Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016670

Physical Location & Seq

Genomic Coordinates Forward (+)

1648336 .. 1650158

Gene Structure 1823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g02930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGCACTCTCTGCCAAGACTTAGAGCTCTTTCTCTCCTAAACCTGAAACTGAAATCCACACACCAATTGAAGCAAGCCCATGCCCAGTTGATTACCAATGGTCTCAAGTCAACTTCCATATATGGCAAGCTAATCCAGCACTACTGTGCCTTATCAGACCCAGAAAGCACCAGCCTTTATGCCCATTTAGTATTCAAACACTTTGATGAGCCTAATCTGTTCTTGTTGAACACTTTGATTAGATGCACTCAACCTAAAGACTCCATTTTTCTTTTTGCCAACTGGGTTTCTGAAGCAAGCTTGTGTTTTGATGACTTTACTTACAAGTTTGTTCTTGGAGCTTGTGCTAGGTTACCTTCAGTACCAACATTAGTTGTAGGTAGAGAAATTCAAGCCCGGATAGTAAAAGAGGGTATCATATCAAACATTTTAGTGCAAACTACTTTACTACATTTTTATGCTAGTAATAAGGACCTTGGTTCAGCACGTAAGATGTTCGATGAAATGTCTGAGAGAAATAGTGTTACGTGGAATGCAATGATCACGGGGTACTCTTCGCAAAGAGAAAGTGCCCGGGATGCATTGCTGTTGTTTCGGGACATGTTGTATGGCGATTCTGGGGTGAAACCTAATGATACTACAATGGTTTGCGTTCTTTCGGCGGCTGCTCAGTTGGGTGTGTTGGAGACTGGTGCTTGTGTACATGGTTATGTAGAGAAGACAATGCCTGCTTCTGATAGGGATGTTTTTATGGGAACTGGTGTTGTTGATATGTACTCGAAATGTGGGAGTGTGGATTGTGCTTTAACCGTTTTTAAGCGCATGAAACAGAGAAATGTCTTGACTTGGACAGCAATGGCAACAGGGCTGGCTATTCATGGTAAGGCAAGTGAAGCACTGGAGCTTTTGGATGTAATGAAAGCTCATGGAACAAACCCAAATTCAGTGACTTTCACCAGCTTGCTTACAGCTTGCTGCCATGTCGGGATTGTTGATGAAGGCCTCCATTTGTTCCATATGATGAAGAGCAAGTTTGGAGTCACGCCTCAGATGCAGCATTACGGTTGCATAGTCGATCTGCTTAGCCGAAGTGGGCATTTGAATGAAGCCTATGACTTTATAGTAACAATGCCAGTTGAACCTGATGCTGTCTTGTGGAGGAGTTTGCTAAGTGCATGCAATGTTCATGGGGATGTCTCAATGGGAGAGAAGGTAGGTAAGAAGCTGCTCCGCATCCAGCTGGCGCAGAGTTCTACAGATGCAACTCCAAAGAGTGAAGACTATGTAGCTTTGTCGAACATTTATGCTCATGCTGAAAAGTGGGATGCTGTGGAGATGGTGAGAGATGAGATGAAGGTCATGAGAATAGAAAATAAAGCTGGCTCTAGTTCAGTTCAAACTACTAGCAATCATGTCCTGGACGGGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

477

Amino Acids

52.6

Weight (kDa)

