Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002134

Physical Location & Seq

Genomic Coordinates Reverse (-)

1137487 .. 1140540

Gene Structure 3054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02590.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCTAGTAACAACCCTCACGACAACCTTTCTGACCAAACTCCTTCTGATGATTTCTTCGAGCAAATCCTCGGCCTTCCTAACTTCTCAGCCTCTTCTGCCGCCGGTTTATCTGGAGTTGACGGAGGATTAGGTGGTGGAGCACCGCCTATGATGCTGCAGTTGGGTTCCGGAGAAGAAGGAAGTCACATGGGTGGCTTAGGAGGAAGTGGACCAACTGGGTTTCACAATCAGATGTTTCCTTTGGGGTTAAGTCTTGATCAAGGGAAAGGACCTGGGTTTCTTAGACCTGAAGGAGGACATGGAAGTGGGAAAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTGTTTTCCACGGGCAGCCTATGCAACAGCCACCTCCATCGGCCCCACATCAGCCTACTTCAATCCGTCCCAGGGTTCGAGCTAGGCGTGGTCAGGCTACTGATCCACATAGCATCGCTGAGCGGCTACGTAGAGAAAGAATAGCAGAACGGATCAGGGCGCTGCAGGAACTTGTACCTACTGTGAACAAGACCGATAGAGCTGCTATGATCGATGAGATTGTCGATTATGTAAAGTTTCTCAGGCTCCAAGTCAAGGTTTTGAGCATGAGCCGACTTGGTGGAGCCGGTGCGGTTGCTCCACTTGTTACTGATATGCCTCTTTCATCATCAGTTGAGGATGAAACGGGTGAGGGTGGAAGGACTCCGCAACCAGCGTGGGAGAAATGGTCTAACGATGGGACTGAACGTCAAGTGGCTAAACTGATGGAAGAGAACGTTGGAGCCGCGATGCAGCTTCTTCAATCAAAGGCTCTTTGTATGATGCCAATCTCATTGGCAATGGCAATTTACCATTCTCAACCTCCGGATACATCTTCAGTGGTCAAGCCTGAGAACAATCCTCCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

310

Amino Acids

33.11

Weight (kDa)

