Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039775.1

Orthogroup ID

OG0016670

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1045

Gene Structure 1045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039775.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

gtgttcgatgaaatgactgagagaactagtgttacgtggaatgcaatgatcacggggtactcttcgcatagagaaagtgcccgggatgcatttctgttgtttcgggacatgttggattgtgattctggggtgaaacctactgatactactacggtttgtgttctcgccgcggcttctcagttgggtgtgctggaaactggtgcttgtgtacatggttatgtagagaaggcaatgcctgctcctgatggtgatgtttttatgggaactggtcttgttgatatgtactcgaaatgtggaagtgttgatagtgctttaaccatttttaagcgaatgaaacagagaaatgtcttgacttggacagcaatggcaaccgggctagctattcatggtaaggggagtgaagcactggaggttttggatgtaatgaaagctcatggaacaaacccaaatgaagtgactttcaccagcttgcttgcagcttgctgccatgtggggcttgttgaagaaggcctgcatttgttccatatgatgaagaccaagtttggagtcacccctcatatgcagcattacggttgcatggttgacctgcttagccgaagtgggcatttgaatgaggcctatgactttataatagcaatgccagttgaacctgatgctgtcttgtggaggagtttgctaagtgcatgcaaagttcatgggaatgtcgcaatgggagagaaggttgggaggaagctgcttcgcatccagctgacgcagagttctgcagatggaactccaaagagtgaagactatgtagctttgtcaaacatttatgcttatgccgaaaagtgggatgctgtggagatggtgagagaggagatgaaggtcatgggaattgaaaacaaagctggctctagttctgttcaaactactagcaatcatgccttggatgggttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

312

Amino Acids

33.97

Weight (kDa)