7.0

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	172 - 221	6.7e-07	PPR repeat family
PPR_2	PF13041	278 - 327	1.3e-11	PPR repeat family
PPR_long	PF17177	292 - 395	4.8e-06	Pentacotripeptide-repeat region of PRORP
E_motif	PF20431	425 - 466	4.5e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18970
fragaria_vesca	FvH4_6g02930
malus_domestica	MD04G1224500.v1.1 MD12G1241200.v1.1
prunus_persica	Prupe.6G343200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0451131
rosa_laevigata	RLG00000025687
rosa_multiflora	Rmu_sc0039775.1_g000001 Rmu_ssc0000461.1_g000009
rosa_roxburghii	Rroxscaffold_6G00428600
rosa_rugosa	Rorug02G0631800
rosa_samantha	Rh3AG034600 Rh3DG034600
rosa_wichuraiana	Rw3G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	662, 1231
AcsI	RAATTY	2 cut(s)	387, 940
AcuI	CTGAAG	2 cut(s)	312, 342
AfaI	GTAC	4 cut(s)	363, 551, 702, 776
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	7 cut(s)	70, 196, 229, 392, 1102, 1139, 1397
AjnI	CCWGG	1 cut(s)	1416
AleI	CACNNNNGTG	1 cut(s)	144
Alw21I	GWGCWC	1 cut(s)	28
Alw26I	GTCTC	3 cut(s)	107, 680, 1201
Ama87I	CYCGRG	1 cut(s)	573
AoxI	GGCC	1 cut(s)	1000
ApeKI	GCWGC	4 cut(s)	665, 975, 1054, 1225
ApoI	RAATTY	2 cut(s)	387, 940
AspLEI	GCGC	2 cut(s)	822, 1246
AspS9I	GGNCC	1 cut(s)	472
AsuC2I	CCSGG	3 cut(s)	397, 574, 575
AsuHPI	GGTGA	3 cut(s)	634, 946, 1351
AvaI	CYCGRG	1 cut(s)	573
AvaII	GGWCC	1 cut(s)	472
BaeGI	GKGCMC	1 cut(s)	574
BanII	GRGCYC	1 cut(s)	28
BbsI	GAAGAC	2 cut(s)	725, 1284
Bbv12I	GWGCWC	1 cut(s)	28
BbvI	GCAGC	4 cut(s)	652, 962, 1066, 1212
BccI	CCATC	1 cut(s)	1330
BciT130I	CCWGG	1 cut(s)	1418
BclI	TGATCA	1 cut(s)	540
BcnI	CCSGG	3 cut(s)	397, 574, 575
BcoDI	GTCTC	3 cut(s)	107, 680, 1201
BfaI	CTAG	4 cut(s)	348, 462, 1386, 1404
BfmI	CTRYAG	1 cut(s)	1254
BisI	GCNGC	5 cut(s)	663, 666, 976, 1055, 1226
BlpI	GCTNAGC	1 cut(s)	1082
BlsI	GCNGC	5 cut(s)	664, 667, 977, 1056, 1227
Bme1390I	CCNGG	4 cut(s)	397, 574, 575, 1418
Bme18I	GGWCC	1 cut(s)	472
BmeT110I	CYCGRG	1 cut(s)	573
BmgT120I	GGNCC	1 cut(s)	472
BmrFI	CCNGG	4 cut(s)	397, 574, 575, 1418
BmrI	ACTGGG	2 cut(s)	79, 292
BmsI	GCATC	7 cut(s)	233, 568, 1041, 1135, 1242, 1249, 1315
BmuI	ACTGGG	2 cut(s)	79, 292
BpiI	GAAGAC	2 cut(s)	725, 1284
BpmI	CTGGAG	1 cut(s)	920
Bpu1102I	GCTNAGC	1 cut(s)	1082
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	3 cut(s)	397, 574, 575
BsaAI	YACGTR	2 cut(s)	488, 528
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	475, 573
BsaXI	ACNNNNNCTCC	2 cut(s)	1197, 1227
Bse1I	ACTGG	6 cut(s)	85, 287, 694, 763, 903, 1133
Bse3DI	GCAATG	4 cut(s)	543, 581, 861, 1186
BseBI	CCWGG	1 cut(s)	1418