5.92

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	94 - 139	6.9e-07	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02590 AT4G02590 AT4G02590
fragaria_vesca	FvH4_2g22560 FvH4_2g22560 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900
malus_domestica	MD04G1224700.v1.1 MD05G1206200.v1.1 MD10G1193200.v1.1 MD12G1241500.v1.1
prunus_persica	Prupe.6G343400_v2.0.a1 Prupe.6G343400_v2.0.a1 Prupe.8G232600_v2.0.a1
pyrus_communis	pycom04g19790 pycom10g16690 pycom12g22100
rosa_chinensis	RchiOBHm_Chr3g0451111 RchiOBHm_Chr6g0289601
rosa_laevigata	RLG00000012289 RLG00000025689
rosa_multiflora	Rmu_sc0005376.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428580 Rroxscaffold_7G00177820
rosa_rugosa	Rorug02G0631400 Rorug02G0631500 Rorug02G0631600 Rorug02G0631700 Rorug02G0631800 Rorug06G0205100
rosa_samantha	Rh3AG034400 Rh3BG034700 Rh3CG033400 Rh3DG034400 Rh6AG316600 Rh6BG323000 Rh6CG329600 Rh6DG315000
rosa_wichuraiana	Rw3G002500 Rw6G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	484
AccII	CGCG	1 cut(s)	809
AccIII	TCCGGA	2 cut(s)	170, 886
AciI	CCGC	6 cut(s)	102, 146, 484, 653, 728, 807
AclI	AACGTT	1 cut(s)	798
AclWI	GGATC	2 cut(s)	458, 521
AcuI	CTGAAG	2 cut(s)	312, 882
AfaI	GTAC	1 cut(s)	537
AfiI	CCNNNNNNNGG	3 cut(s)	296, 433, 616
AgsI	TTSAA	2 cut(s)	423, 824
AhdI	GACNNNNNGTC	1 cut(s)	768
AjnI	CCWGG	2 cut(s)	274, 431
AjuI	GAANNNNNNNTTGG	2 cut(s)	783, 815
AleI	CACNNNNGTG	1 cut(s)	192
AluBI	AGCT	3 cut(s)	443, 563, 817
AluI	AGCT	3 cut(s)	443, 563, 817
Alw21I	GWGCWC	1 cut(s)	145
AlwI	GGATC	2 cut(s)	458, 521
Aor13HI	TCCGGA	2 cut(s)	170, 886
AoxI	GGCC	2 cut(s)	73, 402
ApeKI	GCWGC	5 cut(s)	157, 376, 523, 563, 814
Asp700I	GAANNNNTTC	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	523
AspS9I	GGNCC	3 cut(s)	212, 272, 403
AsuHPI	GGTGA	1 cut(s)	722
AvaII	GGWCC	2 cut(s)	212, 272
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	5 cut(s)	144, 388, 510, 550, 826
BccI	CCATC	3 cut(s)	406, 752, 781
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciT130I	CCWGG	2 cut(s)	276, 433
BciVI	GTATCC	1 cut(s)	883
BclI	TGATCA	1 cut(s)	259
BfaI	CTAG	2 cut(s)	6, 444
BfmI	CTRYAG	2 cut(s)	158, 524
BfoI	RGCGCY	1 cut(s)	524
BfuI	GTATCC	1 cut(s)	883
BisI	GCNGC	8 cut(s)	102, 158, 377, 485, 524, 564, 807, 815
BlpI	GCTNAGC	1 cut(s)	480
BlsI	GCNGC	8 cut(s)	103, 159, 378, 486, 525, 565, 808, 816
Bme1390I	CCNGG	2 cut(s)	276, 433
Bme18I	GGWCC	2 cut(s)	212, 272
BmeRI	GACNNNNNGTC	1 cut(s)	768
BmgT120I	GGNCC	3 cut(s)	212, 272, 403
BmiI	GGNNCC	5 cut(s)	169, 405, 608, 646, 805
BmrFI	CCNGG	2 cut(s)	276, 433
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	4 cut(s)	144, 483, 801, 834
BmuI	ACTGGG	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	199
Bpu1102I	GCTNAGC	1 cut(s)	480
Bsa29I	ATCGAT	2 cut(s)	343, 573
BsaAI	YACGTR	1 cut(s)	491
BsaBI	GATNNNNATC	1 cut(s)	848
BsaJI	CCNNGG	5 cut(s)	70, 275, 370, 431, 432
BsaWI	WCCGGW	2 cut(s)	170, 886
BsaXI	ACNNNNNCTCC	2 cut(s)	734, 764
Bsc4I	CCNNNNNNNGG	3 cut(s)	296, 433, 616
Bse118I	RCCGGY	2 cut(s)	104, 647
Bse1I	ACTGG	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	867
Bse8I	GATNNNNATC	1 cut(s)	848
BseAI	TCCGGA	2 cut(s)	170, 886
BseBI	CCWGG	2 cut(s)	276, 433
BseCI	ATCGAT	2 cut(s)	343, 573
BseDI	CCNNGG	5 cut(s)	70, 275, 370, 431, 432
BseGI	GGATG	1 cut(s)	706
BseJI	GATNNNNATC	1 cut(s)	848
BseLI	CCNNNNNNNGG	3 cut(s)	296, 433, 616
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	5 cut(s)	102, 336, 471, 616, 903
BseNI	ACTGG	1 cut(s)	223
