Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002134

Physical Location & Seq

Genomic Coordinates Reverse (-)

74656620 .. 74665439

Gene Structure 8820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0631800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCAGACGAACCCACCCCAGAACCCGGAACCAGCACCTCCTCCTCCGCCGTCAACGGCGGCAAGACCGTCAACGAATGCCAGGACATGATTCGGAGAAGCCTCCGAACTCCGATGGTGAAGTTTCTGCTGGAGCATCTGGAGAAATCTGGGTGTGGGATTGGGGACGGGTTCATCAAGGCCGTTCATTGCGAGAAGAAGATTGCCGGAGGATACACCCGAGGCGGAGGGATAATGGTGTGTAGTAATCACATGAACATGCAAGATGAGGTCAACCAAGTAGTGATACATGAGCTAATTCATGCTTTTGATGATTGTCGGGCTGCAAACTTGAACTGGGCTAATTGCGCTCATCATGCTTGTAGCGAGATTCGTGCTGGCCATCTTAGTGGTGATTGCCACTATAAACGTGAATTTTTGCGCGGTTTTATGAAGATTCGAGGCCATGAACAAGATTGCGTGAGACGGAGAGTTATGAAATCGGTCACTGCTAATCCCTACTGCTCAGAAGCAGCAGCAAAGGATGCCATGGAAGCTGTGTGGGATGTTTGTTACAATGATACGCAGCCCTTTGACAGAGCCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009977 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0017038 GO:0022804 GO:0022857 GO:0022884 GO:0031224 GO:0031360 GO:0031361 GO:0031976 GO:0031984 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

MttA_Hcf106

Protein Analysis

195

Amino Acids

21.62

Weight (kDa)