5.62

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18970
fragaria_vesca	FvH4_6g02930
malus_domestica	MD04G1224500.v1.1 MD12G1241200.v1.1
prunus_persica	Prupe.6G343200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0451131
rosa_laevigata	RLG00000025687
rosa_multiflora	Rmu_sc0039775.1_g000001 Rmu_ssc0000461.1_g000009
rosa_roxburghii	Rroxscaffold_6G00428600
rosa_rugosa	Rorug02G0631800
rosa_samantha	Rh3AG034600 Rh3DG034600
rosa_wichuraiana	Rw3G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	629
Acc36I	ACCTGC	1 cut(s)	594
AccII	CGCG	1 cut(s)	170
AciI	CCGC	2 cut(s)	168, 170
AfaI	GTAC	3 cut(s)	59, 210, 284
AfiI	CCNNNNNNNGG	2 cut(s)	828, 930
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	5 cut(s)	503, 610, 647, 878, 905
AhlI	ACTAGT	1 cut(s)	26
AluBI	AGCT	8 cut(s)	380, 431, 468, 479, 733, 748, 797, 887
AluI	AGCT	8 cut(s)	380, 431, 468, 479, 733, 748, 797, 887
Ama87I	CYCGRG	1 cut(s)	81
AoxI	GGCC	2 cut(s)	508, 615
ApeKI	GCWGC	4 cut(s)	476, 483, 562, 733
AsuC2I	CCSGG	3 cut(s)	82, 83, 373
AsuHPI	GGTGA	5 cut(s)	142, 260, 454, 541, 859
AsuNHI	GCTAGC	1 cut(s)	376
AvaI	CYCGRG	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	82
BbsI	GAAGAC	2 cut(s)	539, 792
BbvI	GCAGC	4 cut(s)	470, 488, 574, 720
BccI	CCATC	4 cut(s)	239, 761, 838, 923
BclI	TGATCA	1 cut(s)	48
BcnI	CCSGG	3 cut(s)	82, 83, 373
BcuI	ACTAGT	1 cut(s)	26
BfaI	CTAG	4 cut(s)	27, 377, 894, 912
BfmI	CTRYAG	1 cut(s)	762
BfuAI	ACCTGC	1 cut(s)	594
BisI	GCNGC	6 cut(s)	168, 171, 477, 484, 563, 734
BlpI	GCTNAGC	1 cut(s)	590
BlsI	GCNGC	6 cut(s)	169, 172, 478, 485, 564, 735
Bme1390I	CCNGG	3 cut(s)	82, 83, 373
BmeT110I	CYCGRG	1 cut(s)	81
BmrFI	CCNGG	3 cut(s)	82, 83, 373
BmsI	GCATC	4 cut(s)	76, 643, 750, 823
BmtI	GCTAGC	1 cut(s)	380
BpiI	GAAGAC	2 cut(s)	539, 792
BpmI	CTGGAG	1 cut(s)	428
Bpu1102I	GCTNAGC	1 cut(s)	590
BpuMI	CCSGG	3 cut(s)	82, 83, 373
BsaAI	YACGTR	1 cut(s)	36
BsaJI	CCNNGG	3 cut(s)	81, 168, 924
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	2 cut(s)	828, 930
Bse1I	ACTGG	4 cut(s)	202, 271, 411, 641
Bse3DI	GCAATG	5 cut(s)	51, 237, 369, 642, 714
BseDI	CCNNGG	3 cut(s)	81, 168, 924
BseGI	GGATG	5 cut(s)	91, 424, 741, 838, 934
BseLI	CCNNNNNNNGG	2 cut(s)	828, 930
BseMI	GCAATG	5 cut(s)	51, 237, 369, 642, 714
BseMII	CTCAG	2 cut(s)	9, 191
BseNI	ACTGG	4 cut(s)	202, 271, 411, 641
BseRI	GAGGAG	2 cut(s)	682, 869
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	4 cut(s)	470, 488, 574, 720
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	510, 617
BsiHKCI	CYCGRG	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	82, 372
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	2 cut(s)	828, 930
BsmFI	GGGAC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	510, 617
BsoBI	CYCGRG	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp1407I	TGTACA	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	48
Bsp1720I	GCTNAGC	1 cut(s)	590
BspACI	CCGC	2 cut(s)	168, 170
BspANI	GGCC	2 cut(s)	510, 617
BspCNI	CTCAG	2 cut(s)	10, 190
BspFNI	CGCG	1 cut(s)	170
BspMAI	CTGCAG	1 cut(s)	766
BspMI	ACCTGC	1 cut(s)	594
BspOI	GCTAGC	1 cut(s)	380
BsrDI	GCAATG	5 cut(s)	51, 237, 369, 642, 714
BsrGI	TGTACA	1 cut(s)	208
BsrI	ACTGG	4 cut(s)	202, 271, 411, 641
BssECI	CCNNGG	3 cut(s)	81, 168, 924
BssMI	GATC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	924
Bst4CI	ACNGT	2 cut(s)	154, 572
Bst6I	CTCTTC	1 cut(s)	67
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstAUI	TGTACA	1 cut(s)	208
BstBAI	YACGTR	1 cut(s)	36
BstC8I	GCNNGC	8 cut(s)	237, 378, 470, 474, 481, 512, 685, 889
BstDEI	CTNAG	4 cut(s)	18, 177, 590, 677
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	5 cut(s)	91, 424, 741, 838, 934
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 236
BstNSI	RCATGY	2 cut(s)	112, 687
BstSCI	CCNGG	3 cut(s)	80, 81, 371
BstSFI	CTRYAG	1 cut(s)	762
BstSLI	GKGCMC	1 cut(s)	82
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	4 cut(s)	470, 488, 574, 720
BstV2I	GAAGAC	2 cut(s)	539, 792
BsuRI	GGCC	2 cut(s)	510, 617
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	5 cut(s)	91, 424, 741, 838, 934
BtsIMutI	CAGTG	1 cut(s)	404
BveI	ACCTGC	1 cut(s)	594
Cac8I	GCNNGC	8 cut(s)	237, 378, 470, 474, 481, 512, 685, 889
Cfr42I	CCGCGG	1 cut(s)	171
Cfr9I	CCCGGG	1 cut(s)	81
CseI	GACGC	1 cut(s)	760
