Rorug02G0631700

Transcription factor UNE12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002134
Physical Location & Seq
Forward (+)
74634170 .. 74634828
659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0631700.1

Sequence Viewer

Length: 381 bp
ATGGTACGACCAAAGAAAGAGATCAAGATGGTACGTCCAGTACTTGTGTTTGCTCTCCTCTTTGTTGCCATTGTTGGGGTTACATCACAAGAAGAAGATGAAGCACCATCAAGTTCACCACCTTCCCCTCCATCCTTGTCGCCGTCGGAAGCCCCCACCGAAAGCGAAAGCGACAGCGACGCTTCCTCCCCATCCCCTTCTGGCAGTCACAATTCATCTCCGCCTTCCCCCGAAGACCACAGCGATGGTGATGGTGCCTCTGCCCCAGAAAGCAGCGACTCCGCTGATTCCCCTGAAGGCGAAGCCGAAGGACCAGATACAGATTTAGGAAGCGAAGAAGATTATCCCACTGATGATCTCTCCAGGCTCATCCAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

126

Amino Acids

12.99

Weight (kDa)

4.05

Isoelectric Point (pI)

107.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 254
AciI CCGC 2 cut(s) 221, 282
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 3 cut(s) 6, 33, 42
AfiI CCNNNNNNNGG 1 cut(s) 75
AjnI CCWGG 1 cut(s) 362
AluBI AGCT 1 cut(s) 378
AluI AGCT 1 cut(s) 378
ApeKI GCWGC 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 2 cut(s) 108, 260
AvaII GGWCC 1 cut(s) 311
BanI GGYRCC 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 285
BccI CCATC 6 cut(s) 22, 115, 139, 199, 239, 245
BceAI ACGGC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 364
BfaI CTAG 1 cut(s) 379
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
BmcAI AGTACT 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 364
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 364
BpiI GAAGAC 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 346
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 38
BseBI CCWGG 1 cut(s) 364
BseGI GGATG 3 cut(s) 131, 191, 369
BseLI CCNNNNNNNGG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 285
BshNI GGYRCC 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 75
Bsp143I GATC 2 cut(s) 21, 355
BspACI CCGC 2 cut(s) 221, 282
BspLI GGNNCC 1 cut(s) 256
BspT107I GGYRCC 1 cut(s) 254
BsrI ACTGG 1 cut(s) 38
BssMI GATC 2 cut(s) 21, 355
Bst2UI CCWGG 1 cut(s) 364
BstF5I GGATG 3 cut(s) 131, 191, 369
BstKTI GATC 2 cut(s) 24, 358
BstMBI GATC 2 cut(s) 21, 355
BstNI CCWGG 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 362
BstV1I GCAGC 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 240
BstXI CCANNNNNNTGG 1 cut(s) 245
BtgZI GCGATG 1 cut(s) 258
BtsCI GGATG 3 cut(s) 131, 191, 369
BtsIMutI CAGTG 1 cut(s) 348
Cfr13I GGNCC 1 cut(s) 311
CseI GACGC 1 cut(s) 188
Csp6I GTAC 3 cut(s) 5, 32, 41
CviJI RGCY 4 cut(s) 152, 305, 367, 378
CviKI_1 RGCY 4 cut(s) 152, 305, 367, 378
CviQI GTAC 3 cut(s) 5, 32, 41
DpnI GATC 2 cut(s) 23, 357
DpnII GATC 2 cut(s) 21, 355
EciI GGCGGA 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 362
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 3 cut(s) 118, 178, 356
Fsp4HI GCNGC 1 cut(s) 274
FspBI CTAG 1 cut(s) 379
GluI GCNGC 1 cut(s) 274
GsuI CTGGAG 1 cut(s) 346
HgaI GACGC 1 cut(s) 188
HinfI GANTC 2 cut(s) 278, 287
HphI GGTGA 2 cut(s) 108, 260
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 1 cut(s) 116
Hpy99I CGWCG 2 cut(s) 148, 182
HpyAV CCTTC 5 cut(s) 132, 207, 234, 290, 302
HpyCH4IV ACGT 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 34
Kzo9I GATC 2 cut(s) 21, 355
LpnPI CCDG 7 cut(s) 51, 186, 279, 306, 327, 349, 376
Lsp1109I GCAGC 1 cut(s) 285
MaeI CTAG 1 cut(s) 379
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 2 cut(s) 79, 206
MalI GATC 2 cut(s) 23, 357
MboI GATC 2 cut(s) 21, 355
MboII GAAGA 5 cut(s) 104, 107, 245, 347, 350
MluCI AATT 1 cut(s) 211
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 4 cut(s) 68, 138, 196, 268
MslI CAYNNNNRTG 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 364
MvaI CCWGG 1 cut(s) 364
NdeII GATC 2 cut(s) 21, 355
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 1 cut(s) 275
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 311
RsaI GTAC 3 cut(s) 6, 33, 42
RsaNI GTAC 3 cut(s) 5, 32, 41
RseI CAYNNNNRTG 1 cut(s) 243
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 2 cut(s) 21, 355
Sau96I GGNCC 1 cut(s) 311
ScaI AGTACT 1 cut(s) 42
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 364
SetI ASST 3 cut(s) 37, 124, 380
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 243
Sse9I AATT 1 cut(s) 211
SsiI CCGC 2 cut(s) 221, 282
SspMI CTAG 1 cut(s) 379
StyD4I CCNGG 1 cut(s) 362
TaiI ACGT 1 cut(s) 37
TasI AATT 1 cut(s) 211
TatI WGTACW 1 cut(s) 40
TfiI GAWTC 1 cut(s) 287
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 1 cut(s) 273
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 2 cut(s) 114, 204
TspRI CASTG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 311
XspI CTAG 1 cut(s) 379
ZrmI AGTACT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.