Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002134

Physical Location & Seq

Genomic Coordinates Reverse (-)

1638640 .. 1643110

Gene Structure 4471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g02900.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCGGGCAATCCGCCTGAGGGGCTCGGAGACGACTTCTTCGAGCAGATCATGGCTGTTCCTCAACCCTACAGCGGTGGCTCCGCCTCTGCTGCTGACTCGGGTCGTGGATATGGTGACGTGGGGTCCATGCCGATGGTGCTCCAGCTCGGGTCCGGAACCGGGTCTTCTTCCGGGTACAGAGGAGGAGGCGGGTCGGTTGGGATGGGTATGGGGATGCCTTTGGGTCTGAATTTGGAGCAGGGCTTTCTTGGACATGACAGGTTCCGAGATGAAGTGGAACGCAACTCCAACACTAACAACAGCAACAACAACAACAATGGTAACAGTTCCAGTTGGCAGGAGAGAGATAACTCGGTTCATATGACGACTAGTTTGTTTCCGGCGGCATTTGGACATTTGCAAAACCACTCCTCCGTCCGCCCAACGCCACCGCCGCCTCCTCAGCCTCACCAGCAGTTTCATAGCCAACCTGCACCAGCGCCAACTGCTGCTGTTCATCAACCTCCTGCTATCCGCCCAAGGGTCCGAGCAAGACGAGGCCAAGCAACAGATCCCCACAGTATTGCCGAGCGGTTACGTCGGGAAAGAATTGCAGAAAGAATGAAGGCTTTGCAGGAATTGGTACCTAGTTGTAACAAGACAGATAGGGCAGCTATGCTTGACGAAATCGTTGATTATGTGAAATTTCTAAGGCTCCAAGTAAAGGTTTTGAGCATGAGTAGACTTGGAGGAGCAGGTGCAGTGGCTCAGCTTGTAGCTGATGTACCCTTATCAGCAGTTGAGGGAGAGGGGATTGAAGGAGGGACCAATAATCAACAAGCATGGGAGAAGTGGTCAAATGATGGCACAGAGCAACAGGTAGCTAAGCTGATGGAAGAAGATGTTGGAGCTGCCATGCAATACCTTCAATCCAAGGCACTTTGCATCATGCCCATATCACTCGCCCCTGCGATTTTCAGGACACATCAGCCGGACACGACGACAATGGTTAAGCCGGAATCACACAACTCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

340

Amino Acids

36.37

Weight (kDa)

