Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002134

Physical Location & Seq

Genomic Coordinates Reverse (-)

2291799 .. 2296777

Gene Structure 4979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG034700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCGGGCAATCCGCCTGAGGGACTCGGAGACGATTTCTTCGAGCAGATCATGGCCGTTCCTCAAACGTACAGCGGCTCCGGCTCTGCTGCTGAGTCAGCTGGTGGTGGCTATGGAGACGTGGGGTCCATGCCCATGGTGCTCCAGCTGGGCTCCGGAACCGGGTCTTCTTCTGGCTCCGGCGTCGGGTACAGAGGAGGAGTCGGGTCGGTTGGGATGGGTATGGGCTTGCCTTTGGGTCTGAATTTGGAGCAGGGGTTTCTTGGACAAGACAGGTTCAGAGATGAAGTTGAACCCAACTCTAACACCAACAACAACAACAACAACGGTAACAGTTCTAATGAAAGAGATTCGGTTCACATGACGAGTTTGTTTCCGGCATTTGGACATTTGCAAAACCACTCTGTCCGGCCAACGCCGCCGCCTCCTCAGCCTCACCAGCAGTTTCATAGCCAACCAGCACCGGGGCCAGCTGCTGCTGCCCATCACCCTCCTGCTATCCGCCCAAGGGTCCGAGCAAGACGAGGTCAAGCAACAGATCCCCACAGTATTGCCGAGCGGTTACGCCGGGAAAGAATTGCAGAAAGAATGAAGGCTTTGCAGGAATTGGTACCTAGTTGTAACAAGACAGATAGGGCAGCTATGCTTGACGAAATCGTCGATTATGTGAAATTTTTAAGGCTCCAAGTAAAGGTATGCTTATTCAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

237

Amino Acids

25.32

Weight (kDa)

