Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002134

Physical Location & Seq

Genomic Coordinates Forward (+)

30456661 .. 30461727

Gene Structure 5067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1224700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCGGGAAATCCCCAAGAAGGACTTGGAGACGATTTCTTTGAGCAGATCTTAGCTGTGCCGCCGTCGTATAGTGCCGGTGGTGGTGGTGAGTCAGCTGGTGGTGGGTACGGAGGAGATGTGGGGTCCATGCCCATGGTGCTGCAGCTGGGTTCTGCTGGGTCTTCGGGTGGTGGTGCTGGGTACAGAGGAGGAGGAGTTGGGATGGGGCTGGGTATTCCGTTGGGTTTGAACTTGGAGCAGGGTGGTTTTCTTGGGCAAGACAACAGGTTCAGAGATGAAGCCAACAATAATAACAACACAAACAGTTCCAATGTTTCTGCTTCAATTAATGGAAGAGATTCTGTGCATATGTCAAGTTTGTTTCCAGCATTTGGACATTTGCAAAATCACTCGTCACTCCGTCCAACGCCACCACCTCCACAACCTCCTCACCAGTTTCATAGCCAACCACCACCAGGGCTGTCTAATGCTGTCCATCACCCTCCTTCCATCCGCCCAAGGGTTCGAGCAAGGCGAGGCCAAGCAACAGATCCCCACAGTATTGCTGAACGGTTACGCCGGGAAAGAATTGCAGAGAGAATGAAGGCTTTGCAGGAATTGGTACCCAGTTGTAACAAGACAGATAGGGCAGCTATGCTTGACGAAATTGTGGATTACGTGAAATTTCTAAGGCTCCAAGTTAAGGTTTTGAGCATGAGTCGACTCGGGGGAGCAGGCGCAGTGGCTCAGCTTGTTGCTGACGTACCCTTATCAGCAGTCGAGGGGGAGGGCATGGAAGGAGGAACCAATCAACAAGCATGTGAGAAGTGGTCGAACGATGGCACAGAACAAGAAGTAGCTAAGCTGATGGAAGAAGATGTAGGAGCTGCCATGCAGTTCCTCCAGTCCAAGGCCCTCTGCATCATGCCCATATCCCTCGCCCCAGCAATTTTCCAAACACATCAACCAGACGCACCAACAATTGTGAAGCCGGAATCAAACTCCTCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

332

Amino Acids

34.79

Weight (kDa)