6.07

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	97 - 142	6.9e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	101 - 145	2.9e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02590 AT4G02590 AT4G02590
fragaria_vesca	FvH4_2g22560 FvH4_2g22560 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900
malus_domestica	MD04G1224700.v1.1 MD05G1206200.v1.1 MD10G1193200.v1.1 MD12G1241500.v1.1
prunus_persica	Prupe.6G343400_v2.0.a1 Prupe.6G343400_v2.0.a1 Prupe.8G232600_v2.0.a1
pyrus_communis	pycom04g19790 pycom10g16690 pycom12g22100
rosa_chinensis	RchiOBHm_Chr3g0451111 RchiOBHm_Chr6g0289601
rosa_laevigata	RLG00000012289 RLG00000025689
rosa_multiflora	Rmu_sc0005376.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428580 Rroxscaffold_7G00177820
rosa_rugosa	Rorug02G0631400 Rorug02G0631500 Rorug02G0631600 Rorug02G0631700 Rorug02G0631800 Rorug06G0205100
rosa_samantha	Rh3AG034400 Rh3BG034700 Rh3CG033400 Rh3DG034400 Rh6AG316600 Rh6BG323000 Rh6CG329600 Rh6DG315000
rosa_wichuraiana	Rw3G002500 Rw6G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	728
Acc36I	ACCTGC	2 cut(s)	481, 728
Acc65I	GGTACC	1 cut(s)	625
AccB1I	GGYRCC	1 cut(s)	625
AccBSI	CCGCTC	1 cut(s)	574
AccI	GTMKAC	1 cut(s)	724
AccIII	TCCGGA	1 cut(s)	155
AclWI	GGATC	1 cut(s)	548
AcsI	RAATTY	2 cut(s)	232, 686
AfaI	GTAC	3 cut(s)	179, 627, 768
AfiI	CCNNNNNNNGG	5 cut(s)	20, 74, 162, 523, 706
AgsI	TTSAA	2 cut(s)	800, 911
AhdI	GACNNNNNGTC	1 cut(s)	124
AhlI	ACTAGT	1 cut(s)	371
AjiI	CACGTC	1 cut(s)	121
AjuI	GAANNNNNNNTTGG	2 cut(s)	870, 902
AluBI	AGCT	7 cut(s)	148, 656, 754, 761, 866, 871, 893
AluI	AGCT	7 cut(s)	148, 656, 754, 761, 866, 871, 893
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	548
Ama87I	CYCGRG	2 cut(s)	100, 149
Aor13HI	TCCGGA	1 cut(s)	155
AoxI	GGCC	1 cut(s)	541
ApeKI	GCWGC	4 cut(s)	92, 491, 653, 893
ApoI	RAATTY	2 cut(s)	232, 686
ArsI	GACNNNNNNTTYG	4 cut(s)	23, 55, 358, 390
Asp718I	GGTACC	1 cut(s)	625
AspLEI	GCGC	1 cut(s)	484
AspS9I	GGNCC	4 cut(s)	126, 153, 526, 807
AsuC2I	CCSGG	2 cut(s)	163, 175
AsuHPI	GGTGA	2 cut(s)	128, 443
AvaI	CYCGRG	2 cut(s)	100, 149
AvaII	GGWCC	4 cut(s)	126, 153, 526, 807
AxyI	CCTNAGG	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	625
BanII	GRGCYC	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	444
BbvI	GCAGC	4 cut(s)	79, 478, 665, 880
BccI	CCATC	4 cut(s)	130, 199, 839, 868
BcnI	CCSGG	2 cut(s)	163, 175
BcoDI	GTCTC	1 cut(s)	24
BcuI	ACTAGT	1 cut(s)	371
BfaI	CTAG	3 cut(s)	372, 630, 1018
BfmI	CTRYAG	1 cut(s)	70
BfoI	RGCGCY	1 cut(s)	485
BfuAI	ACCTGC	2 cut(s)	481, 728
BglI	GCCNNNNNGGC	1 cut(s)	22
BisI	GCNGC	6 cut(s)	93, 387, 437, 492, 654, 894
BlpI	GCTNAGC	2 cut(s)	750, 867
BlsI	GCNGC	6 cut(s)	94, 388, 438, 493, 655, 895
Bme1390I	CCNGG	2 cut(s)	163, 175
Bme18I	GGWCC	4 cut(s)	126, 153, 526, 807
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmeT110I	CYCGRG	2 cut(s)	100, 149
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	4 cut(s)	126, 153, 526, 807
BmiI	GGNNCC	9 cut(s)	82, 127, 154, 160, 266, 527, 627, 698, 808
BmrFI	CCNGG	2 cut(s)	163, 175
BmsI	GCATC	2 cut(s)	207, 936
BoxI	GACNNNNGTC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	128
Bpu10I	CCTNAGC	1 cut(s)	444
Bpu1102I	GCTNAGC	2 cut(s)	750, 867
BpuMI	CCSGG	2 cut(s)	163, 175
BsaJI	CCNNGG	2 cut(s)	521, 915
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	4 cut(s)	398, 428, 821, 851
Bsc4I	CCNNNNNNNGG	5 cut(s)	20, 74, 162, 523, 706
Bse1I	ACTGG	1 cut(s)	333
Bse21I	CCTNAGG	1 cut(s)	18
