DNA-binding protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G04590 AT3G04590 |
| fragaria_vesca | FvH4_6g02360 FvH4_6g02360 |
| malus_domestica | MD00G1114400.v1.1 MD12G1245000.v1.1 |
| prunus_persica | Prupe.6G347600_v2.0.a1 Prupe.6G347600_v2.0.a1 |
| pyrus_communis | pycom04g20220 pycom12g22470 |
| rosa_chinensis | RchiOBHm_Chr3g0450121 |
| rosa_laevigata | RLG00000025754 |
| rosa_multiflora | Rmu_ssc0000116.1_g000066 |
| rosa_roxburghii | Rroxscaffold_6G00427890 |
| rosa_rugosa | Rorug02G0625700 |
| rosa_samantha | Rh3AG024900 Rh3BG025500 Rh3CG024400 Rh3DG025500 |
| rosa_wichuraiana | Rw3G001990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 274 |
| AatII | GACGTC | 1 cut(s) | 275 |
| Acc36I | ACCTGC | 1 cut(s) | 700 |
| Acc65I | GGTACC | 1 cut(s) | 497 |
| AccB1I | GGYRCC | 3 cut(s) | 68, 317, 497 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 945 |
| AccBSI | CCGCTC | 2 cut(s) | 816, 828 |
| AccI | GTMKAC | 1 cut(s) | 344 |
| AccIII | TCCGGA | 1 cut(s) | 958 |
| AcoI | YGGCCR | 1 cut(s) | 252 |
| AcsI | RAATTY | 1 cut(s) | 1047 |
| AcuI | CTGAAG | 2 cut(s) | 519, 710 |
| AcyI | GRCGYC | 2 cut(s) | 69, 272 |
| AdeI | CACNNNGTG | 1 cut(s) | 145 |
| AfaI | GTAC | 3 cut(s) | 149, 499, 597 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 101, 132, 201, 709, 800, 890, 945, 1031 |
| AflIII | ACRYGT | 1 cut(s) | 400 |
| AgsI | TTSAA | 2 cut(s) | 911, 1052 |
| AjnI | CCWGG | 1 cut(s) | 799 |
| AluBI | AGCT | 2 cut(s) | 27, 530 |
| AluI | AGCT | 2 cut(s) | 27, 530 |
| Alw21I | GWGCWC | 2 cut(s) | 29, 1012 |
| Alw26I | GTCTC | 1 cut(s) | 282 |
| Alw44I | GTGCAC | 1 cut(s) | 1008 |
| Aor13HI | TCCGGA | 1 cut(s) | 958 |
| AoxI | GGCC | 7 cut(s) | 192, 215, 252, 683, 700, 935, 1003 |
| ApaI | GGGCCC | 1 cut(s) | 687 |
| ApaLI | GTGCAC | 1 cut(s) | 1008 |
| ApeKI | GCWGC | 4 cut(s) | 74, 263, 416, 695 |
| ApoI | RAATTY | 1 cut(s) | 1047 |
| Asp718I | GGTACC | 1 cut(s) | 497 |
| AspLEI | GCGC | 2 cut(s) | 71, 980 |
| AspS9I | GGNCC | 9 cut(s) | 135, 193, 216, 307, 683, 684, 701, 936, 956 |
| AsuC2I | CCSGG | 1 cut(s) | 704 |
| AsuHPI | GGTGA | 1 cut(s) | 187 |
| AvaII | GGWCC | 3 cut(s) | 135, 307, 956 |
| AxyI | CCTNAGG | 1 cut(s) | 973 |
| BaeGI | GKGCMC | 3 cut(s) | 687, 725, 1012 |
| BanI | GGYRCC | 3 cut(s) | 68, 317, 497 |
| BanII | GRGCYC | 4 cut(s) | 29, 108, 630, 687 |
| Bbv12I | GWGCWC | 2 cut(s) | 29, 1012 |
| BbvI | GCAGC | 4 cut(s) | 61, 275, 403, 682 |
| BccI | CCATC | 4 cut(s) | 125, 329, 509, 802 |
| BceAI | ACGGC | 2 cut(s) | 950, 990 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 904, 938 |
| BciT130I | CCWGG | 1 cut(s) | 801 |