5.72

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	180 - 225	1.1e-08	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	184 - 228	4.6e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02590 AT4G02590 AT4G02590
fragaria_vesca	FvH4_2g22560 FvH4_2g22560 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900
malus_domestica	MD04G1224700.v1.1 MD05G1206200.v1.1 MD10G1193200.v1.1 MD12G1241500.v1.1
prunus_persica	Prupe.6G343400_v2.0.a1 Prupe.6G343400_v2.0.a1 Prupe.8G232600_v2.0.a1
pyrus_communis	pycom04g19790 pycom10g16690 pycom12g22100
rosa_chinensis	RchiOBHm_Chr3g0451111 RchiOBHm_Chr6g0289601
rosa_laevigata	RLG00000012289 RLG00000025689
rosa_multiflora	Rmu_sc0005376.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428580 Rroxscaffold_7G00177820
rosa_rugosa	Rorug02G0631400 Rorug02G0631500 Rorug02G0631600 Rorug02G0631700 Rorug02G0631800 Rorug06G0205100
rosa_samantha	Rh3AG034400 Rh3BG034700 Rh3CG033400 Rh3DG034400 Rh6AG316600 Rh6BG323000 Rh6CG329600 Rh6DG315000
rosa_wichuraiana	Rw3G002500 Rw6G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	604
AccB1I	GGYRCC	1 cut(s)	604
AccB7I	CCANNNNNTGG	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	703
AciI	CCGC	3 cut(s)	5, 62, 496
AclWI	GGATC	1 cut(s)	527
AcsI	RAATTY	1 cut(s)	665
AfaI	GTAC	4 cut(s)	110, 185, 606, 747
AfiI	CCNNNNNNNGG	6 cut(s)	20, 374, 458, 502, 685, 892
AgsI	TTSAA	2 cut(s)	232, 327
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	8 cut(s)	56, 98, 148, 635, 733, 842, 847, 869
AluI	AGCT	8 cut(s)	56, 98, 148, 635, 733, 842, 847, 869
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	527
Ama87I	CYCGRG	1 cut(s)	707
AoxI	GGCC	2 cut(s)	520, 894
ApeKI	GCWGC	4 cut(s)	142, 145, 632, 869
ApoI	RAATTY	1 cut(s)	665
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AseI	ATTAAT	1 cut(s)	330
Asp700I	GAANNNNTTC	1 cut(s)	340
Asp718I	GGTACC	1 cut(s)	604
AspLEI	GCGC	1 cut(s)	722
AspS9I	GGNCC	2 cut(s)	126, 895
AsuC2I	CCSGG	1 cut(s)	563
AsuHPI	GGTGA	3 cut(s)	101, 425, 473
AvaI	CYCGRG	1 cut(s)	707
AvaII	GGWCC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	604
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	4 cut(s)	129, 157, 644, 856
BccI	CCATC	5 cut(s)	199, 486, 500, 815, 844
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	459
BcnI	CCSGG	1 cut(s)	563
BcoDI	GTCTC	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	143
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	5 cut(s)	62, 143, 146, 633, 870
BlpI	GCTNAGC	2 cut(s)	729, 843
BlsI	GCNGC	5 cut(s)	63, 144, 147, 634, 871
Bme1390I	CCNGG	2 cut(s)	459, 563
Bme18I	GGWCC	1 cut(s)	126
BmeT110I	CYCGRG	1 cut(s)	707
BmgT120I	GGNCC	2 cut(s)	126, 895
BmiI	GGNNCC	4 cut(s)	127, 606, 677, 787
BmrFI	CCNGG	2 cut(s)	459, 563
BmrI	ACTGGG	1 cut(s)	603
BmsI	GCATC	1 cut(s)	912
BmuI	ACTGGG	1 cut(s)	603
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	869
Bpu1102I	GCTNAGC	2 cut(s)	729, 843
BpuMI	CCSGG	1 cut(s)	563
BsaAI	YACGTR	1 cut(s)	661
BsaJI	CCNNGG	4 cut(s)	135, 458, 500, 891
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 183, 213
Bsc4I	CCNNNNNNNGG	6 cut(s)	20, 374, 458, 502, 685, 892
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	3 cut(s)	436, 609, 886
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	4 cut(s)	135, 458, 500, 891
BseGI	GGATG	2 cut(s)	210, 492
BseLI	CCNNNNNNNGG	6 cut(s)	20, 374, 458, 502, 685, 892
BseMII	CTCAG	1 cut(s)	743
BseNI	ACTGG	3 cut(s)	436, 609, 886
BseRI	GAGGAG	7 cut(s)	129, 204, 207, 210, 420, 976, 979