6.54

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	26 - 192	3.6e-61	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02590 AT4G02590 AT4G02590
fragaria_vesca	FvH4_2g22560 FvH4_2g22560 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900
malus_domestica	MD04G1224700.v1.1 MD05G1206200.v1.1 MD10G1193200.v1.1 MD12G1241500.v1.1
prunus_persica	Prupe.6G343400_v2.0.a1 Prupe.6G343400_v2.0.a1 Prupe.8G232600_v2.0.a1
pyrus_communis	pycom04g19790 pycom10g16690 pycom12g22100
rosa_chinensis	RchiOBHm_Chr3g0451111 RchiOBHm_Chr6g0289601
rosa_laevigata	RLG00000012289 RLG00000025689
rosa_multiflora	Rmu_sc0005376.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428580 Rroxscaffold_7G00177820
rosa_rugosa	Rorug02G0631400 Rorug02G0631500 Rorug02G0631600 Rorug02G0631700 Rorug02G0631800 Rorug06G0205100
rosa_samantha	Rh3AG034400 Rh3BG034700 Rh3CG033400 Rh3DG034400 Rh6AG316600 Rh6BG323000 Rh6CG329600 Rh6DG315000
rosa_wichuraiana	Rw3G002500 Rw6G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	423
AciI	CCGC	4 cut(s)	48, 60, 225, 423
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	334
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	2 cut(s)	295, 536
AluI	AGCT	2 cut(s)	295, 536
Alw26I	GTCTC	1 cut(s)	457
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	3 cut(s)	180, 379, 442
ApeKI	GCWGC	4 cut(s)	323, 512, 515, 565
ApoI	RAATTY	1 cut(s)	413
AspLEI	GCGC	2 cut(s)	350, 423
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	130, 404
AvaI	CYCGRG	1 cut(s)	219
BalI	TGGCCA	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	583
BbvI	GCAGC	4 cut(s)	310, 524, 527, 577
BccI	CCATC	2 cut(s)	109, 390
BceAI	ACGGC	3 cut(s)	35, 73, 167
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciT130I	CCWGG	1 cut(s)	83
BciVI	GTATCC	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	457
BfuI	GTATCC	1 cut(s)	206
BisI	GCNGC	5 cut(s)	61, 324, 513, 516, 566
BlsI	GCNGC	5 cut(s)	62, 325, 514, 517, 567
Bme1390I	CCNGG	2 cut(s)	27, 83
BmeT110I	CYCGRG	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	2 cut(s)	27, 83
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	2 cut(s)	145, 514
BmuI	ACTGGG	1 cut(s)	346
BpmI	CTGGAG	2 cut(s)	152, 161
BpuMI	CCSGG	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	220, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	220, 528
BseGI	GGATG	2 cut(s)	529, 550
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	2 cut(s)	31, 34
BseXI	GCAGC	4 cut(s)	310, 524, 527, 577
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	3 cut(s)	182, 381, 444
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	27, 207
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	457
BsmBI	CGTCTC	1 cut(s)	457
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	3 cut(s)	182, 381, 444
BsoBI	CYCGRG	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	4 cut(s)	48, 60, 225, 423
BspANI	GGCC	3 cut(s)	182, 381, 444
BspCNI	CTCAG	1 cut(s)	518
BspFNI	CGCG	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	2 cut(s)	220, 528
BssT1I	CCWWGG	1 cut(s)	528
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	2 cut(s)	386, 505
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	2 cut(s)	529, 550
BstFNI	CGCG	1 cut(s)	423
BstHHI	GCGC	2 cut(s)	350, 423
BstMAI	GTCTC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	4 cut(s)	347, 356, 524, 533
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	25, 81
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	4 cut(s)	310, 524, 527, 577
BstXI	CCANNNNNNTGG	1 cut(s)	389
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	3 cut(s)	182, 381, 444
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	2 cut(s)	529, 550
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	379
CfoI	GCGC	2 cut(s)	350, 423
CviAII	CATG	8 cut(s)	88, 253, 259, 290, 302, 356, 446, 529
DdeI	CTNAG	2 cut(s)	386, 505
EaeI	YGGCCR	1 cut(s)	379
EciI	GGCGGA	2 cut(s)	37, 240
Eco130I	CCWWGG	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	583
Eco88I	CYCGRG	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	528
Esp3I	CGTCTC	1 cut(s)	457
FaeI	CATG	8 cut(s)	91, 256, 262, 293, 305, 359, 449, 532
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	8 cut(s)	87, 252, 258, 289, 301, 355, 445, 528
Fnu4HI	GCNGC	5 cut(s)	61, 324, 513, 516, 566
FokI	GGATG	2 cut(s)	536, 557
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	5 cut(s)	61, 324, 513, 516, 566
GlaI	GCGC	2 cut(s)	349, 422
GluI	GCNGC	5 cut(s)	61, 324, 513, 516, 566
GsuI	CTGGAG	2 cut(s)	152, 161
HaeIII	GGCC	3 cut(s)	182, 381, 444
HapII	CCGG	2 cut(s)	27, 207
HhaI	GCGC	2 cut(s)	350, 423
Hin1II	CATG	8 cut(s)	91, 256, 262, 293, 305, 359, 449, 532
Hin6I	GCGC	2 cut(s)	348, 421
HinP1I	GCGC	2 cut(s)	348, 421
HincII	GTYRAC	3 cut(s)	55, 73, 274
HindII	GTYRAC	3 cut(s)	55, 73, 274
HinfI	GANTC	3 cut(s)	91, 370, 436
HpaII	CCGG	2 cut(s)	27, 207
HphI	GGTGA	2 cut(s)	130, 404
Hpy166II	GTNNAC	3 cut(s)	55, 73, 274
Hpy188I	TCNGA	4 cut(s)	96, 107, 114, 508
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	3 cut(s)	55, 73, 274
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	2 cut(s)	262, 326
HpyF10VI	GCNNNNNNNGC	4 cut(s)	347, 356, 524, 533
HpyF3I	CTNAG	2 cut(s)	386, 505
HpySE526I	ACGT	1 cut(s)	409
Hsp92II	CATG	8 cut(s)	91, 256, 262, 293, 305, 359, 449, 532
HspAI	GCGC	2 cut(s)	348, 421
LmnI	GCTCC	1 cut(s)	133
Lsp1109I	GCAGC	4 cut(s)	310, 524, 527, 577
LweI	GCATC	2 cut(s)	145, 514
MaeII	ACGT	1 cut(s)	409
MaeIII	GTNAC	2 cut(s)	484, 551
MboII	GAAGA	3 cut(s)	208, 211, 445
MhlI	GDGCHC	1 cut(s)	583
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	3 cut(s)	297, 343, 413
MluNI	TGGCCA	1 cut(s)	381
MnlI	CCTC	9 cut(s)	49, 52, 55, 113, 203, 215, 221, 262, 434
Mox20I	TGGCCA	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	381
MslI	CAYNNNNRTG	2 cut(s)	257, 387
Msp20I	TGGCCA	1 cut(s)	381
MspI	CCGG	2 cut(s)	27, 207
MspR9I	CCNGG	2 cut(s)	27, 83
Mva1269I	GAATGC	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	4 cut(s)	347, 356, 524, 533
NciI	CCSGG	1 cut(s)	27
NcoI	CCATGG	1 cut(s)	528
NlaIII	CATG	8 cut(s)	91, 256, 262, 293, 305, 359, 449, 532
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	484
NspI	RCATGY	1 cut(s)	262
PctI	GAATGC	1 cut(s)	83
PfeI	GAWTC	3 cut(s)	91, 370, 436
PkrI	GCNGC	5 cut(s)	62, 325, 514, 517, 567
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	31
RseI	CAYNNNNRTG	2 cut(s)	257, 387
SatI	GCNGC	5 cut(s)	61, 324, 513, 516, 566
ScrFI	CCNGG	2 cut(s)	27, 83
SduI	GDGCHC	1 cut(s)	583
SetI	ASST	5 cut(s)	41, 273, 297, 412, 538
SfaNI	GCATC	2 cut(s)	145, 514
SmiMI	CAYNNNNRTG	2 cut(s)	257, 387
Sse9I	AATT	3 cut(s)	297, 343, 413
SsiI	CCGC	4 cut(s)	48, 60, 225, 423
StyD4I	CCNGG	2 cut(s)	25, 81
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	412
TaqI	TCGA	1 cut(s)	439
TaqII	GACCGA	1 cut(s)	472
TasI	AATT	3 cut(s)	297, 343, 413
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	3 cut(s)	91, 370, 436
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	4 cut(s)	323, 512, 515, 565
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	7 cut(s)	163, 176, 269, 290, 446, 462, 491
TspGWI	ACGGA	1 cut(s)	481
TspRI	CASTG	1 cut(s)	493
XapI	RAATTY	1 cut(s)	413
XceI	RCATGY	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.