| BcnI | CCSGG | 1 cut(s) | 704 |
| BcoDI | GTCTC | 1 cut(s) | 282 |
| BfaI | CTAG | 1 cut(s) | 966 |
| BfmI | CTRYAG | 1 cut(s) | 696 |
| BfoI | RGCGCY | 2 cut(s) | 72, 981 |
| BfuAI | ACCTGC | 1 cut(s) | 700 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 260 |
| BisI | GCNGC | 7 cut(s) | 72, 75, 215, 252, 264, 417, 696 |
| BlsI | GCNGC | 7 cut(s) | 73, 76, 216, 253, 265, 418, 697 |
| Bme1390I | CCNGG | 2 cut(s) | 704, 801 |
| Bme18I | GGWCC | 3 cut(s) | 135, 307, 956 |
| BmgT120I | GGNCC | 9 cut(s) | 135, 193, 216, 307, 683, 684, 701, 936, 956 |
| BmrFI | CCNGG | 2 cut(s) | 704, 801 |
| BmsI | GCATC | 5 cut(s) | 521, 727, 739, 763, 952 |
| BpmI | CTGGAG | 1 cut(s) | 1008 |
| BpuEI | CTTGAG | 1 cut(s) | 209 |
| BpuMI | CCSGG | 1 cut(s) | 704 |
| BsaAI | YACGTR | 1 cut(s) | 599 |
| BsaHI | GRCGYC | 2 cut(s) | 69, 272 |
| BsaJI | CCNNGG | 4 cut(s) | 168, 294, 607, 800 |
| BsaWI | WCCGGW | 1 cut(s) | 958 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 76, 106, 107, 137, 607, 637, 940, 970 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 101, 132, 201, 709, 800, 890, 945, 1031 |
| Bse118I | RCCGGY | 1 cut(s) | 65 |
| Bse1I | ACTGG | 1 cut(s) | 840 |
| Bse21I | CCTNAGG | 1 cut(s) | 973 |
| Bse3DI | GCAATG | 1 cut(s) | 382 |
| BseAI | TCCGGA | 1 cut(s) | 958 |
| BseBI | CCWGG | 1 cut(s) | 801 |
| BseDI | CCNNGG | 4 cut(s) | 168, 294, 607, 800 |
| BseGI | GGATG | 3 cut(s) | 433, 754, 967 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 101, 132, 201, 709, 800, 890, 945, 1031 |
| BseMI | GCAATG | 1 cut(s) | 382 |
| BseMII | CTCAG | 3 cut(s) | 14, 643, 987 |
| BseNI | ACTGG | 1 cut(s) | 840 |
| BseRI | GAGGAG | 3 cut(s) | 157, 274, 1014 |
| BseSI | GKGCMC | 3 cut(s) | 687, 725, 1012 |
| BseXI | GCAGC | 4 cut(s) | 61, 275, 403, 682 |
| BseYI | CCCAGC | 2 cut(s) | 357, 419 |
| BsgI | GTGCAG | 1 cut(s) | 728 |
| Bsh1285I | CGRYCG | 1 cut(s) | 60 |
| BshFI | GGCC | 7 cut(s) | 194, 217, 254, 685, 702, 937, 1005 |
| BshNI | GGYRCC | 3 cut(s) | 68, 317, 497 |
| BsiEI | CGRYCG | 1 cut(s) | 60 |
| BsiHKAI | GWGCWC | 2 cut(s) | 29, 1012 |
| BsiSI | CCGG | 4 cut(s) | 66, 236, 704, 959 |
| BslFI | GGGAC | 3 cut(s) | 121, 447, 1049 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 101, 132, 201, 709, 800, 890, 945, 1031 |
| BsmAI | GTCTC | 1 cut(s) | 282 |
| BsmBI | CGTCTC | 1 cut(s) | 282 |
| BsmFI | GGGAC | 3 cut(s) | 121, 447, 1049 |
| BsmI | GAATGC | 1 cut(s) | 480 |
| BsnI | GGCC | 7 cut(s) | 194, 217, 254, 685, 702, 937, 1005 |
| Bsp120I | GGGCCC | 1 cut(s) | 683 |
| Bsp1286I | GDGCHC | 6 cut(s) | 29, 108, 630, 687, 725, 1012 |
