I GGYRCC 3 cut(s) 68, 317, 497
AccB7I CCANNNNNTGG 1 cut(s) 945
AccBSI CCGCTC 2 cut(s) 816, 828
AccI GTMKAC 1 cut(s) 344
AccIII TCCGGA 1 cut(s) 958
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 1047
AcuI CTGAAG 2 cut(s) 519, 710
AcyI GRCGYC 2 cut(s) 69, 272
AdeI CACNNNGTG 1 cut(s) 145
AfaI GTAC 3 cut(s) 149, 499, 597
AfiI CCNNNNNNNGG 8 cut(s) 101, 132, 201, 709, 800, 890, 945, 1031
AflIII ACRYGT 1 cut(s) 400
AgsI TTSAA 2 cut(s) 911, 1052
AjnI CCWGG 1 cut(s) 799
AluBI AGCT 2 cut(s) 27, 530
AluI AGCT 2 cut(s) 27, 530
Alw21I GWGCWC 2 cut(s) 29, 1012
Alw26I GTCTC 1 cut(s) 282
Alw44I GTGCAC 1 cut(s) 1008
Aor13HI TCCGGA 1 cut(s) 958
AoxI GGCC 7 cut(s) 192, 215, 252, 683, 700, 935, 1003
ApaI GGGCCC 1 cut(s) 687
ApaLI GTGCAC 1 cut(s) 1008
ApeKI GCWGC 4 cut(s) 74, 263, 416, 695
ApoI RAATTY 1 cut(s) 1047
Asp718I GGTACC 1 cut(s) 497
AspLEI GCGC 2 cut(s) 71, 980
AspS9I GGNCC 9 cut(s) 135, 193, 216, 307, 683, 684, 701, 936, 956
AsuC2I CCSGG 1 cut(s) 704
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 3 cut(s) 135, 307, 956
AxyI CCTNAGG 1 cut(s) 973
BaeGI GKGCMC 3 cut(s) 687, 725, 1012
BanI GGYRCC 3 cut(s) 68, 317, 497
BanII GRGCYC 4 cut(s) 29, 108, 630, 687
Bbv12I GWGCWC 2 cut(s) 29, 1012
BbvI GCAGC 4 cut(s) 61, 275, 403, 682
BccI CCATC 4 cut(s) 125, 329, 509, 802
BceAI ACGGC 2 cut(s) 950, 990
BcgI CGANNNNNNTGC 2 cut(s) 904, 938
BciT130I CCWGG 1 cut(s) 801
BcnI CCSGG 1 cut(s) 704
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 1 cut(s) 966
BfmI CTRYAG 1 cut(s) 696
BfoI RGCGCY 2 cut(s) 72, 981
BfuAI ACCTGC 1 cut(s) 700
BglI GCCNNNNNGGC 1 cut(s) 260
BisI GCNGC 7 cut(s) 72, 75, 215, 252, 264, 417, 696
BlsI GCNGC 7 cut(s) 73, 76, 216, 253, 265, 418, 697
Bme1390I CCNGG 2 cut(s) 704, 801
Bme18I GGWCC 3 cut(s) 135, 307, 956
BmgT120I GGNCC 9 cut(s) 135, 193, 216, 307, 683, 684, 701, 936, 956
BmrFI CCNGG 2 cut(s) 704, 801
BmsI GCATC 5 cut(s) 521, 727, 739, 763, 952
BpmI CTGGAG 1 cut(s) 1008
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 704
BsaAI YACGTR 1 cut(s) 599
BsaHI GRCGYC 2 cut(s) 69, 272
BsaJI CCNNGG 4 cut(s) 168, 294, 607, 800
BsaWI WCCGGW 1 cut(s) 958
BsaXI ACNNNNNCTCC 8 cut(s) 76, 106, 107, 137, 607, 637, 940, 970
Bsc4I CCNNNNNNNGG 8 cut(s) 101, 132, 201, 709, 800, 890, 945, 1031
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 840
Bse21I CCTNAGG 1 cut(s) 973
Bse3DI GCAATG 1 cut(s) 382
BseAI TCCGGA 1 cut(s) 958
BseBI CCWGG 1 cut(s) 801
BseDI CCNNGG 4 cut(s) 168, 294, 607, 800
BseGI GGATG 3 cut(s) 433, 754, 967
BseLI CCNNNNNNNGG 8 cut(s) 101, 132, 201, 709, 800, 890, 945, 1031
BseMI GCAATG 1 cut(s) 382
BseMII CTCAG 3 cut(s) 14, 643, 987
BseNI ACTGG 1 cut(s) 840
BseRI GAGGAG 3 cut(s) 157, 274, 1014
BseSI GKGCMC 3 cut(s) 687, 725, 1012
BseXI GCAGC 4 cut(s) 61, 275, 403, 682
BseYI CCCAGC 2 cut(s) 357, 419
BsgI GTGCAG 1 cut(s) 728
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 7 cut(s) 194, 217, 254, 685, 702, 937, 1005