BseXI	GCAGC	5 cut(s)	144, 388, 510, 550, 826
Bsh1236I	CGCG	1 cut(s)	809
BshFI	GGCC	2 cut(s)	75, 404
BshVI	ATCGAT	2 cut(s)	343, 573
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	4 cut(s)	105, 171, 648, 887
BslFI	GGGAC	2 cut(s)	414, 775
BslI	CCNNNNNNNGG	3 cut(s)	296, 433, 616
BsmFI	GGGAC	2 cut(s)	414, 775
BsnI	GGCC	2 cut(s)	75, 404
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp13I	TCCGGA	2 cut(s)	170, 886
Bsp143I	GATC	4 cut(s)	259, 463, 513, 570
Bsp1720I	GCTNAGC	1 cut(s)	480
BspACI	CCGC	6 cut(s)	102, 146, 484, 653, 728, 807
BspANI	GGCC	2 cut(s)	75, 404
BspCNI	CTCAG	5 cut(s)	101, 335, 472, 615, 904
BspDI	ATCGAT	2 cut(s)	343, 573
BspEI	TCCGGA	2 cut(s)	170, 886
BspFNI	CGCG	1 cut(s)	809
BspLI	GGNNCC	5 cut(s)	169, 405, 608, 646, 805
BspMAI	CTGCAG	2 cut(s)	162, 528
BspPI	GGATC	2 cut(s)	458, 521
BsrBI	CCGCTC	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	867
BsrFI	RCCGGY	2 cut(s)	104, 647
BsrI	ACTGG	1 cut(s)	223
BssAI	RCCGGY	2 cut(s)	104, 647
BssECI	CCNNGG	5 cut(s)	70, 275, 370, 431, 432
BssMI	GATC	4 cut(s)	259, 463, 513, 570
Bst2UI	CCWGG	2 cut(s)	276, 433
Bst4CI	ACNGT	2 cut(s)	544, 930
Bst6I	CTCTTC	2 cut(s)	100, 786
BstAPI	GCANNNNNTGC	1 cut(s)	382
BstBAI	YACGTR	1 cut(s)	491
BstDEI	CTNAG	7 cut(s)	88, 199, 284, 322, 480, 602, 912
BstDSI	CCRYGG	1 cut(s)	370
BstENI	CCTNNNNNAGG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	706
BstFNI	CGCG	1 cut(s)	809
BstH2I	RGCGCY	1 cut(s)	524
BstHHI	GCGC	1 cut(s)	523
BstKTI	GATC	4 cut(s)	262, 466, 516, 573
BstMBI	GATC	4 cut(s)	259, 463, 513, 570
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 154, 382
BstNI	CCWGG	2 cut(s)	276, 433
BstSCI	CCNGG	2 cut(s)	274, 431
BstSFI	CTRYAG	2 cut(s)	158, 524
BstSNI	TACGTA	1 cut(s)	491
BstUI	CGCG	1 cut(s)	809
BstV1I	GCAGC	5 cut(s)	144, 388, 510, 550, 826
Bsu15I	ATCGAT	2 cut(s)	343, 573
BsuI	GTATCC	1 cut(s)	883
BsuRI	GGCC	2 cut(s)	75, 404
BsuTUI	ATCGAT	2 cut(s)	343, 573
BtgI	CCRYGG	1 cut(s)	370
BtgZI	GCGATG	2 cut(s)	460, 824
BtsCI	GGATG	1 cut(s)	706
BtsIMutI	CAGTG	1 cut(s)	906
CfoI	GCGC	1 cut(s)	523
Cfr10I	RCCGGY	2 cut(s)	104, 647
Cfr13I	GGNCC	3 cut(s)	212, 272, 403
ClaI	ATCGAT	2 cut(s)	343, 573
Csp6I	GTAC	1 cut(s)	536
CspCI	CAANNNNNGTGG	2 cut(s)	719, 754
CviAII	CATG	3 cut(s)	190, 302, 628
CviQI	GTAC	1 cut(s)	536
DdeI	CTNAG	7 cut(s)	88, 199, 284, 322, 480, 602, 912
DpnI	GATC	4 cut(s)	261, 465, 515, 572
DpnII	GATC	4 cut(s)	259, 463, 513, 570
DriI	GACNNNNNGTC	1 cut(s)	768
Eam1104I	CTCTTC	2 cut(s)	100, 786
Eam1105I	GACNNNNNGTC	1 cut(s)	768
EarI	CTCTTC	2 cut(s)	100, 786
Eco105I	TACGTA	1 cut(s)	491
Eco47I	GGWCC	2 cut(s)	212, 272
Eco57I	CTGAAG	2 cut(s)	312, 882
EcoNI	CCTNNNNNAGG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	274, 431
FaeI	CATG	3 cut(s)	193, 305, 631
FaqI	GGGAC	2 cut(s)	414, 775
FatI	CATG	3 cut(s)	189, 301, 627
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	8 cut(s)	102, 158, 377, 485, 524, 564, 807, 815
FokI	GGATG	1 cut(s)	713
Fsp4HI	GCNGC	8 cut(s)	102, 158, 377, 485, 524, 564, 807, 815
FspBI	CTAG	2 cut(s)	6, 444
GlaI	GCGC	1 cut(s)	522
GluI	GCNGC	8 cut(s)	102, 158, 377, 485, 524, 564, 807, 815
GsuI	CTGGAG	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	524
HaeIII	GGCC	2 cut(s)	75, 404
HapII	CCGG	4 cut(s)	105, 171, 648, 887
HhaI	GCGC	1 cut(s)	523
Hin1II	CATG	3 cut(s)	193, 305, 631
Hin6I	GCGC	1 cut(s)	521
HinP1I	GCGC	1 cut(s)	521
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	318, 724
HpaII	CCGG	4 cut(s)	105, 171, 648, 887
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	3 cut(s)	121, 212, 547