| Bsp13I | TCCGGA | 1 cut(s) | 958 |
| Bsp143I | GATC | 2 cut(s) | 874, 1042 |
| Bsp19I | CCATGG | 1 cut(s) | 607 |
| BspANI | GGCC | 7 cut(s) | 194, 217, 254, 685, 702, 937, 1005 |
| BspCNI | CTCAG | 3 cut(s) | 15, 642, 986 |
| BspEI | TCCGGA | 1 cut(s) | 958 |
| BspMAI | CTGCAG | 1 cut(s) | 700 |
| BspMI | ACCTGC | 1 cut(s) | 700 |
| BspT107I | GGYRCC | 3 cut(s) | 68, 317, 497 |
| BsrBI | CCGCTC | 2 cut(s) | 816, 828 |
| BsrDI | GCAATG | 1 cut(s) | 382 |
| BsrFI | RCCGGY | 1 cut(s) | 65 |
| BsrI | ACTGG | 1 cut(s) | 840 |
| BssAI | RCCGGY | 1 cut(s) | 65 |
| BssECI | CCNNGG | 4 cut(s) | 168, 294, 607, 800 |
| BssMI | GATC | 2 cut(s) | 874, 1042 |
| BssNI | GRCGYC | 2 cut(s) | 69, 272 |
| BssT1I | CCWWGG | 2 cut(s) | 294, 607 |
| Bst2UI | CCWGG | 1 cut(s) | 801 |
| Bst4CI | ACNGT | 1 cut(s) | 317 |
| Bst6I | CTCTTC | 2 cut(s) | 847, 991 |
| BstACI | GRCGYC | 2 cut(s) | 69, 272 |
| BstBAI | YACGTR | 1 cut(s) | 599 |
| BstC8I | GCNNGC | 4 cut(s) | 233, 243, 700, 917 |
| BstDEI | CTNAG | 3 cut(s) | 23, 629, 973 |
| BstDSI | CCRYGG | 1 cut(s) | 607 |
| BstEII | GGTNACC | 1 cut(s) | 175 |
| BstF5I | GGATG | 3 cut(s) | 433, 754, 967 |
| BstH2I | RGCGCY | 2 cut(s) | 72, 981 |
| BstHHI | GCGC | 2 cut(s) | 71, 980 |
| BstKTI | GATC | 2 cut(s) | 877, 1045 |
| BstMAI | GTCTC | 1 cut(s) | 282 |
| BstMBI | GATC | 2 cut(s) | 874, 1042 |
| BstMCI | CGRYCG | 1 cut(s) | 60 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 59, 68, 214, 251, 260, 977 |
| BstNI | CCWGG | 1 cut(s) | 801 |
| BstNSI | RCATGY | 3 cut(s) | 404, 919, 923 |
| BstPI | GGTNACC | 1 cut(s) | 175 |
| BstSCI | CCNGG | 2 cut(s) | 702, 799 |
| BstSFI | CTRYAG | 1 cut(s) | 696 |
| BstSLI | GKGCMC | 3 cut(s) | 687, 725, 1012 |
| BstV1I | GCAGC | 4 cut(s) | 61, 275, 403, 682 |
| Bsu36I | CCTNAGG | 1 cut(s) | 973 |
| BsuRI | GGCC | 7 cut(s) | 194, 217, 254, 685, 702, 937, 1005 |
| BtgI | CCRYGG | 1 cut(s) | 607 |
| BtgZI | GCGATG | 1 cut(s) | 780 |
| BtsCI | GGATG | 3 cut(s) | 433, 754, 967 |
| BtsIMutI | CAGTG | 3 cut(s) | 126, 637, 833 |
| BveI | ACCTGC | 1 cut(s) | 700 |
| Cac8I | GCNNGC | 4 cut(s) | 233, 243, 700, 917 |
| CfoI | GCGC | 2 cut(s) | 71, 980 |
| Cfr10I | RCCGGY | 1 cut(s) | 65 |
| Cfr13I | GGNCC | 9 cut(s) | 135, 193, 216, 307, 683, 684, 701, 936, 956 |
| Csp6I | GTAC | 3 cut(s) | 148, 498, 596 |
| CviAII | CATG | 7 cut(s) | 142, 401, 454, 608, 904, 916, 920 |
| CviQI | GTAC | 3 cut(s) | 148, 498, 596 |
| DdeI | CTNAG | 3 cut(s) | 23, 629, 973 |
| DinI | GGCGCC | 1 cut(s) | 70 |
| DpnI | GATC | 2 cut(s) | 876, 1044 |
| DpnII | GATC | 2 cut(s) | 874, 1042 |
