Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016670

Physical Location & Seq

Genomic Coordinates Reverse (-)

29549319 .. 29550761

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G343200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGCACCATCTCCCAAGAGTCAGAGCTCTCTTTCTGCTAAACCTCAAGCTAAAATCCACCCACCAACTCAAACGAACCCATGCCCAGTTGATTACCAGTGGCCTCCTCAAATCGCCCACCCTTTATGCCAAACTAATTCAGCAATACGGTGCCTTATCAGACCCACAAAGCACCAACCTTTATGCCCATTTTGTATTCAAACACTTTGATGAGCCAAACTTATTCCTCTTAAACACTTTGATAAGATGTACTCAACCCAAAGACTCTATTCTTGTTTTTGCCAATTGGGTATCTAAAGCAACCTTAATTTTTGATGATTTTACCTACAAGTTTGTTCTTGGAGCTTGTGCTAGGTTGCCTTCAGTGTCAACATTATTAGTAGGCAGCCAAATACATGCCCGGATCATCAAACATGATGTCGTATCAAACATTTTGGTACAAACTACACTGGTACATTTTTATGCTAGTAATAAAGATTTTGTTTCTGCACGGAGAGTGTTTGATGAAATGGCTGTGAAAAATAGCGTTACGTGGAATGCAATGATCACGGGGTATTGTTCACAAAGAGAAAGTGCTCGTGATGCATTAGTGTTGTTTCGAGACATGTTGGATGATGTTTGTGGTGTGAAACCTACTGATACTACAATGGTTTGTGTTCTTTCTGCGGCTTCTCAGTTGGGTGTGTTGGAAACTGGTGCTTGTGTACATGGTTATATTGAGAAGGCAATATGGGTTCCTCATAATGATGTGTTTATAGGCACTGGTCTTGTTGGTATGTACTCAAAATGTGGATGTGTTGATGGTGCTCTGTCCATTTTTAAGCGAATGAAAGAGAAGAATATCTTGACTTGGACAGCAATGGCAACCGGGCTAGCCATTCATGGTAAGGGAAATGAAGCATTGGTGCTTTTGGATGTAATGGAGGCTTATGGAATAAAACCCAATGCAGTGACTTTTACCAGCTTGCTTTCGGCTTGTTGCCACTCGGGGCTTGTTGAAGAAGGCCTCCACTTGTTCCATATGATGAAGAGCAACTTTGATGTCATGCCTCAGATGCAACACTATGGTTGCATTGTTGACATGCTTAGCCGCAGAGGATACTTGAAAGAAGCCTATGAATTTGTAGTAGGGATGCCAGTTGAACCTGATGCCGTCTTGTGGAGGAGTTTGCTAAGTGCTTGCAAAGTTCATGGGGATGTTGCAATGGGCGAGAAGGTGGGGAAGAAGCTGCTCCACATACAGTCGGCGCAGACTTGTGCAGATTTGACTCTAAAGAGTGAGGACTATGTAGCTTTGTCGAACATTTATGCTTCTGCTGAAAGGTGGGAGGATGTGGAGATGGTAAGACAGGAAATGAAGGTTAAGGGAATTGAAAACAAAGCTGGTTGTAGTTCAATTCAAACTTCTTCAAACATTAGCAATCATGTCCTGGATGGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

481

Amino Acids

53.26

Weight (kDa)