BshNI GGYRCC 3 cut(s) 68, 317, 497
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 2 cut(s) 29, 1012
BsiSI CCGG 4 cut(s) 66, 236, 704, 959
BslFI GGGAC 3 cut(s) 121, 447, 1049
BslI CCNNNNNNNGG 8 cut(s) 101, 132, 201, 709, 800, 890, 945, 1031
BsmAI GTCTC 1 cut(s) 282
BsmBI CGTCTC 1 cut(s) 282
BsmFI GGGAC 3 cut(s) 121, 447, 1049
BsmI GAATGC 1 cut(s) 480
BsnI GGCC 7 cut(s) 194, 217, 254, 685, 702, 937, 1005
Bsp120I GGGCCC 1 cut(s) 683
Bsp1286I GDGCHC 6 cut(s) 29, 108, 630, 687, 725, 1012
Bsp13I TCCGGA 1 cut(s) 958
Bsp143I GATC 2 cut(s) 874, 1042
Bsp19I CCATGG 1 cut(s) 607
BspANI GGCC 7 cut(s) 194, 217, 254, 685, 702, 937, 1005
BspCNI CTCAG 3 cut(s) 15, 642, 986
BspEI TCCGGA 1 cut(s) 958
BspMAI CTGCAG 1 cut(s) 700
BspMI ACCTGC 1 cut(s) 700
BspT107I GGYRCC 3 cut(s) 68, 317, 497
BsrBI CCGCTC 2 cut(s) 816, 828
BsrDI GCAATG 1 cut(s) 382
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 1 cut(s) 840
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 4 cut(s) 168, 294, 607, 800
BssMI GATC 2 cut(s) 874, 1042
BssNI GRCGYC 2 cut(s) 69, 272
BssT1I CCWWGG 2 cut(s) 294, 607
Bst2UI CCWGG 1 cut(s) 801
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 2 cut(s) 847, 991
BstACI GRCGYC 2 cut(s) 69, 272
BstBAI YACGTR 1 cut(s) 599
BstC8I GCNNGC 4 cut(s) 233, 243, 700, 917
BstDEI CTNAG 3 cut(s) 23, 629, 973
BstDSI CCRYGG 1 cut(s) 607
BstEII GGTNACC 1 cut(s) 175
BstF5I GGATG 3 cut(s) 433, 754, 967
BstH2I RGCGCY 2 cut(s) 72, 981
BstHHI GCGC 2 cut(s) 71, 980
BstKTI GATC 2 cut(s) 877, 1045
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 2 cut(s) 874, 1042
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 6 cut(s) 59, 68, 214, 251, 260, 977
BstNI CCWGG 1 cut(s) 801
BstNSI RCATGY 3 cut(s) 404, 919, 923
BstPI GGTNACC 1 cut(s) 175
BstSCI CCNGG 2 cut(s) 702, 799
BstSFI CTRYAG 1 cut(s) 696
BstSLI GKGCMC 3 cut(s) 687, 725, 1012
BstV1I GCAGC 4 cut(s) 61, 275, 403, 682
Bsu36I CCTNAGG 1 cut(s) 973
BsuRI GGCC 7 cut(s) 194, 217, 254, 685, 702, 937, 1005
BtgI CCRYGG 1 cut(s) 607
BtgZI GCGATG 1 cut(s) 780
BtsCI GGATG 3 cut(s) 433, 754, 967
BtsIMutI CAGTG 3 cut(s) 126, 637, 833
BveI ACCTGC 1 cut(s) 700
Cac8I GCNNGC 4 cut(s) 233, 243, 700, 917
CfoI GCGC 2 cut(s) 71, 980
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 9 cut(s) 135, 193, 216, 307, 683, 684, 701, 936, 956
Csp6I GTAC 3 cut(s) 148, 498, 596
CviAII CATG 7 cut(s) 142, 401, 454, 608, 904, 916, 920
CviQI GTAC 3 cut(s) 148, 498, 596
DdeI CTNAG 3 cut(s) 23, 629, 973
DinI GGCGCC 1 cut(s) 70
DpnI GATC 2 cut(s) 876, 1044
DpnII GATC 2 cut(s) 874, 1042
DraIII CACNNNGTG 1 cut(s) 145
DrdI GACNNNNNNGTC 1 cut(s) 274
DseDI GACNNNNNNGTC 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 847, 991
EarI CTCTTC 2 cut(s) 847, 991
EciI GGCGGA 1 cut(s) 509
Ecl136II GAGCTC 1 cut(s) 27
Eco130I CCWWGG 2 cut(s) 294, 607
Eco24I GRGCYC 4 cut(s) 29, 108, 630, 687
Eco47I GGWCC 3 cut(s) 135, 307, 956
Eco53kI GAGCTC 1 cut(s) 27
Eco57I CTGAAG 2 cut(s) 519, 710