| DraIII | CACNNNGTG | 1 cut(s) | 145 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 274 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 274 |
| EaeI | YGGCCR | 1 cut(s) | 252 |
| Eam1104I | CTCTTC | 2 cut(s) | 847, 991 |
| EarI | CTCTTC | 2 cut(s) | 847, 991 |
| EciI | GGCGGA | 1 cut(s) | 509 |
| Ecl136II | GAGCTC | 1 cut(s) | 27 |
| Eco130I | CCWWGG | 2 cut(s) | 294, 607 |
| Eco24I | GRGCYC | 4 cut(s) | 29, 108, 630, 687 |
| Eco47I | GGWCC | 3 cut(s) | 135, 307, 956 |
| Eco53kI | GAGCTC | 1 cut(s) | 27 |
| Eco57I | CTGAAG | 2 cut(s) | 519, 710 |
| Eco81I | CCTNAGG | 1 cut(s) | 973 |
| Eco91I | GGTNACC | 1 cut(s) | 175 |
| EcoICRI | GAGCTC | 1 cut(s) | 27 |
| EcoO109I | RGGNCCY | 3 cut(s) | 135, 193, 684 |
| EcoO65I | GGTNACC | 1 cut(s) | 175 |
| EcoRII | CCWGG | 1 cut(s) | 799 |
| EcoT14I | CCWWGG | 2 cut(s) | 294, 607 |
| EcoT22I | ATGCAT | 3 cut(s) | 482, 514, 921 |
| EcoT38I | GRGCYC | 4 cut(s) | 29, 108, 630, 687 |
| EgeI | GGCGCC | 1 cut(s) | 70 |
| EheI | GGCGCC | 1 cut(s) | 70 |
| ErhI | CCWWGG | 2 cut(s) | 294, 607 |
| Esp3I | CGTCTC | 1 cut(s) | 282 |
| FaeI | CATG | 7 cut(s) | 145, 404, 457, 611, 907, 919, 923 |
| FaqI | GGGAC | 3 cut(s) | 121, 447, 1049 |
| FatI | CATG | 7 cut(s) | 141, 400, 453, 607, 903, 915, 919 |
| FauI | CCCGC | 1 cut(s) | 201 |
| FauNDI | CATATG | 1 cut(s) | 553 |
| FblI | GTMKAC | 1 cut(s) | 344 |
| Fnu4HI | GCNGC | 7 cut(s) | 72, 75, 215, 252, 264, 417, 696 |
| FokI | GGATG | 3 cut(s) | 440, 761, 974 |
| FriOI | GRGCYC | 4 cut(s) | 29, 108, 630, 687 |
| Fsp4HI | GCNGC | 7 cut(s) | 72, 75, 215, 252, 264, 417, 696 |
| FspBI | CTAG | 1 cut(s) | 966 |
| GlaI | GCGC | 2 cut(s) | 70, 979 |
| GluI | GCNGC | 7 cut(s) | 72, 75, 215, 252, 264, 417, 696 |
| GsaI | CCCAGC | 2 cut(s) | 361, 423 |
| GsuI | CTGGAG | 1 cut(s) | 1008 |
| HaeII | RGCGCY | 2 cut(s) | 72, 981 |
| HaeIII | GGCC | 7 cut(s) | 194, 217, 254, 685, 702, 937, 1005 |
| HapII | CCGG | 4 cut(s) | 66, 236, 704, 959 |
| HhaI | GCGC | 2 cut(s) | 71, 980 |
| Hin1I | GRCGYC | 2 cut(s) | 69, 272 |
| Hin1II | CATG | 7 cut(s) | 145, 404, 457, 611, 907, 919, 923 |
| Hin6I | GCGC | 2 cut(s) | 69, 978 |
| HinP1I | GCGC | 2 cut(s) | 69, 978 |
| HincII | GTYRAC | 1 cut(s) | 345 |
| HindII | GTYRAC | 1 cut(s) | 345 |
| HinfI | GANTC | 1 cut(s) | 839 |
| HpaII | CCGG | 4 cut(s) | 66, 236, 704, 959 |
| HphI | GGTGA | 1 cut(s) | 187 |
| Hpy166II | GTNNAC | 3 cut(s) | 148, 345, 1010 |
| Hpy188I | TCNGA | 2 cut(s) | 96, 732 |
| Hpy188III | TCNNGA | 5 cut(s) | 537, 846, 959, 1025, 1052 |
| Hpy8I | GTNNAC | 3 cut(s) | 148, 345, 1010 |
| Hpy99I | CGWCG | 3 cut(s) | 271, 274, 277 |
| HpyAV | CCTTC | 5 cut(s) | 253, 298, 339, 685, 939 |