BseAI	TCCGGA	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	521, 915
BseGI	GGATG	2 cut(s)	210, 222
BseLI	CCNNNNNNNGG	5 cut(s)	20, 74, 162, 523, 706
BseMII	CTCAG	3 cut(s)	9, 458, 764
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	5 cut(s)	198, 201, 403, 432, 747
BseXI	GCAGC	4 cut(s)	79, 478, 665, 880
BsgI	GTGCAG	2 cut(s)	459, 762
BshFI	GGCC	1 cut(s)	543
BshNI	GGYRCC	1 cut(s)	625
BsiHKAI	GWGCWC	1 cut(s)	144
BsiHKCI	CYCGRG	2 cut(s)	100, 149
BsiSI	CCGG	6 cut(s)	156, 162, 174, 383, 974, 998
BslFI	GGGAC	1 cut(s)	820
BslI	CCNNNNNNNGG	5 cut(s)	20, 74, 162, 523, 706
BsmAI	GTCTC	1 cut(s)	24
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	820
BsnI	GGCC	1 cut(s)	543
BsoBI	CYCGRG	2 cut(s)	100, 149
Bsp1286I	GDGCHC	2 cut(s)	27, 144
Bsp13I	TCCGGA	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	48, 553
Bsp1720I	GCTNAGC	2 cut(s)	750, 867
BspANI	GGCC	1 cut(s)	543
BspCNI	CTCAG	3 cut(s)	10, 457, 763
BspEI	TCCGGA	1 cut(s)	155
BspLI	GGNNCC	9 cut(s)	82, 127, 154, 160, 266, 527, 627, 698, 808
BspMI	ACCTGC	2 cut(s)	481, 728
BspPI	GGATC	1 cut(s)	548
BspT107I	GGYRCC	1 cut(s)	625
BsrBI	CCGCTC	1 cut(s)	574
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	2 cut(s)	521, 915
BssMI	GATC	2 cut(s)	48, 553
BssT1I	CCWWGG	2 cut(s)	521, 915
Bst4CI	ACNGT	2 cut(s)	329, 563
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	5 cut(s)	18, 444, 692, 750, 867
BstF5I	GGATG	2 cut(s)	210, 222
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	1 cut(s)	484
BstKTI	GATC	2 cut(s)	51, 556
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	48, 553
BstMWI	GCNNNNNNNGC	7 cut(s)	22, 92, 139, 436, 445, 454, 488
BstPAI	GACNNNNGTC	1 cut(s)	102
BstSCI	CCNGG	2 cut(s)	161, 173
BstSFI	CTRYAG	1 cut(s)	70
BstV1I	GCAGC	4 cut(s)	79, 478, 665, 880
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	553
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	553
Bsu36I	CCTNAGG	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	543
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	210, 222
BtsI	GCAGTG	1 cut(s)	750
BtsIMutI	CAGTG	1 cut(s)	750
BveI	ACCTGC	2 cut(s)	481, 728
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	484
Cfr13I	GGNCC	4 cut(s)	126, 153, 526, 807
Csp6I	GTAC	3 cut(s)	178, 626, 767
CviAII	CATG	7 cut(s)	52, 130, 257, 718, 825, 898, 931
CviQI	GTAC	3 cut(s)	178, 626, 767
DdeI	CTNAG	5 cut(s)	18, 444, 692, 750, 867
DpnI	GATC	2 cut(s)	50, 555
DpnII	GATC	2 cut(s)	48, 553
DriI	GACNNNNNGTC	1 cut(s)	124
Eam1105I	GACNNNNNGTC	1 cut(s)	124
EciI	GGCGGA	3 cut(s)	73, 410, 506
Eco130I	CCWWGG	2 cut(s)	521, 915
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	4 cut(s)	126, 153, 526, 807
Eco81I	CCTNAGG	1 cut(s)	18
Eco88I	CYCGRG	2 cut(s)	100, 149
EcoT14I	CCWWGG	2 cut(s)	521, 915
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	2 cut(s)	521, 915
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	7 cut(s)	55, 133, 260, 721, 828, 901, 934
FaqI	GGGAC	1 cut(s)	820
FatI	CATG	7 cut(s)	51, 129, 256, 717, 824, 897, 930
FauI	CCCGC	1 cut(s)	185
FauNDI	CATATG	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	724
Fnu4HI	GCNGC	6 cut(s)	93, 387, 437, 492, 654, 894
FokI	GGATG	2 cut(s)	217, 229
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	6 cut(s)	93, 387, 437, 492, 654, 894
FspBI	CTAG	3 cut(s)	372, 630, 1018
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	6 cut(s)	93, 387, 437, 492, 654, 894
GsuI	CTGGAG	1 cut(s)	128
HaeII	RGCGCY	1 cut(s)	485
HaeIII	GGCC	1 cut(s)	543
HapII	CCGG	6 cut(s)	156, 162, 174, 383, 974, 998
HhaI	GCGC	1 cut(s)	484