BseXI	GCAGC	4 cut(s)	129, 157, 644, 856
BseYI	CCCAGC	5 cut(s)	148, 158, 179, 211, 925
BshFI	GGCC	2 cut(s)	522, 896
BshNI	GGYRCC	1 cut(s)	604
BsiHKCI	CYCGRG	1 cut(s)	707
BsiSI	CCGG	3 cut(s)	78, 562, 974
BslI	CCNNNNNNNGG	6 cut(s)	20, 374, 458, 502, 685, 892
BsmAI	GTCTC	1 cut(s)	24
BsmBI	CGTCTC	1 cut(s)	24
BsnI	GGCC	2 cut(s)	522, 896
BsoBI	CYCGRG	1 cut(s)	707
Bsp143I	GATC	2 cut(s)	48, 532
Bsp1720I	GCTNAGC	2 cut(s)	729, 843
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	3 cut(s)	5, 62, 496
BspANI	GGCC	2 cut(s)	522, 896
BspCNI	CTCAG	1 cut(s)	742
BspLI	GGNNCC	4 cut(s)	127, 606, 677, 787
BspMAI	CTGCAG	1 cut(s)	147
BspPI	GGATC	1 cut(s)	527
BspT107I	GGYRCC	1 cut(s)	604
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	3 cut(s)	436, 609, 886
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	4 cut(s)	135, 458, 500, 891
BssMI	GATC	2 cut(s)	48, 532
BssT1I	CCWWGG	3 cut(s)	135, 500, 891
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	3 cut(s)	308, 542, 555
Bst6I	CTCTTC	1 cut(s)	331
BstBAI	YACGTR	1 cut(s)	661
BstC8I	GCNNGC	1 cut(s)	718
BstDEI	CTNAG	4 cut(s)	52, 671, 729, 843
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	210, 492
BstHHI	GCGC	1 cut(s)	722
BstKTI	GATC	2 cut(s)	51, 535
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	48, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNI	CCWGG	1 cut(s)	459
BstNSI	RCATGY	1 cut(s)	804
BstSCI	CCNGG	2 cut(s)	457, 561
BstSFI	CTRYAG	1 cut(s)	143
BstV1I	GCAGC	4 cut(s)	129, 157, 644, 856
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	2 cut(s)	48, 532
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	2 cut(s)	48, 532
BsuRI	GGCC	2 cut(s)	522, 896
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	210, 492
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	1 cut(s)	729
Cac8I	GCNNGC	1 cut(s)	718
CfoI	GCGC	1 cut(s)	722
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	2 cut(s)	126, 895
CseI	GACGC	1 cut(s)	962
Csp6I	GTAC	4 cut(s)	109, 184, 605, 746
CviAII	CATG	7 cut(s)	130, 136, 697, 775, 801, 874, 907
CviQI	GTAC	4 cut(s)	109, 184, 605, 746
DdeI	CTNAG	4 cut(s)	52, 671, 729, 843
DpnI	GATC	2 cut(s)	50, 534
DpnII	GATC	2 cut(s)	48, 532
Eam1104I	CTCTTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	331
EciI	GGCGGA	1 cut(s)	485
Eco130I	CCWWGG	3 cut(s)	135, 500, 891
Eco47I	GGWCC	1 cut(s)	126
Eco88I	CYCGRG	1 cut(s)	707
EcoO109I	RGGNCCY	1 cut(s)	895
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	3 cut(s)	135, 500, 891
ErhI	CCWWGG	3 cut(s)	135, 500, 891
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	7 cut(s)	133, 139, 700, 778, 804, 877, 910
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FatI	CATG	7 cut(s)	129, 135, 696, 774, 800, 873, 906
FauNDI	CATATG	1 cut(s)	351
FblI	GTMKAC	1 cut(s)	703
Fnu4HI	GCNGC	5 cut(s)	62, 143, 146, 633, 870
FokI	GGATG	2 cut(s)	217, 479
Fsp4HI	GCNGC	5 cut(s)	62, 143, 146, 633, 870
GlaI	GCGC	1 cut(s)	721
GluI	GCNGC	5 cut(s)	62, 143, 146, 633, 870
GsaI	CCCAGC	5 cut(s)	152, 162, 183, 215, 929
GsuI	CTGGAG	1 cut(s)	869
HaeIII	GGCC	2 cut(s)	522, 896
HapII	CCGG	3 cut(s)	78, 562, 974
HgaI	GACGC	1 cut(s)	962
HhaI	GCGC	1 cut(s)	722
Hin1II	CATG	7 cut(s)	133, 139, 700, 778, 804, 877, 910
Hin6I	GCGC	1 cut(s)	720
HinP1I	GCGC	1 cut(s)	720
HincII	GTYRAC	1 cut(s)	704
HindII	GTYRAC	1 cut(s)	704
HinfI	GANTC	5 cut(s)	92, 341, 700, 705, 977
HpaII	CCGG	3 cut(s)	78, 562, 974
HphI	GGTGA	3 cut(s)	101, 425, 473
Hpy166II	GTNNAC	1 cut(s)	704