| HpyCH4III | ACNGT | 1 cut(s) | 317 |
| HpyCH4IV | ACGT | 2 cut(s) | 272, 598 |
| HpyCH4V | TGCA | 8 cut(s) | 380, 457, 480, 512, 698, 709, 919, 1010 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 59, 68, 214, 251, 260, 977 |
| HpyF3I | CTNAG | 3 cut(s) | 23, 629, 973 |
| HpySE526I | ACGT | 2 cut(s) | 272, 598 |
| Hsp92I | GRCGYC | 2 cut(s) | 69, 272 |
| Hsp92II | CATG | 7 cut(s) | 145, 404, 457, 611, 907, 919, 923 |
| HspAI | GCGC | 2 cut(s) | 69, 978 |
| KasI | GGCGCC | 1 cut(s) | 68 |
| KflI | GGGWCCC | 1 cut(s) | 135 |
| Kpn2I | TCCGGA | 1 cut(s) | 958 |
| KpnI | GGTACC | 1 cut(s) | 501 |
| Kzo9I | GATC | 2 cut(s) | 874, 1042 |
| LmnI | GCTCC | 2 cut(s) | 32, 238 |
| Lsp1109I | GCAGC | 4 cut(s) | 61, 275, 403, 682 |
| LweI | GCATC | 5 cut(s) | 521, 727, 739, 763, 952 |
| MaeI | CTAG | 1 cut(s) | 966 |
| MaeII | ACGT | 2 cut(s) | 272, 598 |
| MaeIII | GTNAC | 1 cut(s) | 175 |
| MalI | GATC | 2 cut(s) | 876, 1044 |
| MbiI | CCGCTC | 2 cut(s) | 816, 828 |
| MboI | GATC | 2 cut(s) | 874, 1042 |
| MboII | GAAGA | 5 cut(s) | 313, 834, 861, 884, 1008 |
| MhlI | GDGCHC | 6 cut(s) | 29, 108, 630, 687, 725, 1012 |
| MluCI | AATT | 3 cut(s) | 441, 986, 1047 |
| Mly113I | GGCGCC | 1 cut(s) | 69 |
| MlyI | GAGTC | 1 cut(s) | 833 |
| MmeI | TCCRAC | 2 cut(s) | 61, 119 |
| Mph1103I | ATGCAT | 3 cut(s) | 482, 514, 921 |
| MroI | TCCGGA | 1 cut(s) | 958 |
| MseI | TTAA | 1 cut(s) | 407 |
| MspA1I | CMGCKG | 1 cut(s) | 74 |
| MspI | CCGG | 4 cut(s) | 66, 236, 704, 959 |
| MspR9I | CCNGG | 2 cut(s) | 704, 801 |
| Mva1269I | GAATGC | 1 cut(s) | 480 |
| MvaI | CCWGG | 1 cut(s) | 801 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 59, 68, 214, 251, 260, 977 |
| NarI | GGCGCC | 1 cut(s) | 69 |
| NciI | CCSGG | 1 cut(s) | 704 |
| NcoI | CCATGG | 1 cut(s) | 607 |
| NdeI | CATATG | 1 cut(s) | 553 |
| NdeII | GATC | 2 cut(s) | 874, 1042 |
| NlaIII | CATG | 7 cut(s) | 145, 404, 457, 611, 907, 919, 923 |
| NmeAIII | GCCGAG | 1 cut(s) | 149 |
| NmuCI | GTSAC | 1 cut(s) | 175 |
| NsiI | ATGCAT | 3 cut(s) | 482, 514, 921 |
| NspI | RCATGY | 3 cut(s) | 404, 919, 923 |
| PaeI | GCATGC | 1 cut(s) | 919 |
| PciI | ACATGT | 1 cut(s) | 400 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1038 |
| PctI | GAATGC | 1 cut(s) | 480 |
| PflFI | GACNNNGTC | 2 cut(s) | 271, 274 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 945 |
| PkrI | GCNGC | 7 cut(s) | 73, 76, 216, 253, 265, 418, 697 |
| PleI | GAGTC | 1 cut(s) | 833 |
| PluTI | GGCGCC | 1 cut(s) | 72 |
| PpsI | GAGTC | 1 cut(s) | 833 |
| Ppu21I | YACGTR | 1 cut(s) | 599 |
| PpuMI | RGGWCCY | 1 cut(s) | 135 |