BseDI	CCNNGG	2 cut(s)	475, 573
BseGI	GGATG	6 cut(s)	583, 748, 916, 1198, 1233, 1330
BseMI	GCAATG	4 cut(s)	543, 581, 861, 1186
BseMII	CTCAG	3 cut(s)	501, 683, 1061
BseNI	ACTGG	6 cut(s)	85, 287, 694, 763, 903, 1133
BseRI	GAGGAG	1 cut(s)	1174
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	4 cut(s)	652, 962, 1066, 1212
BshFI	GGCC	1 cut(s)	1002
BsiHKAI	GWGCWC	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	573
BsiSI	CCGG	2 cut(s)	397, 574
BslFI	GGGAC	1 cut(s)	611
BsmAI	GTCTC	3 cut(s)	107, 680, 1201
BsmFI	GGGAC	1 cut(s)	611
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	1 cut(s)	1002
Bso31I	GGTCTC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	573
Bsp1286I	GDGCHC	2 cut(s)	28, 574
Bsp1407I	TGTACA	1 cut(s)	700
Bsp143I	GATC	2 cut(s)	540, 1075
Bsp1720I	GCTNAGC	1 cut(s)	1082
BspACI	CCGC	2 cut(s)	662, 1231
BspANI	GGCC	1 cut(s)	1002
BspCNI	CTCAG	3 cut(s)	502, 682, 1060
BspHI	TCATGA	1 cut(s)	1359
BspQI	GCTCTTC	1 cut(s)	1019
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	4 cut(s)	543, 581, 861, 1186
BsrGI	TGTACA	1 cut(s)	700
BsrI	ACTGG	6 cut(s)	85, 287, 694, 763, 903, 1133
BssECI	CCNNGG	2 cut(s)	475, 573
BssMI	GATC	2 cut(s)	540, 1075
BssT1I	CCWWGG	1 cut(s)	475
Bst2UI	CCWGG	1 cut(s)	1418
Bst4CI	ACNGT	3 cut(s)	146, 811, 1064
Bst6I	CTCTTC	2 cut(s)	559, 1019
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstAUI	TGTACA	1 cut(s)	700
BstBAI	YACGTR	2 cut(s)	488, 528
BstDEI	CTNAG	6 cut(s)	20, 510, 669, 1047, 1082, 1169
BstEII	GGTNACC	1 cut(s)	351
BstF5I	GGATG	6 cut(s)	583, 748, 916, 1198, 1233, 1330
BstHHI	GCGC	2 cut(s)	822, 1246
BstKTI	GATC	2 cut(s)	543, 1078
BstMAI	GTCTC	3 cut(s)	107, 680, 1201
BstMBI	GATC	2 cut(s)	540, 1075
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 136, 578, 893, 1051
BstNI	CCWGG	1 cut(s)	1418
BstNSI	RCATGY	2 cut(s)	604, 1179
BstPI	GGTNACC	1 cut(s)	351
BstSCI	CCNGG	4 cut(s)	395, 572, 573, 1416
BstSFI	CTRYAG	1 cut(s)	1254
BstSLI	GKGCMC	1 cut(s)	574
BstV1I	GCAGC	4 cut(s)	652, 962, 1066, 1212
BstV2I	GAAGAC	2 cut(s)	725, 1284
BsuRI	GGCC	1 cut(s)	1002
BtsCI	GGATG	6 cut(s)	583, 748, 916, 1198, 1233, 1330
BtsIMutI	CAGTG	2 cut(s)	896, 951
CciI	TCATGA	1 cut(s)	1359
CfoI	GCGC	2 cut(s)	822, 1246
Cfr13I	GGNCC	1 cut(s)	472
Cfr9I	CCCGGG	1 cut(s)	573
Csp6I	GTAC	4 cut(s)	362, 550, 701, 775
CviQI	GTAC	4 cut(s)	362, 550, 701, 775
DdeI	CTNAG	6 cut(s)	20, 510, 669, 1047, 1082, 1169
DpnI	GATC	2 cut(s)	542, 1077
DpnII	GATC	2 cut(s)	540, 1075
Eam1104I	CTCTTC	2 cut(s)	559, 1019
EarI	CTCTTC	2 cut(s)	559, 1019
Ecl136II	GAGCTC	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	475
Eco147I	AGGCCT	1 cut(s)	1002