7.1

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	182 - 227	6.4e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	186 - 232	2.8e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02590 AT4G02590 AT4G02590
fragaria_vesca	FvH4_2g22560 FvH4_2g22560 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900
malus_domestica	MD04G1224700.v1.1 MD05G1206200.v1.1 MD10G1193200.v1.1 MD12G1241500.v1.1
prunus_persica	Prupe.6G343400_v2.0.a1 Prupe.6G343400_v2.0.a1 Prupe.8G232600_v2.0.a1
pyrus_communis	pycom04g19790 pycom10g16690 pycom12g22100
rosa_chinensis	RchiOBHm_Chr3g0451111 RchiOBHm_Chr6g0289601
rosa_laevigata	RLG00000012289 RLG00000025689
rosa_multiflora	Rmu_sc0005376.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428580 Rroxscaffold_7G00177820
rosa_rugosa	Rorug02G0631400 Rorug02G0631500 Rorug02G0631600 Rorug02G0631700 Rorug02G0631800 Rorug06G0205100
rosa_samantha	Rh3AG034400 Rh3BG034700 Rh3CG033400 Rh3DG034400 Rh6AG316600 Rh6BG323000 Rh6CG329600 Rh6DG315000
rosa_wichuraiana	Rw3G002500 Rw6G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	656
Acc65I	GGTACC	1 cut(s)	610
AccB1I	GGYRCC	1 cut(s)	610
AccBSI	CCGCTC	1 cut(s)	559
AccIII	TCCGGA	1 cut(s)	155
AciI	CCGC	7 cut(s)	5, 14, 75, 419, 422, 502, 559
AclWI	GGATC	1 cut(s)	533
AcoI	YGGCCR	2 cut(s)	54, 410
AcsI	RAATTY	3 cut(s)	244, 671, 708
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	3 cut(s)	71, 191, 612
AfiI	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 383, 464, 508, 691
AgsI	TTSAA	2 cut(s)	293, 706
AhdI	GACNNNNNGTC	1 cut(s)	124
AjiI	CACGTC	1 cut(s)	121
AluBI	AGCT	4 cut(s)	101, 148, 473, 641
AluI	AGCT	4 cut(s)	101, 148, 473, 641
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	24, 111
AlwI	GGATC	1 cut(s)	533
AlwNI	CAGNNNCTG	1 cut(s)	476
Aor13HI	TCCGGA	1 cut(s)	155
AoxI	GGCC	3 cut(s)	54, 410, 467
ApeKI	GCWGC	5 cut(s)	89, 473, 476, 479, 638
ApoI	RAATTY	3 cut(s)	244, 671, 708
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
Asp718I	GGTACC	1 cut(s)	610
AspS9I	GGNCC	3 cut(s)	126, 467, 511
AsuC2I	CCSGG	3 cut(s)	163, 465, 569
AsuHPI	GGTGA	2 cut(s)	428, 479
AvaII	GGWCC	2 cut(s)	126, 511
AxyI	CCTNAGG	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	610
BanII	GRGCYC	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	5 cut(s)	76, 460, 463, 466, 650
BccI	CCATC	2 cut(s)	211, 492
BceAI	ACGGC	1 cut(s)	41
BcnI	CCSGG	3 cut(s)	163, 465, 569
BcoDI	GTCTC	2 cut(s)	24, 111
BfaI	CTAG	1 cut(s)	615
BisI	GCNGC	8 cut(s)	76, 90, 419, 422, 474, 477, 480, 639
BlsI	GCNGC	8 cut(s)	77, 91, 420, 423, 475, 478, 481, 640
Bme1390I	CCNGG	3 cut(s)	163, 465, 569
Bme18I	GGWCC	2 cut(s)	126, 511
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	3 cut(s)	126, 467, 511
BmiI	GGNNCC	9 cut(s)	79, 127, 154, 160, 178, 468, 512, 612, 683
BmrFI	CCNGG	3 cut(s)	163, 465, 569
BpiI	GAAGAC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	128
Bpu10I	CCTNAGC	1 cut(s)	429
BpuMI	CCSGG	3 cut(s)	163, 465, 569
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	3 cut(s)	135, 464, 506
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 242, 272
Bsc4I	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 383, 464, 508, 691
Bse21I	CCTNAGG	1 cut(s)	18
BseAI	TCCGGA	1 cut(s)	155
BseDI	CCNNGG	3 cut(s)	135, 464, 506
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 383, 464, 508, 691