Eco81I CCTNAGG 1 cut(s) 973
Eco91I GGTNACC 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 27
EcoO109I RGGNCCY 3 cut(s) 135, 193, 684
EcoO65I GGTNACC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 799
EcoT14I CCWWGG 2 cut(s) 294, 607
EcoT22I ATGCAT 3 cut(s) 482, 514, 921
EcoT38I GRGCYC 4 cut(s) 29, 108, 630, 687
EgeI GGCGCC 1 cut(s) 70
EheI GGCGCC 1 cut(s) 70
ErhI CCWWGG 2 cut(s) 294, 607
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 7 cut(s) 145, 404, 457, 611, 907, 919, 923
FaqI GGGAC 3 cut(s) 121, 447, 1049
FatI CATG 7 cut(s) 141, 400, 453, 607, 903, 915, 919
FauI CCCGC 1 cut(s) 201
FauNDI CATATG 1 cut(s) 553
FblI GTMKAC 1 cut(s) 344
Fnu4HI GCNGC 7 cut(s) 72, 75, 215, 252, 264, 417, 696
FokI GGATG 3 cut(s) 440, 761, 974
FriOI GRGCYC 4 cut(s) 29, 108, 630, 687
Fsp4HI GCNGC 7 cut(s) 72, 75, 215, 252, 264, 417, 696
FspBI CTAG 1 cut(s) 966
GlaI GCGC 2 cut(s) 70, 979
GluI GCNGC 7 cut(s) 72, 75, 215, 252, 264, 417, 696
GsaI CCCAGC 2 cut(s) 361, 423
GsuI CTGGAG 1 cut(s) 1008
HaeII RGCGCY 2 cut(s) 72, 981
HaeIII GGCC 7 cut(s) 194, 217, 254, 685, 702, 937, 1005
HapII CCGG 4 cut(s) 66, 236, 704, 959
HhaI GCGC 2 cut(s) 71, 980
Hin1I GRCGYC 2 cut(s) 69, 272
Hin1II CATG 7 cut(s) 145, 404, 457, 611, 907, 919, 923
Hin6I GCGC 2 cut(s) 69, 978
HinP1I GCGC 2 cut(s) 69, 978
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 1 cut(s) 839
HpaII CCGG 4 cut(s) 66, 236, 704, 959
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 3 cut(s) 148, 345, 1010
Hpy188I TCNGA 2 cut(s) 96, 732
Hpy188III TCNNGA 5 cut(s) 537, 846, 959, 1025, 1052
Hpy8I GTNNAC 3 cut(s) 148, 345, 1010
Hpy99I CGWCG 3 cut(s) 271, 274, 277
HpyAV CCTTC 5 cut(s) 253, 298, 339, 685, 939
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 2 cut(s) 272, 598
HpyCH4V TGCA 8 cut(s) 380, 457, 480, 512, 698, 709, 919, 1010
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 68, 214, 251, 260, 977
HpyF3I CTNAG 3 cut(s) 23, 629, 973
HpySE526I ACGT 2 cut(s) 272, 598
Hsp92I GRCGYC 2 cut(s) 69, 272
Hsp92II CATG 7 cut(s) 145, 404, 457, 611, 907, 919, 923
HspAI GCGC 2 cut(s) 69, 978
KasI GGCGCC 1 cut(s) 68
KflI GGGWCCC 1 cut(s) 135
Kpn2I TCCGGA 1 cut(s) 958
KpnI GGTACC 1 cut(s) 501
Kzo9I GATC 2 cut(s) 874, 1042
LmnI GCTCC 2 cut(s) 32, 238
Lsp1109I GCAGC 4 cut(s) 61, 275, 403, 682
LweI GCATC 5 cut(s) 521, 727, 739, 763, 952
MaeI CTAG 1 cut(s) 966
MaeII ACGT 2 cut(s) 272, 598
MaeIII GTNAC 1 cut(s) 175
MalI GATC 2 cut(s) 876, 1044
MbiI CCGCTC 2 cut(s) 816, 828
MboI GATC 2 cut(s) 874, 1042
MboII GAAGA 5 cut(s) 313, 834, 861, 884, 1008
MhlI GDGCHC 6 cut(s) 29, 108, 630, 687, 725, 1012
MluCI AATT 3 cut(s) 441, 986, 1047
Mly113I GGCGCC 1 cut(s) 69
MlyI GAGTC 1 cut(s) 833
MmeI TCCRAC 2 cut(s) 61, 119
Mph1103I ATGCAT 3 cut(s) 482, 514, 921
MroI TCCGGA 1 cut(s) 958
MseI TTAA 1 cut(s) 407
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 4 cut(s) 66, 236, 704, 959
MspR9I CCNGG 2 cut(s) 704, 801