Csp6I	GTAC	3 cut(s)	58, 209, 283
CviQI	GTAC	3 cut(s)	58, 209, 283
DdeI	CTNAG	4 cut(s)	18, 177, 590, 677
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	924
Eco147I	AGGCCT	2 cut(s)	510, 617
Eco88I	CYCGRG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	924
EcoT22I	ATGCAT	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	924
FaqI	GGGAC	1 cut(s)	119
FauNDI	CATATG	2 cut(s)	525, 558
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	6 cut(s)	168, 171, 477, 484, 563, 734
FokI	GGATG	4 cut(s)	98, 431, 728, 845
Fsp4HI	GCNGC	6 cut(s)	168, 171, 477, 484, 563, 734
FspBI	CTAG	4 cut(s)	27, 377, 894, 912
GluI	GCNGC	6 cut(s)	168, 171, 477, 484, 563, 734
GsuI	CTGGAG	1 cut(s)	428
HaeIII	GGCC	2 cut(s)	510, 617
HapII	CCGG	2 cut(s)	82, 372
HgaI	GACGC	1 cut(s)	760
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	2 cut(s)	122, 546
HpaII	CCGG	2 cut(s)	82, 372
HphI	GGTGA	5 cut(s)	142, 260, 454, 541, 859
Hpy166II	GTNNAC	2 cut(s)	209, 583
Hpy188III	TCNNGA	3 cut(s)	104, 242, 349
Hpy8I	GTNNAC	2 cut(s)	209, 583
HpyAV	CCTTC	4 cut(s)	220, 500, 712, 856
HpyCH4III	ACNGT	2 cut(s)	154, 572
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	9 cut(s)	44, 89, 476, 514, 562, 576, 683, 687, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 236
HpyF3I	CTNAG	4 cut(s)	18, 177, 590, 677
HpySE526I	ACGT	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	48
KspI	CCGCGG	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	244
Lsp1109I	GCAGC	4 cut(s)	470, 488, 574, 720
LweI	GCATC	4 cut(s)	76, 643, 750, 823
MaeI	CTAG	4 cut(s)	27, 377, 894, 912
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	3 cut(s)	31, 454, 547
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	4 cut(s)	54, 515, 544, 797
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	1 cut(s)	873
MlyI	GAGTC	1 cut(s)	555
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	6 cut(s)	403, 564, 607, 660, 720, 847
Mph1103I	ATGCAT	1 cut(s)	91
MseI	TTAA	2 cut(s)	314, 324
MslI	CAYNNNNRTG	3 cut(s)	216, 609, 699
MspA1I	CMGCKG	2 cut(s)	170, 748
MspI	CCGG	2 cut(s)	82, 372
MspR9I	CCNGG	3 cut(s)	82, 83, 373
Mva1269I	GAATGC	1 cut(s)	46
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	86, 236
NciI	CCSGG	3 cut(s)	82, 83, 373
NdeI	CATATG	2 cut(s)	525, 558
NdeII	GATC	1 cut(s)	48
NheI	GCTAGC	1 cut(s)	376
NmuCI	GTSAC	2 cut(s)	454, 547
NsiI	ATGCAT	1 cut(s)	91
NspI	RCATGY	2 cut(s)	112, 687
PaeI	GCATGC	1 cut(s)	687
PceI	AGGCCT	2 cut(s)	510, 617
PciI	ACATGT	1 cut(s)	108
PctI	GAATGC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	6 cut(s)	169, 172, 478, 485, 564, 735
PleI	GAGTC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	554
Ppu21I	YACGTR	1 cut(s)	36
PscI	ACATGT	1 cut(s)	108
PsiI	TTATAA	1 cut(s)	629
PsrI	GAACNNNNNNTAC	2 cut(s)	16, 48
PstI	CTGCAG	1 cut(s)	766
PvuII	CAGCTG	1 cut(s)	748
RsaI	GTAC	3 cut(s)	59, 210, 284
RsaNI	GTAC	3 cut(s)	58, 209, 283
RseI	CAYNNNNRTG	3 cut(s)	216, 609, 699
SacII	CCGCGG	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	314, 324
SatI	GCNGC	6 cut(s)	168, 171, 477, 484, 563, 734
Sau3AI	GATC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	555
ScrFI	CCNGG	3 cut(s)	82, 83, 373
SduI	GDGCHC	1 cut(s)	82
SfaNI	GCATC	4 cut(s)	76, 643, 750, 823
SfcI	CTRYAG	1 cut(s)	762
Sfr303I	CCGCGG	1 cut(s)	171
SgrBI	CCGCGG	1 cut(s)	171
SmaI	CCCGGG	1 cut(s)	83
SmiMI	CAYNNNNRTG	3 cut(s)	216, 609, 699
SpeI	ACTAGT	1 cut(s)	26
SphI	GCATGC	1 cut(s)	687
Sse9I	AATT	1 cut(s)	873
SseBI	AGGCCT	2 cut(s)	510, 617
SsiI	CCGC	2 cut(s)	168, 170
SspMI	CTAG	4 cut(s)	27, 377, 894, 912
StuI	AGGCCT	2 cut(s)	510, 617
StyD4I	CCNGG	3 cut(s)	80, 81, 371
StyI	CCWWGG	1 cut(s)	924
TaaI	ACNGT	2 cut(s)	154, 572
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	6, 287
TasI	AATT	1 cut(s)	873
TatI	WGTACW	2 cut(s)	208, 282
TauI	GCSGC	2 cut(s)	170, 173
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	2 cut(s)	314, 324
Tru9I	TTAA	2 cut(s)	314, 324
TscAI	CASTG	1 cut(s)	411
TseFI	GTSAC	2 cut(s)	454, 547
TseI	GCWGC	4 cut(s)	476, 483, 562, 733
Tsp45I	GTSAC	2 cut(s)	454, 547
TspDTI	ATGAA	8 cut(s)	24, 347, 374, 440, 465, 545, 683, 875
TspMI	CCCGGG	1 cut(s)	81
TspRI	CASTG	1 cut(s)	411
XceI	RCATGY	2 cut(s)	112, 687
XmaI	CCCGGG	1 cut(s)	81
XspI	CTAG	4 cut(s)	27, 377, 894, 912
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.