Eco24I	GRGCYC	1 cut(s)	28
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	472
Eco53kI	GAGCTC	1 cut(s)	26
Eco57I	CTGAAG	2 cut(s)	312, 342
Eco88I	CYCGRG	1 cut(s)	573
Eco91I	GGTNACC	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	472
EcoO65I	GGTNACC	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	1416
EcoT14I	CCWWGG	1 cut(s)	475
EcoT22I	ATGCAT	1 cut(s)	583
EcoT38I	GRGCYC	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	475
FaqI	GGGAC	1 cut(s)	611
FauNDI	CATATG	1 cut(s)	1017
FbaI	TGATCA	1 cut(s)	540
Fnu4HI	GCNGC	5 cut(s)	663, 666, 976, 1055, 1226
FokI	GGATG	6 cut(s)	590, 755, 923, 1205, 1220, 1337
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	5 cut(s)	663, 666, 976, 1055, 1226
FspBI	CTAG	4 cut(s)	348, 462, 1386, 1404
GlaI	GCGC	2 cut(s)	821, 1245
GluI	GCNGC	5 cut(s)	663, 666, 976, 1055, 1226
GsuI	CTGGAG	1 cut(s)	920
HaeIII	GGCC	1 cut(s)	1002
HapII	CCGG	2 cut(s)	397, 574
HhaI	GCGC	2 cut(s)	822, 1246
Hin6I	GCGC	2 cut(s)	820, 1244
HinP1I	GCGC	2 cut(s)	820, 1244
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	298
HinfI	GANTC	3 cut(s)	260, 614, 1038
HpaII	CCGG	2 cut(s)	397, 574
HphI	GGTGA	3 cut(s)	634, 946, 1351
Hpy166II	GTNNAC	2 cut(s)	111, 701
Hpy188I	TCNGA	5 cut(s)	157, 292, 511, 736, 1050
Hpy188III	TCNNGA	4 cut(s)	596, 841, 985, 1360
Hpy8I	GTNNAC	2 cut(s)	111, 701
HpyAV	CCTTC	4 cut(s)	366, 992, 1204, 1348
HpyCH4III	ACNGT	3 cut(s)	146, 811, 1064
HpyCH4IV	ACGT	2 cut(s)	487, 527
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 136, 578, 893, 1051
HpyF3I	CTNAG	6 cut(s)	20, 510, 669, 1047, 1082, 1169
HpySE526I	ACGT	2 cut(s)	487, 527
HspAI	GCGC	2 cut(s)	820, 1244
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	2 cut(s)	540, 1075
LguI	GCTCTTC	1 cut(s)	1019
LmnI	GCTCC	3 cut(s)	338, 901, 1233
Lsp1109I	GCAGC	4 cut(s)	652, 962, 1066, 1212
LweI	GCATC	7 cut(s)	233, 568, 1041, 1135, 1242, 1249, 1315
MaeI	CTAG	4 cut(s)	348, 462, 1386, 1404
MaeII	ACGT	2 cut(s)	487, 527
MaeIII	GTNAC	5 cut(s)	351, 523, 946, 1039, 1123
MalI	GATC	2 cut(s)	542, 1077
MboI	GATC	2 cut(s)	540, 1075
MboII	GAAGA	4 cut(s)	546, 730, 1036, 1289
MfeI	CAATTG	1 cut(s)	65
MhlI	GDGCHC	2 cut(s)	28, 574
MluCI	AATT	3 cut(s)	65, 387, 940
MlyI	GAGTC	2 cut(s)	254, 1047
MmeI	TCCRAC	1 cut(s)	663
MnlI	CCTC	4 cut(s)	403, 1013, 1056, 1152
Mph1103I	ATGCAT	1 cut(s)	583
MseI	TTAA	2 cut(s)	806, 816
MslI	CAYNNNNRTG	7 cut(s)	144, 204, 431, 456, 708, 1101, 1191
MspA1I	CMGCKG	1 cut(s)	1240
MspI	CCGG	2 cut(s)	397, 574
MspR9I	CCNGG	4 cut(s)	397, 574, 575, 1418
MunI	CAATTG	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	1 cut(s)	1418
MwoI	GCNNNNNNNGC	5 cut(s)	10, 136, 578, 893, 1051