Hin1II	CATG	7 cut(s)	55, 133, 260, 721, 828, 901, 934
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HinfI	GANTC	2 cut(s)	98, 1001
HpaII	CCGG	6 cut(s)	156, 162, 174, 383, 974, 998
HphI	GGTGA	2 cut(s)	128, 443
Hpy166II	GTNNAC	1 cut(s)	725
Hpy188I	TCNGA	4 cut(s)	29, 231, 269, 530
Hpy188III	TCNNGA	3 cut(s)	156, 584, 961
Hpy8I	GTNNAC	1 cut(s)	725
Hpy99I	CGWCG	2 cut(s)	585, 985
HpyAV	CCTTC	3 cut(s)	601, 794, 917
HpyCH4III	ACNGT	2 cut(s)	329, 563
HpyCH4IV	ACGT	2 cut(s)	120, 580
HpyCH4V	TGCA	7 cut(s)	403, 476, 596, 616, 743, 901, 927
HpyF10VI	GCNNNNNNNGC	7 cut(s)	22, 92, 139, 436, 445, 454, 488
HpyF3I	CTNAG	5 cut(s)	18, 444, 692, 750, 867
HpySE526I	ACGT	2 cut(s)	120, 580
Hsp92II	CATG	7 cut(s)	55, 133, 260, 721, 828, 901, 934
HspAI	GCGC	1 cut(s)	482
Kpn2I	TCCGGA	1 cut(s)	155
KpnI	GGTACC	1 cut(s)	629
Kzo9I	GATC	2 cut(s)	48, 553
LmnI	GCTCC	6 cut(s)	86, 147, 238, 702, 734, 890
Lsp1109I	GCAGC	4 cut(s)	79, 478, 665, 880
LweI	GCATC	2 cut(s)	207, 936
MaeI	CTAG	3 cut(s)	372, 630, 1018
MaeII	ACGT	2 cut(s)	120, 580
MaeIII	GTNAC	4 cut(s)	116, 323, 576, 635
MalI	GATC	2 cut(s)	50, 555
MbiI	CCGCTC	1 cut(s)	574
MboI	GATC	2 cut(s)	48, 553
MboII	GAAGA	6 cut(s)	31, 159, 162, 890, 893, 1005
MflI	RGATCY	1 cut(s)	553
MhlI	GDGCHC	2 cut(s)	27, 144
MluCI	AATT	4 cut(s)	232, 591, 620, 686
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	315, 868
MroI	TCCGGA	1 cut(s)	155
MseI	TTAA	1 cut(s)	993
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	75
MspI	CCGG	6 cut(s)	156, 162, 174, 383, 974, 998
MspR9I	CCNGG	2 cut(s)	163, 175
MwoI	GCNNNNNNNGC	7 cut(s)	22, 92, 139, 436, 445, 454, 488
NciI	CCSGG	2 cut(s)	163, 175
NdeI	CATATG	1 cut(s)	363
NdeII	GATC	2 cut(s)	48, 553
NlaIII	CATG	7 cut(s)	55, 133, 260, 721, 828, 901, 934
NlaIV	GGNNCC	9 cut(s)	82, 127, 154, 160, 266, 527, 627, 698, 808
NmeAIII	GCCGAG	1 cut(s)	595
NmuCI	GTSAC	1 cut(s)	116
PaqCI	CACCTGC	1 cut(s)	728
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	1001
PkrI	GCNGC	6 cut(s)	94, 388, 438, 493, 655, 895
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PshAI	GACNNNNGTC	1 cut(s)	102
PspN4I	GGNNCC	9 cut(s)	82, 127, 154, 160, 266, 527, 627, 698, 808
PspPI	GGNCC	4 cut(s)	126, 153, 526, 807
PsuI	RGATCY	1 cut(s)	553
RsaI	GTAC	3 cut(s)	179, 627, 768
RsaNI	GTAC	3 cut(s)	178, 626, 767
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	993
SatI	GCNGC	6 cut(s)	93, 387, 437, 492, 654, 894
Sau3AI	GATC	2 cut(s)	48, 553
Sau96I	GGNCC	4 cut(s)	126, 153, 526, 807
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	163, 175
SduI	GDGCHC	2 cut(s)	27, 144
SfaNI	GCATC	2 cut(s)	207, 936
SfcI	CTRYAG	1 cut(s)	70
SinI	GGWCC	4 cut(s)	126, 153, 526, 807
SmiMI	CAYNNNNRTG	1 cut(s)	134
SpeI	ACTAGT	1 cut(s)	371
Sse9I	AATT	4 cut(s)	232, 591, 620, 686
SspMI	CTAG	3 cut(s)	372, 630, 1018
StyD4I	CCNGG	2 cut(s)	161, 173
StyI	CCWWGG	2 cut(s)	521, 915
TaaI	ACNGT	2 cut(s)	329, 563
TaiI	ACGT	2 cut(s)	123, 583
TaqI	TCGA	1 cut(s)	42
TasI	AATT	4 cut(s)	232, 591, 620, 686
TauI	GCSGC	2 cut(s)	389, 439
TfiI	GAWTC	1 cut(s)	1001
Tru1I	TTAA	1 cut(s)	993
Tru9I	TTAA	1 cut(s)	993
TscAI	CASTG	1 cut(s)	750
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	4 cut(s)	92, 491, 653, 893
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	5 cut(s)	288, 350, 452, 488, 620
TspGWI	ACGGA	1 cut(s)	406
TspRI	CASTG	1 cut(s)	750
VpaK11BI	GGWCC	4 cut(s)	126, 153, 526, 807
XapI	RAATTY	2 cut(s)	232, 686
XmiI	GTMKAC	1 cut(s)	724
XspI	CTAG	3 cut(s)	372, 630, 1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.