8.12

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18970
fragaria_vesca	FvH4_6g02930
malus_domestica	MD04G1224500.v1.1 MD12G1241200.v1.1
prunus_persica	Prupe.6G343200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0451131
rosa_laevigata	RLG00000025687
rosa_multiflora	Rmu_sc0039775.1_g000001 Rmu_ssc0000461.1_g000009
rosa_roxburghii	Rroxscaffold_6G00428600
rosa_rugosa	Rorug02G0631800
rosa_samantha	Rh3AG034600 Rh3DG034600
rosa_wichuraiana	Rw3G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AciI	CCGC	2 cut(s)	665, 1090
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	1118
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	5 cut(s)	250, 438, 453, 705, 779
AfiI	CCNNNNNNNGG	1 cut(s)	1158
AflIII	ACRYGT	1 cut(s)	603
AgsI	TTSAA	8 cut(s)	199, 998, 1105, 1142, 1373, 1395, 1400, 1410
AjnI	CCWGG	1 cut(s)	1428
AluBI	AGCT	7 cut(s)	26, 49, 344, 963, 1228, 1292, 1382
AluI	AGCT	7 cut(s)	26, 49, 344, 963, 1228, 1292, 1382
Alw21I	GWGCWC	3 cut(s)	28, 577, 808
Alw26I	GTCTC	1 cut(s)	594
AlwI	GGATC	1 cut(s)	410
Ama87I	CYCGRG	1 cut(s)	985
AoxI	GGCC	2 cut(s)	100, 1003
ApeKI	GCWGC	2 cut(s)	384, 1228
ApoI	RAATTY	1 cut(s)	1118
ArsI	GACNNNNNNTTYG	2 cut(s)	402, 434
AspLEI	GCGC	1 cut(s)	1249
AsuC2I	CCSGG	2 cut(s)	400, 868
AsuNHI	GCTAGC	1 cut(s)	871
AvaI	CYCGRG	1 cut(s)	985
BanI	GGYRCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	576
Bbv12I	GWGCWC	3 cut(s)	28, 577, 808
BbvI	GCAGC	2 cut(s)	396, 1215
BccI	CCATC	4 cut(s)	15, 794, 1333, 1427
BceAI	ACGGC	1 cut(s)	1136
BciT130I	CCWGG	1 cut(s)	1430
BciVI	GTATCC	1 cut(s)	1091
BclI	TGATCA	1 cut(s)	543
BcnI	CCSGG	2 cut(s)	400, 868
BcoDI	GTCTC	1 cut(s)	594
BfaI	CTAG	3 cut(s)	351, 465, 872
BfuI	GTATCC	1 cut(s)	1091
BisI	GCNGC	4 cut(s)	385, 666, 1090, 1229
BlpI	GCTNAGC	1 cut(s)	1085
BlsI	GCNGC	4 cut(s)	386, 667, 1091, 1230
Bme1390I	CCNGG	3 cut(s)	400, 868, 1430
BmeT110I	CYCGRG	1 cut(s)	985
BmiI	GGNNCC	2 cut(s)	151, 735
BmrFI	CCNGG	3 cut(s)	400, 868, 1430
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	4 cut(s)	571, 1044, 1122, 1138
BmtI	GCTAGC	1 cut(s)	875
BmuI	ACTGGG	1 cut(s)	79
Bpu1102I	GCTNAGC	1 cut(s)	1085
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	2 cut(s)	400, 868
BsaAI	YACGTR	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	1 cut(s)	1158
Bse1I	ACTGG	6 cut(s)	85, 96, 453, 697, 766, 1136
Bse3DI	GCAATG	3 cut(s)	546, 864, 1209
BseBI	CCWGG	1 cut(s)	1430
BseGI	GGATG	7 cut(s)	616, 797, 919, 1137, 1201, 1336, 1438
BseLI	CCNNNNNNNGG	1 cut(s)	1158
BseMI	GCAATG	3 cut(s)	546, 864, 1209
BseMII	CTCAG	2 cut(s)	686, 1064
BseNI	ACTGG	6 cut(s)	85, 96, 453, 697, 766, 1136
BseRI	GAGGAG	2 cut(s)	95, 1177
BseXI	GCAGC	2 cut(s)	396, 1215
BsgI	GTGCAG	2 cut(s)	471, 1278
BshFI	GGCC	2 cut(s)	102, 1005
BshNI	GGYRCC	1 cut(s)	149
BsiHKAI	GWGCWC	3 cut(s)	28, 577, 808
BsiHKCI	CYCGRG	1 cut(s)	985
BsiSI	CCGG	2 cut(s)	400, 867
BslI	CCNNNNNNNGG	1 cut(s)	1158
BsmAI	GTCTC	1 cut(s)	594
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	2 cut(s)	102, 1005
BsoBI	CYCGRG	1 cut(s)	985