| PscI | ACATGT | 1 cut(s) | 400 |
| Psp124BI | GAGCTC | 1 cut(s) | 29 |
| Psp5II | RGGWCCY | 1 cut(s) | 135 |
| Psp6I | CCWGG | 1 cut(s) | 799 |
| PspEI | GGTNACC | 1 cut(s) | 175 |
| PspFI | CCCAGC | 2 cut(s) | 357, 419 |
| PspGI | CCWGG | 1 cut(s) | 799 |
| PspOMI | GGGCCC | 1 cut(s) | 683 |
| PspPI | GGNCC | 9 cut(s) | 135, 193, 216, 307, 683, 684, 701, 936, 956 |
| PspPPI | RGGWCCY | 1 cut(s) | 135 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1022, 1054 |
| PstI | CTGCAG | 1 cut(s) | 700 |
| PsyI | GACNNNGTC | 2 cut(s) | 271, 274 |
| RsaI | GTAC | 3 cut(s) | 149, 499, 597 |
| RsaNI | GTAC | 3 cut(s) | 148, 498, 596 |
| SacI | GAGCTC | 1 cut(s) | 29 |
| SalI | GTCGAC | 1 cut(s) | 343 |
| SaqAI | TTAA | 1 cut(s) | 407 |
| SatI | GCNGC | 7 cut(s) | 72, 75, 215, 252, 264, 417, 696 |
| Sau3AI | GATC | 2 cut(s) | 874, 1042 |
| Sau96I | GGNCC | 9 cut(s) | 135, 193, 216, 307, 683, 684, 701, 936, 956 |
| SchI | GAGTC | 1 cut(s) | 833 |
| ScrFI | CCNGG | 2 cut(s) | 704, 801 |
| SduI | GDGCHC | 6 cut(s) | 29, 108, 630, 687, 725, 1012 |
| SfaNI | GCATC | 5 cut(s) | 521, 727, 739, 763, 952 |
| SfcI | CTRYAG | 1 cut(s) | 696 |
| SfoI | GGCGCC | 1 cut(s) | 70 |
| SgrAI | CRCCGGYG | 1 cut(s) | 65 |
| SinI | GGWCC | 3 cut(s) | 135, 307, 956 |
| SmlI | CTYRAG | 1 cut(s) | 188 |
| SmoI | CTYRAG | 1 cut(s) | 188 |
| SphI | GCATGC | 1 cut(s) | 919 |
| Sse9I | AATT | 3 cut(s) | 441, 986, 1047 |
| SspDI | GGCGCC | 1 cut(s) | 68 |
| SspMI | CTAG | 1 cut(s) | 966 |
| SstI | GAGCTC | 1 cut(s) | 29 |
| StyD4I | CCNGG | 2 cut(s) | 702, 799 |
| StyI | CCWWGG | 2 cut(s) | 294, 607 |
| TaaI | ACNGT | 1 cut(s) | 317 |
| TaiI | ACGT | 2 cut(s) | 275, 601 |
| TaqI | TCGA | 1 cut(s) | 344 |
| TasI | AATT | 3 cut(s) | 441, 986, 1047 |
| TatI | WGTACW | 1 cut(s) | 147 |
| TauI | GCSGC | 3 cut(s) | 74, 217, 254 |
| Tru1I | TTAA | 1 cut(s) | 407 |
| Tru9I | TTAA | 1 cut(s) | 407 |
| TscAI | CASTG | 3 cut(s) | 133, 637, 840 |
| TseFI | GTSAC | 1 cut(s) | 175 |
| TseI | GCWGC | 4 cut(s) | 74, 263, 416, 695 |
| Tsp45I | GTSAC | 1 cut(s) | 175 |
| TspDTI | ATGAA | 6 cut(s) | 27, 442, 567, 885, 892, 999 |
| TspGWI | ACGGA | 1 cut(s) | 669 |
| TspRI | CASTG | 3 cut(s) | 133, 637, 840 |
| Tth111I | GACNNNGTC | 2 cut(s) | 271, 274 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 945 |
| VneI | GTGCAC | 1 cut(s) | 1008 |
| VpaK11BI | GGWCC | 3 cut(s) | 135, 307, 956 |
| XapI | RAATTY | 1 cut(s) | 1047 |
| XceI | RCATGY | 3 cut(s) | 404, 919, 923 |
| XmiI | GTMKAC | 1 cut(s) | 344 |
| XspI | CTAG | 1 cut(s) | 966 |
| ZraI | GACGTC | 1 cut(s) | 273 |
| Zsp2I | ATGCAT | 3 cut(s) | 482, 514, 921 |