NciI	CCSGG	3 cut(s)	397, 574, 575
NdeI	CATATG	1 cut(s)	1017
NdeII	GATC	2 cut(s)	540, 1075
NmuCI	GTSAC	2 cut(s)	946, 1039
NsiI	ATGCAT	1 cut(s)	583
NspI	RCATGY	2 cut(s)	604, 1179
OliI	CACNNNNGTG	1 cut(s)	144
PaeI	GCATGC	1 cut(s)	1179
PagI	TCATGA	1 cut(s)	1359
PceI	AGGCCT	1 cut(s)	1002
PciI	ACATGT	1 cut(s)	600
PciSI	GCTCTTC	1 cut(s)	1019
PctI	GAATGC	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	614
PfoI	TCCNGGA	1 cut(s)	1416
PkrI	GCNGC	5 cut(s)	664, 667, 977, 1056, 1227
PleI	GAGTC	2 cut(s)	254, 1046
PpsI	GAGTC	2 cut(s)	254, 1046
Ppu21I	YACGTR	2 cut(s)	488, 528
PpuMI	RGGWCCY	1 cut(s)	472
PscI	ACATGT	1 cut(s)	600
Psp124BI	GAGCTC	1 cut(s)	28
Psp5II	RGGWCCY	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	1416
PspEI	GGTNACC	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	1416
PspPI	GGNCC	1 cut(s)	472
PspPPI	RGGWCCY	1 cut(s)	472
PvuII	CAGCTG	1 cut(s)	1240
RsaI	GTAC	4 cut(s)	363, 551, 702, 776
RsaNI	GTAC	4 cut(s)	362, 550, 701, 775
RseI	CAYNNNNRTG	7 cut(s)	144, 204, 431, 456, 708, 1101, 1191
SacI	GAGCTC	1 cut(s)	28
SapI	GCTCTTC	1 cut(s)	1019
SaqAI	TTAA	2 cut(s)	806, 816
SatI	GCNGC	5 cut(s)	663, 666, 976, 1055, 1226
Sau3AI	GATC	2 cut(s)	540, 1075
Sau96I	GGNCC	1 cut(s)	472
SchI	GAGTC	2 cut(s)	254, 1047
ScrFI	CCNGG	4 cut(s)	397, 574, 575, 1418
SduI	GDGCHC	2 cut(s)	28, 574
SfaNI	GCATC	7 cut(s)	233, 568, 1041, 1135, 1242, 1249, 1315
SfcI	CTRYAG	1 cut(s)	1254
SinI	GGWCC	1 cut(s)	472
SmaI	CCCGGG	1 cut(s)	575
SmiMI	CAYNNNNRTG	7 cut(s)	144, 204, 431, 456, 708, 1101, 1191
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SphI	GCATGC	1 cut(s)	1179
Sse9I	AATT	3 cut(s)	65, 387, 940
SseBI	AGGCCT	1 cut(s)	1002
SsiI	CCGC	2 cut(s)	662, 1231
SspMI	CTAG	4 cut(s)	348, 462, 1386, 1404
SstI	GAGCTC	1 cut(s)	28
StuI	AGGCCT	1 cut(s)	1002
StyD4I	CCNGG	4 cut(s)	395, 572, 573, 1416
StyI	CCWWGG	1 cut(s)	475
TaaI	ACNGT	3 cut(s)	146, 811, 1064
TaiI	ACGT	2 cut(s)	490, 530
TaqI	TCGA	4 cut(s)	498, 779, 1074, 1295
TasI	AATT	3 cut(s)	65, 387, 940
TatI	WGTACW	2 cut(s)	700, 774
TauI	GCSGC	1 cut(s)	665
TfiI	GAWTC	1 cut(s)	614
Tru1I	TTAA	2 cut(s)	806, 816
Tru9I	TTAA	2 cut(s)	806, 816
TscAI	CASTG	2 cut(s)	903, 951
TseFI	GTSAC	2 cut(s)	946, 1039
TseI	GCWGC	4 cut(s)	665, 975, 1054, 1225
Tsp45I	GTSAC	2 cut(s)	946, 1039
TspDTI	ATGAA	9 cut(s)	516, 839, 866, 932, 1011, 1037, 1119, 1175, 1367
TspMI	CCCGGG	1 cut(s)	573
TspRI	CASTG	2 cut(s)	903, 951
VpaK11BI	GGWCC	1 cut(s)	472
XapI	RAATTY	2 cut(s)	387, 940
XceI	RCATGY	2 cut(s)	604, 1179
XmaI	CCCGGG	1 cut(s)	573
XspI	CTAG	4 cut(s)	348, 462, 1386, 1404
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.