Bsp1286I	GDGCHC	3 cut(s)	28, 577, 808
Bsp1407I	TGTACA	1 cut(s)	703
Bsp143I	GATC	2 cut(s)	402, 543
Bsp1720I	GCTNAGC	1 cut(s)	1085
BspACI	CCGC	2 cut(s)	665, 1090
BspANI	GGCC	2 cut(s)	102, 1005
BspCNI	CTCAG	2 cut(s)	685, 1063
BspLI	GGNNCC	2 cut(s)	151, 735
BspOI	GCTAGC	1 cut(s)	875
BspPI	GGATC	1 cut(s)	410
BspQI	GCTCTTC	1 cut(s)	1022
BspT107I	GGYRCC	1 cut(s)	149
BsrDI	GCAATG	3 cut(s)	546, 864, 1209
BsrGI	TGTACA	1 cut(s)	703
BsrI	ACTGG	6 cut(s)	85, 96, 453, 697, 766, 1136
BssMI	GATC	2 cut(s)	402, 543
BssSI	CACGAG	1 cut(s)	576
Bst2BI	CACGAG	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	1430
Bst4CI	ACNGT	2 cut(s)	149, 1242
Bst6I	CTCTTC	1 cut(s)	1022
BstAUI	TGTACA	1 cut(s)	703
BstBAI	YACGTR	1 cut(s)	531
BstC8I	GCNNGC	3 cut(s)	873, 965, 1180
BstDEI	CTNAG	4 cut(s)	672, 1050, 1085, 1172
BstF5I	GGATG	7 cut(s)	616, 797, 919, 1137, 1201, 1336, 1438
BstHHI	GCGC	1 cut(s)	1249
BstKTI	GATC	2 cut(s)	405, 546
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	2 cut(s)	402, 543
BstMWI	GCNNNNNNNGC	2 cut(s)	581, 1054
BstNI	CCWGG	1 cut(s)	1430
BstNSI	RCATGY	3 cut(s)	398, 607, 1084
BstSCI	CCNGG	3 cut(s)	398, 866, 1428
BstV1I	GCAGC	2 cut(s)	396, 1215
BsuI	GTATCC	1 cut(s)	1091
BsuRI	GGCC	2 cut(s)	102, 1005
BtsCI	GGATG	7 cut(s)	616, 797, 919, 1137, 1201, 1336, 1438
BtsI	GCAGTG	1 cut(s)	954
BtsIMutI	CAGTG	5 cut(s)	103, 369, 446, 759, 954
Cac8I	GCNNGC	3 cut(s)	873, 965, 1180
CfoI	GCGC	1 cut(s)	1249
Csp6I	GTAC	5 cut(s)	249, 437, 452, 704, 778
CviQI	GTAC	5 cut(s)	249, 437, 452, 704, 778
DdeI	CTNAG	4 cut(s)	672, 1050, 1085, 1172
DpnI	GATC	2 cut(s)	404, 545
DpnII	GATC	2 cut(s)	402, 543
Eam1104I	CTCTTC	1 cut(s)	1022
EarI	CTCTTC	1 cut(s)	1022
Ecl136II	GAGCTC	1 cut(s)	26
Eco147I	AGGCCT	1 cut(s)	1005
Eco24I	GRGCYC	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	985
EcoICRI	GAGCTC	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	1428
EcoT22I	ATGCAT	1 cut(s)	586
EcoT38I	GRGCYC	1 cut(s)	28
FalI	AAGNNNNNCTT	4 cut(s)	827, 859, 1019, 1051
FauNDI	CATATG	1 cut(s)	1020
FbaI	TGATCA	1 cut(s)	543
Fnu4HI	GCNGC	4 cut(s)	385, 666, 1090, 1229
FokI	GGATG	6 cut(s)	623, 804, 926, 1144, 1208, 1343
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	4 cut(s)	385, 666, 1090, 1229
FspBI	CTAG	3 cut(s)	351, 465, 872
GlaI	GCGC	1 cut(s)	1248
GluI	GCNGC	4 cut(s)	385, 666, 1090, 1229
HaeIII	GGCC	2 cut(s)	102, 1005
HapII	CCGG	2 cut(s)	400, 867
HhaI	GCGC	1 cut(s)	1249
Hin6I	GCGC	1 cut(s)	1247
HinP1I	GCGC	1 cut(s)	1247
HincII	GTYRAC	2 cut(s)	369, 1078
HindII	GTYRAC	2 cut(s)	369, 1078
HinfI	GANTC	3 cut(s)	18, 263, 1267
HpaII	CCGG	2 cut(s)	400, 867
Hpy166II	GTNNAC	4 cut(s)	369, 560, 704, 1078
Hpy188I	TCNGA	3 cut(s)	23, 160, 1053
Hpy188III	TCNNGA	3 cut(s)	578, 599, 844
Hpy8I	GTNNAC	4 cut(s)	369, 560, 704, 1078
HpyAV	CCTTC	5 cut(s)	369, 715, 995, 1207, 1351
HpyCH4III	ACNGT	2 cut(s)	149, 1242
HpyCH4IV	ACGT	1 cut(s)	530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	581, 1054
HpyF3I	CTNAG	4 cut(s)	672, 1050, 1085, 1172
HpySE526I	ACGT	1 cut(s)	530