Mva1269I GAATGC 1 cut(s) 480
MvaI CCWGG 1 cut(s) 801
MwoI GCNNNNNNNGC 6 cut(s) 59, 68, 214, 251, 260, 977
NarI GGCGCC 1 cut(s) 69
NciI CCSGG 1 cut(s) 704
NcoI CCATGG 1 cut(s) 607
NdeI CATATG 1 cut(s) 553
NdeII GATC 2 cut(s) 874, 1042
NlaIII CATG 7 cut(s) 145, 404, 457, 611, 907, 919, 923
NmeAIII GCCGAG 1 cut(s) 149
NmuCI GTSAC 1 cut(s) 175
NsiI ATGCAT 3 cut(s) 482, 514, 921
NspI RCATGY 3 cut(s) 404, 919, 923
PaeI GCATGC 1 cut(s) 919
PciI ACATGT 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 1038
PctI GAATGC 1 cut(s) 480
PflFI GACNNNGTC 2 cut(s) 271, 274
PflMI CCANNNNNTGG 1 cut(s) 945
PkrI GCNGC 7 cut(s) 73, 76, 216, 253, 265, 418, 697
PleI GAGTC 1 cut(s) 833
PluTI GGCGCC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 833
Ppu21I YACGTR 1 cut(s) 599
PpuMI RGGWCCY 1 cut(s) 135
PscI ACATGT 1 cut(s) 400
Psp124BI GAGCTC 1 cut(s) 29
Psp5II RGGWCCY 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 799
PspEI GGTNACC 1 cut(s) 175
PspFI CCCAGC 2 cut(s) 357, 419
PspGI CCWGG 1 cut(s) 799
PspOMI GGGCCC 1 cut(s) 683
PspPI GGNCC 9 cut(s) 135, 193, 216, 307, 683, 684, 701, 936, 956
PspPPI RGGWCCY 1 cut(s) 135
PsrI GAACNNNNNNTAC 2 cut(s) 1022, 1054
PstI CTGCAG 1 cut(s) 700
PsyI GACNNNGTC 2 cut(s) 271, 274
RsaI GTAC 3 cut(s) 149, 499, 597
RsaNI GTAC 3 cut(s) 148, 498, 596
SacI GAGCTC 1 cut(s) 29
SalI GTCGAC 1 cut(s) 343
SaqAI TTAA 1 cut(s) 407
SatI GCNGC 7 cut(s) 72, 75, 215, 252, 264, 417, 696
Sau3AI GATC 2 cut(s) 874, 1042
Sau96I GGNCC 9 cut(s) 135, 193, 216, 307, 683, 684, 701, 936, 956
SchI GAGTC 1 cut(s) 833
ScrFI CCNGG 2 cut(s) 704, 801
SduI GDGCHC 6 cut(s) 29, 108, 630, 687, 725, 1012
SfaNI GCATC 5 cut(s) 521, 727, 739, 763, 952
SfcI CTRYAG 1 cut(s) 696
SfoI GGCGCC 1 cut(s) 70
SgrAI CRCCGGYG 1 cut(s) 65
SinI GGWCC 3 cut(s) 135, 307, 956
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
SphI GCATGC 1 cut(s) 919
Sse9I AATT 3 cut(s) 441, 986, 1047
SspDI GGCGCC 1 cut(s) 68
SspMI CTAG 1 cut(s) 966
SstI GAGCTC 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 702, 799
StyI CCWWGG 2 cut(s) 294, 607
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 2 cut(s) 275, 601
TaqI TCGA 1 cut(s) 344
TasI AATT 3 cut(s) 441, 986, 1047
TatI WGTACW 1 cut(s) 147
TauI GCSGC 3 cut(s) 74, 217, 254
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TscAI CASTG 3 cut(s) 133, 637, 840
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 4 cut(s) 74, 263, 416, 695
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 6 cut(s) 27, 442, 567, 885, 892, 999
TspGWI ACGGA 1 cut(s) 669
TspRI CASTG 3 cut(s) 133, 637, 840
Tth111I GACNNNGTC 2 cut(s) 271, 274
Van91I CCANNNNNTGG 1 cut(s) 945
VneI GTGCAC 1 cut(s) 1008
VpaK11BI GGWCC 3 cut(s) 135, 307, 956
XapI RAATTY 1 cut(s) 1047
XceI RCATGY 3 cut(s) 404, 919, 923
XmiI GTMKAC 1 cut(s) 344
XspI CTAG 1 cut(s) 966
ZraI GACGTC 1 cut(s) 273
Zsp2I ATGCAT 3 cut(s) 482, 514, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.