BseMII	CTCAG	3 cut(s)	9, 84, 443
BseRI	GAGGAG	3 cut(s)	210, 213, 417
BseXI	GCAGC	5 cut(s)	76, 460, 463, 466, 650
BseYI	CCCAGC	1 cut(s)	148
BshFI	GGCC	3 cut(s)	56, 412, 469
BshNI	GGYRCC	1 cut(s)	610
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	8 cut(s)	81, 156, 162, 180, 377, 409, 464, 568
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 383, 464, 508, 691
BsmAI	GTCTC	2 cut(s)	24, 111
BsmBI	CGTCTC	2 cut(s)	24, 111
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	3 cut(s)	56, 412, 469
Bsp1286I	GDGCHC	2 cut(s)	144, 155
Bsp13I	TCCGGA	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	48, 538
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	7 cut(s)	5, 14, 75, 419, 422, 502, 559
BspANI	GGCC	3 cut(s)	56, 412, 469
BspCNI	CTCAG	3 cut(s)	10, 85, 442
BspEI	TCCGGA	1 cut(s)	155
BspLI	GGNNCC	9 cut(s)	79, 127, 154, 160, 178, 468, 512, 612, 683
BspPI	GGATC	1 cut(s)	533
BspT107I	GGYRCC	1 cut(s)	610
BsrBI	CCGCTC	1 cut(s)	559
BssECI	CCNNGG	3 cut(s)	135, 464, 506
BssMI	GATC	2 cut(s)	48, 538
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	2 cut(s)	135, 506
Bst4CI	ACNGT	3 cut(s)	329, 335, 548
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	3 cut(s)	7, 230, 471
BstDEI	CTNAG	3 cut(s)	18, 93, 429
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	51, 541
BstMAI	GTCTC	2 cut(s)	24, 111
BstMBI	GATC	2 cut(s)	48, 538
BstMWI	GCNNNNNNNGC	7 cut(s)	81, 98, 139, 418, 430, 439, 479
BstSCI	CCNGG	3 cut(s)	161, 463, 567
BstV1I	GCAGC	5 cut(s)	76, 460, 463, 466, 650
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	538
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	538
Bsu36I	CCTNAGG	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	56, 412, 469
BtgI	CCRYGG	1 cut(s)	135
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	222
Cac8I	GCNNGC	3 cut(s)	7, 230, 471
CaiI	CAGNNNCTG	1 cut(s)	476
Cfr13I	GGNCC	3 cut(s)	126, 467, 511
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	3 cut(s)	70, 190, 611
CviAII	CATG	4 cut(s)	52, 130, 136, 361
CviQI	GTAC	3 cut(s)	70, 190, 611
DdeI	CTNAG	3 cut(s)	18, 93, 429
DpnI	GATC	2 cut(s)	50, 540
DpnII	GATC	2 cut(s)	48, 538
DrdI	GACNNNNNNGTC	1 cut(s)	656
DriI	GACNNNNNGTC	1 cut(s)	124
DseDI	GACNNNNNNGTC	1 cut(s)	656
EaeI	YGGCCR	2 cut(s)	54, 410
Eam1105I	GACNNNNNGTC	1 cut(s)	124
EciI	GGCGGA	1 cut(s)	491
Eco130I	CCWWGG	2 cut(s)	135, 506
Eco24I	GRGCYC	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	126, 511
Eco81I	CCTNAGG	1 cut(s)	18
EcoT14I	CCWWGG	2 cut(s)	135, 506
EcoT38I	GRGCYC	1 cut(s)	155
ErhI	CCWWGG	2 cut(s)	135, 506
Esp3I	CGTCTC	2 cut(s)	24, 111
FaeI	CATG	4 cut(s)	55, 133, 139, 364
FalI	AAGNNNNNCTT	1 cut(s)	683
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	4 cut(s)	51, 129, 135, 360
Fnu4HI	GCNGC	8 cut(s)	76, 90, 419, 422, 474, 477, 480, 639
FokI	GGATG	1 cut(s)	229
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	8 cut(s)	76, 90, 419, 422, 474, 477, 480, 639
FspBI	CTAG	1 cut(s)	615
GluI	GCNGC	8 cut(s)	76, 90, 419, 422, 474, 477, 480, 639
GsaI	CCCAGC	1 cut(s)	152
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	3 cut(s)	56, 412, 469
HapII	CCGG	8 cut(s)	81, 156, 162, 180, 377, 409, 464, 568
HgaI	GACGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	4 cut(s)	55, 133, 139, 364
HinfI	GANTC	4 cut(s)	24, 95, 201, 350