HspAI	GCGC	1 cut(s)	1247
Ksp22I	TGATCA	1 cut(s)	543
Kzo9I	GATC	2 cut(s)	402, 543
LguI	GCTCTTC	1 cut(s)	1022
LmnI	GCTCC	2 cut(s)	341, 1236
Lsp1109I	GCAGC	2 cut(s)	396, 1215
LweI	GCATC	4 cut(s)	571, 1044, 1122, 1138
MaeI	CTAG	3 cut(s)	351, 465, 872
MaeII	ACGT	1 cut(s)	530
MaeIII	GTNAC	2 cut(s)	526, 949
MalI	GATC	2 cut(s)	404, 545
MboI	GATC	2 cut(s)	402, 543
MboII	GAAGA	5 cut(s)	847, 1010, 1039, 1234, 1398
MfeI	CAATTG	1 cut(s)	283
MhlI	GDGCHC	3 cut(s)	28, 577, 808
MluCI	AATT	6 cut(s)	135, 283, 306, 1118, 1368, 1395
MlyI	GAGTC	3 cut(s)	27, 257, 1261
MmeI	TCCRAC	2 cut(s)	588, 666
Mph1103I	ATGCAT	1 cut(s)	586
MseI	TTAA	4 cut(s)	230, 305, 819, 1362
MslI	CAYNNNNRTG	4 cut(s)	207, 459, 744, 1194
MspI	CCGG	2 cut(s)	400, 867
MspR9I	CCNGG	3 cut(s)	400, 868, 1430
MunI	CAATTG	1 cut(s)	283
Mva1269I	GAATGC	1 cut(s)	541
MvaI	CCWGG	1 cut(s)	1430
MwoI	GCNNNNNNNGC	2 cut(s)	581, 1054
NciI	CCSGG	2 cut(s)	400, 868
NdeI	CATATG	1 cut(s)	1020
NdeII	GATC	2 cut(s)	402, 543
NheI	GCTAGC	1 cut(s)	871
NlaIV	GGNNCC	2 cut(s)	151, 735
NmuCI	GTSAC	1 cut(s)	949
NsiI	ATGCAT	1 cut(s)	586
NspI	RCATGY	3 cut(s)	398, 607, 1084
PceI	AGGCCT	1 cut(s)	1005
PciI	ACATGT	1 cut(s)	603
PciSI	GCTCTTC	1 cut(s)	1022
PctI	GAATGC	1 cut(s)	541
PfoI	TCCNGGA	1 cut(s)	1428
PkrI	GCNGC	4 cut(s)	386, 667, 1091, 1230
PleI	GAGTC	3 cut(s)	26, 257, 1261
PpsI	GAGTC	3 cut(s)	26, 257, 1261
Ppu21I	YACGTR	1 cut(s)	531
PscI	ACATGT	1 cut(s)	603
Psp124BI	GAGCTC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	1428
PspGI	CCWGG	1 cut(s)	1428
PspN4I	GGNNCC	2 cut(s)	151, 735
RsaI	GTAC	5 cut(s)	250, 438, 453, 705, 779
RsaNI	GTAC	5 cut(s)	249, 437, 452, 704, 778
RseI	CAYNNNNRTG	4 cut(s)	207, 459, 744, 1194
SacI	GAGCTC	1 cut(s)	28
SapI	GCTCTTC	1 cut(s)	1022
SaqAI	TTAA	4 cut(s)	230, 305, 819, 1362
SatI	GCNGC	4 cut(s)	385, 666, 1090, 1229
Sau3AI	GATC	2 cut(s)	402, 543
SchI	GAGTC	3 cut(s)	27, 257, 1261
ScrFI	CCNGG	3 cut(s)	400, 868, 1430
SduI	GDGCHC	3 cut(s)	28, 577, 808
SfaNI	GCATC	4 cut(s)	571, 1044, 1122, 1138
SmiMI	CAYNNNNRTG	4 cut(s)	207, 459, 744, 1194
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	6 cut(s)	135, 283, 306, 1118, 1368, 1395
SseBI	AGGCCT	1 cut(s)	1005
SsiI	CCGC	2 cut(s)	665, 1090
SspMI	CTAG	3 cut(s)	351, 465, 872
SstI	GAGCTC	1 cut(s)	28
StuI	AGGCCT	1 cut(s)	1005
StyD4I	CCNGG	3 cut(s)	398, 866, 1428
TaaI	ACNGT	2 cut(s)	149, 1242
TaiI	ACGT	1 cut(s)	533
TaqI	TCGA	2 cut(s)	598, 1298
TasI	AATT	6 cut(s)	135, 283, 306, 1118, 1368, 1395
TatI	WGTACW	3 cut(s)	248, 703, 777
TauI	GCSGC	2 cut(s)	668, 1092
Tru1I	TTAA	4 cut(s)	230, 305, 819, 1362
Tru9I	TTAA	4 cut(s)	230, 305, 819, 1362
TscAI	CASTG	5 cut(s)	103, 369, 453, 766, 954
TseFI	GTSAC	1 cut(s)	949
TseI	GCWGC	2 cut(s)	384, 1228
Tsp45I	GTSAC	1 cut(s)	949
TspDTI	ATGAA	8 cut(s)	519, 842, 869, 909, 1040, 1131, 1178, 1370
TspGWI	ACGGA	1 cut(s)	505
TspRI	CASTG	5 cut(s)	103, 369, 453, 766, 954
XapI	RAATTY	1 cut(s)	1118
XceI	RCATGY	3 cut(s)	398, 607, 1084
XspI	CTAG	3 cut(s)	351, 465, 872
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.