Hpy188I	TCNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	704
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	4 cut(s)	14, 498, 580, 773
HpyCH4III	ACNGT	3 cut(s)	308, 542, 555
HpyCH4IV	ACGT	2 cut(s)	660, 744
HpyCH4V	TGCA	7 cut(s)	145, 349, 385, 575, 595, 877, 903
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	4 cut(s)	52, 671, 729, 843
HpySE526I	ACGT	2 cut(s)	660, 744
Hsp92II	CATG	7 cut(s)	133, 139, 700, 778, 804, 877, 910
HspAI	GCGC	1 cut(s)	720
KpnI	GGTACC	1 cut(s)	608
Kzo9I	GATC	2 cut(s)	48, 532
LmnI	GCTCC	4 cut(s)	238, 681, 713, 866
Lsp1109I	GCAGC	4 cut(s)	129, 157, 644, 856
LweI	GCATC	1 cut(s)	912
MaeII	ACGT	2 cut(s)	660, 744
MaeIII	GTNAC	3 cut(s)	396, 555, 614
MalI	GATC	2 cut(s)	50, 534
MboI	GATC	2 cut(s)	48, 532
MboII	GAAGA	4 cut(s)	156, 348, 866, 869
MfeI	CAATTG	1 cut(s)	963
MflI	RGATCY	2 cut(s)	48, 532
MluCI	AATT	7 cut(s)	327, 570, 599, 648, 665, 930, 963
MlyI	GAGTC	3 cut(s)	101, 699, 709
MmeI	TCCRAC	1 cut(s)	431
MroXI	GAANNNNTTC	1 cut(s)	340
MseI	TTAA	2 cut(s)	330, 684
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	2 cut(s)	98, 148
MspI	CCGG	3 cut(s)	78, 562, 974
MspR9I	CCNGG	2 cut(s)	459, 563
MunI	CAATTG	1 cut(s)	963
MvaI	CCWGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	1 cut(s)	139
NciI	CCSGG	1 cut(s)	563
NcoI	CCATGG	1 cut(s)	135
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	2 cut(s)	48, 532
NlaIII	CATG	7 cut(s)	133, 139, 700, 778, 804, 877, 910
NlaIV	GGNNCC	4 cut(s)	127, 606, 677, 787
NmuCI	GTSAC	1 cut(s)	396
NspI	RCATGY	1 cut(s)	804
PcsI	WCGNNNNNNNCGW	1 cut(s)	514
PdmI	GAANNNNTTC	1 cut(s)	340
PfeI	GAWTC	2 cut(s)	341, 977
PflMI	CCANNNNNTGG	1 cut(s)	374
PkrI	GCNGC	5 cut(s)	63, 144, 147, 634, 871
PleI	GAGTC	3 cut(s)	100, 699, 708
PpsI	GAGTC	3 cut(s)	100, 699, 708
Ppu21I	YACGTR	1 cut(s)	661
PshBI	ATTAAT	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	457
PspFI	CCCAGC	5 cut(s)	148, 158, 179, 211, 925
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	4 cut(s)	127, 606, 677, 787
PspPI	GGNCC	2 cut(s)	126, 895
PstI	CTGCAG	1 cut(s)	147
PsuI	RGATCY	2 cut(s)	48, 532
PvuII	CAGCTG	2 cut(s)	98, 148
RsaI	GTAC	4 cut(s)	110, 185, 606, 747
RsaNI	GTAC	4 cut(s)	109, 184, 605, 746
RseI	CAYNNNNRTG	1 cut(s)	134
SalI	GTCGAC	1 cut(s)	702
SaqAI	TTAA	2 cut(s)	330, 684
SatI	GCNGC	5 cut(s)	62, 143, 146, 633, 870
Sau3AI	GATC	2 cut(s)	48, 532
Sau96I	GGNCC	2 cut(s)	126, 895
SchI	GAGTC	3 cut(s)	101, 699, 709
ScrFI	CCNGG	2 cut(s)	459, 563
SfaNI	GCATC	1 cut(s)	912
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	7 cut(s)	327, 570, 599, 648, 665, 930, 963
SsiI	CCGC	3 cut(s)	5, 62, 496
StyD4I	CCNGG	2 cut(s)	457, 561
StyI	CCWWGG	3 cut(s)	135, 500, 891
TaaI	ACNGT	3 cut(s)	308, 542, 555
TaiI	ACGT	2 cut(s)	663, 747
TaqI	TCGA	4 cut(s)	508, 703, 762, 815
TasI	AATT	7 cut(s)	327, 570, 599, 648, 665, 930, 963
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	2 cut(s)	341, 977
Tru1I	TTAA	2 cut(s)	330, 684
Tru9I	TTAA	2 cut(s)	330, 684
TscAI	CASTG	1 cut(s)	729
TseFI	GTSAC	1 cut(s)	396
TseI	GCWGC	4 cut(s)	142, 145, 632, 869
Tsp45I	GTSAC	1 cut(s)	396
TspDTI	ATGAA	3 cut(s)	294, 431, 599
TspGWI	ACGGA	3 cut(s)	126, 210, 392
TspRI	CASTG	1 cut(s)	729
Van91I	CCANNNNNTGG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	126
VspI	ATTAAT	1 cut(s)	330
XapI	RAATTY	1 cut(s)	665
XceI	RCATGY	1 cut(s)	804
XcmI	CCANNNNNNNNNTGG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	703
XmnI	GAANNNNTTC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.