Hpy188I	TCNGA	4 cut(s)	34, 49, 234, 325
Hpy188III	TCNNGA	5 cut(s)	20, 114, 171, 257, 887
Hpy8I	GTNNAC	3 cut(s)	121, 212, 547
HpyAV	CCTTC	5 cut(s)	54, 86, 173, 287, 714
HpyCH4III	ACNGT	2 cut(s)	544, 930
HpyCH4IV	ACGT	3 cut(s)	490, 769, 798
HpyCH4V	TGCA	4 cut(s)	160, 385, 526, 814
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 154, 382
HpyF3I	CTNAG	7 cut(s)	88, 199, 284, 322, 480, 602, 912
HpySE526I	ACGT	3 cut(s)	490, 769, 798
Hsp92II	CATG	3 cut(s)	193, 305, 631
HspAI	GCGC	1 cut(s)	521
Kpn2I	TCCGGA	2 cut(s)	170, 886
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	4 cut(s)	259, 463, 513, 570
LmnI	GCTCC	5 cut(s)	140, 612, 644, 664, 803
Lsp1109I	GCAGC	5 cut(s)	144, 388, 510, 550, 826
LweI	GCATC	4 cut(s)	144, 483, 801, 834
MaeI	CTAG	2 cut(s)	6, 444
MaeII	ACGT	3 cut(s)	490, 769, 798
MaeIII	GTNAC	3 cut(s)	8, 185, 667
MalI	GATC	4 cut(s)	261, 465, 515, 572
MbiI	CCGCTC	1 cut(s)	484
MboI	GATC	4 cut(s)	259, 463, 513, 570
MboII	GAAGA	7 cut(s)	49, 87, 188, 342, 803, 812, 888
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	1 cut(s)	867
MlyI	GAGTC	1 cut(s)	718
MmeI	TCCRAC	1 cut(s)	781
MroI	TCCGGA	2 cut(s)	170, 886
MroXI	GAANNNNTTC	1 cut(s)	317
MseI	TTAA	1 cut(s)	251
MslI	CAYNNNNRTG	2 cut(s)	192, 306
MspI	CCGG	4 cut(s)	105, 171, 648, 887
MspR9I	CCNGG	2 cut(s)	276, 433
MvaI	CCWGG	2 cut(s)	276, 433
MvnI	CGCG	1 cut(s)	809
MwoI	GCNNNNNNNGC	3 cut(s)	98, 154, 382
NdeII	GATC	4 cut(s)	259, 463, 513, 570
NlaIII	CATG	3 cut(s)	193, 305, 631
NlaIV	GGNNCC	5 cut(s)	169, 405, 608, 646, 805
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	185
OliI	CACNNNNGTG	1 cut(s)	192
PasI	CCCWGGG	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	1 cut(s)	445
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	318
PkrI	GCNGC	8 cut(s)	103, 159, 378, 486, 525, 565, 808, 816
PleI	GAGTC	1 cut(s)	718
PpsI	GAGTC	1 cut(s)	718
Ppu21I	YACGTR	1 cut(s)	491
PpuMI	RGGWCCY	1 cut(s)	272
Psp1406I	AACGTT	1 cut(s)	798
Psp5II	RGGWCCY	1 cut(s)	272
Psp6I	CCWGG	2 cut(s)	274, 431
PspGI	CCWGG	2 cut(s)	274, 431
PspN4I	GGNNCC	5 cut(s)	169, 405, 608, 646, 805
PspPI	GGNCC	3 cut(s)	212, 272, 403
PspPPI	RGGWCCY	1 cut(s)	272
PstI	CTGCAG	2 cut(s)	162, 528
RsaI	GTAC	1 cut(s)	537
RsaNI	GTAC	1 cut(s)	536
RseI	CAYNNNNRTG	2 cut(s)	192, 306
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	8 cut(s)	102, 158, 377, 485, 524, 564, 807, 815
Sau3AI	GATC	4 cut(s)	259, 463, 513, 570
Sau96I	GGNCC	3 cut(s)	212, 272, 403
SchI	GAGTC	1 cut(s)	718
ScrFI	CCNGG	2 cut(s)	276, 433
SduI	GDGCHC	1 cut(s)	145
SfaNI	GCATC	4 cut(s)	144, 483, 801, 834
SfcI	CTRYAG	2 cut(s)	158, 524
SinI	GGWCC	2 cut(s)	212, 272
SmiMI	CAYNNNNRTG	2 cut(s)	192, 306
SnaBI	TACGTA	1 cut(s)	491
Sse9I	AATT	1 cut(s)	867
SsiI	CCGC	6 cut(s)	102, 146, 484, 653, 728, 807
SspMI	CTAG	2 cut(s)	6, 444
StyD4I	CCNGG	2 cut(s)	274, 431
TaaI	ACNGT	2 cut(s)	544, 930
TaiI	ACGT	3 cut(s)	493, 772, 801
TaqI	TCGA	5 cut(s)	60, 343, 439, 573, 585
TaqII	GACCGA	1 cut(s)	569
TasI	AATT	1 cut(s)	867
TauI	GCSGC	3 cut(s)	104, 487, 809
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	1 cut(s)	906
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	5 cut(s)	157, 376, 523, 563, 814
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	3 cut(s)	371, 675, 717
TspGWI	ACGGA	3 cut(s)	138, 416, 526
TspRI	CASTG	1 cut(s)	906
VpaK11BI	GGWCC	2 cut(s)	212, 272
XagI	CCTNNNNNAGG	1 cut(s)	294
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	2 cut(s)	6, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.