HpaII	CCGG	8 cut(s)	81, 156, 162, 180, 377, 409, 464, 568
HphI	GGTGA	2 cut(s)	428, 479
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	4 cut(s)	29, 243, 281, 515
Hpy188III	TCNNGA	1 cut(s)	156
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	2 cut(s)	188, 662
HpyAV	CCTTC	1 cut(s)	586
HpyCH4III	ACNGT	3 cut(s)	329, 335, 548
HpyCH4IV	ACGT	2 cut(s)	68, 120
HpyCH4V	TGCA	3 cut(s)	394, 581, 601
HpyF10VI	GCNNNNNNNGC	7 cut(s)	81, 98, 139, 418, 430, 439, 479
HpyF3I	CTNAG	3 cut(s)	18, 93, 429
HpySE526I	ACGT	2 cut(s)	68, 120
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	4 cut(s)	55, 133, 139, 364
Kpn2I	TCCGGA	1 cut(s)	155
KpnI	GGTACC	1 cut(s)	614
Kzo9I	GATC	2 cut(s)	48, 538
LmnI	GCTCC	6 cut(s)	83, 147, 158, 182, 250, 687
Lsp1109I	GCAGC	5 cut(s)	76, 460, 463, 466, 650
MaeI	CTAG	1 cut(s)	615
MaeII	ACGT	2 cut(s)	68, 120
MaeIII	GTNAC	3 cut(s)	329, 561, 620
MalI	GATC	2 cut(s)	50, 540
MbiI	CCGCTC	1 cut(s)	559
MboI	GATC	2 cut(s)	48, 538
MboII	GAAGA	3 cut(s)	31, 159, 162
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	2 cut(s)	144, 155
MluCI	AATT	5 cut(s)	244, 576, 605, 671, 708
MlyI	GAGTC	3 cut(s)	18, 104, 210
MnlI	CCTC	9 cut(s)	13, 72, 188, 191, 435, 438, 444, 501, 518
MroI	TCCGGA	1 cut(s)	155
MseI	TTAA	2 cut(s)	677, 712
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	4 cut(s)	75, 101, 148, 473
MspI	CCGG	8 cut(s)	81, 156, 162, 180, 377, 409, 464, 568
MspR9I	CCNGG	3 cut(s)	163, 465, 569
MwoI	GCNNNNNNNGC	7 cut(s)	81, 98, 139, 418, 430, 439, 479
NciI	CCSGG	3 cut(s)	163, 465, 569
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	48, 538
NlaIII	CATG	4 cut(s)	55, 133, 139, 364
NlaIV	GGNNCC	9 cut(s)	79, 127, 154, 160, 178, 468, 512, 612, 683
NmeAIII	GCCGAG	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 657
PfeI	GAWTC	1 cut(s)	350
PflFI	GACNNNGTC	1 cut(s)	525
PkrI	GCNGC	8 cut(s)	77, 91, 420, 423, 475, 478, 481, 640
PleI	GAGTC	3 cut(s)	18, 103, 209
PpsI	GAGTC	3 cut(s)	18, 103, 209
PspFI	CCCAGC	1 cut(s)	148
PspN4I	GGNNCC	9 cut(s)	79, 127, 154, 160, 178, 468, 512, 612, 683
PspPI	GGNCC	3 cut(s)	126, 467, 511
PstNI	CAGNNNCTG	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	538
PsyI	GACNNNGTC	1 cut(s)	525
PvuII	CAGCTG	3 cut(s)	101, 148, 473
RsaI	GTAC	3 cut(s)	71, 191, 612
RsaNI	GTAC	3 cut(s)	70, 190, 611
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	677, 712
SatI	GCNGC	8 cut(s)	76, 90, 419, 422, 474, 477, 480, 639
Sau3AI	GATC	2 cut(s)	48, 538
Sau96I	GGNCC	3 cut(s)	126, 467, 511
SchI	GAGTC	3 cut(s)	18, 104, 210
ScrFI	CCNGG	3 cut(s)	163, 465, 569
SduI	GDGCHC	2 cut(s)	144, 155
SinI	GGWCC	2 cut(s)	126, 511
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	5 cut(s)	244, 576, 605, 671, 708
SsiI	CCGC	7 cut(s)	5, 14, 75, 419, 422, 502, 559
SspMI	CTAG	1 cut(s)	615
StyD4I	CCNGG	3 cut(s)	161, 463, 567
StyI	CCWWGG	2 cut(s)	135, 506
TaaI	ACNGT	3 cut(s)	329, 335, 548
TaiI	ACGT	2 cut(s)	71, 123
TaqI	TCGA	2 cut(s)	42, 660
TasI	AATT	5 cut(s)	244, 576, 605, 671, 708
TauI	GCSGC	3 cut(s)	78, 421, 424
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	2 cut(s)	677, 712
Tru9I	TTAA	2 cut(s)	677, 712
TseI	GCWGC	5 cut(s)	89, 473, 476, 479, 638
TspDTI	ATGAA	4 cut(s)	300, 357, 437, 605
Tth111I	GACNNNGTC	1 cut(s)	525
VpaK11BI	GGWCC	2 cut(s)	126, 511
XapI	RAATTY	3 cut(s)	244, 671, 708
XspI	CTAG	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.