Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002134

Physical Location & Seq

Genomic Coordinates Reverse (-)

2218943 .. 2223248

Gene Structure 4306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G002500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCGGGCAATCCGCCTGAGGGACTCGGAGACGATTTCTTCGAGCAGATCATGGCCGTTCCTCAAACGTACAGCGGCTCCGGCTCTGCTGCTGAGTCAGCTGGTGGTGGCTATGGAGACTTGGGGTCCATGCCCATGGTGCTGCAGCTGGGCTCCGGAACCGGGTCTTCTTCTGGCTCCGGCGTCGGGTACAGAGGAGGAGTGGGGTCGGTTGGGATGGGTATGGGCATGCCTTTGGGTCTGAATTTGGAGCAGGGGTTTCTTGGACAAGACAGGTTCAGAGATGAAGTTGAACCCAACTCTAACAGCACCAACAACAACAACAACGGTAACAGTTCTAATTTGATGGCATGGCAGGAAAGAGATTCGGTTCACATGACGAGTTTGTTTCCGGCATTTGGACATTTGCAAAACCACTCTGTCCGGCCAACGCCGCCGCCTCCTCAGCCTCACCAGCAGTTTCATAGCCAACCAGCACCGGGGCCAGCTGCTGCTGCCCATCACCCTCCTGCTATCCGCCCAAGGGTCCGAGCAAGACGAGGTCAAGCAACAGATCCCCACAGTATTGCTGAGCGGTTACGCCGGGAAAGAATTGCAGAAAGAATGAAGGCTTTGCAGGAATTGGTACCTAGTTGTAACAAGACAGATAGGGCAGCTATGCTTGACGAAATCGTCGATTATGTGAAATTTTTAAGGCTCCAAGTAAAGGTTTTGAGCATGAGTAGACTTGGAGGAGCAGGTGCAGTGGCTCAGCTTGTAGCTGATGTACCCTTATCAGCAGTTGAGGTAATCAAACCTGAACAATGCATCCCTAAACCTATTGTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

276

Amino Acids

29.29

Weight (kDa)

6.71

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	187 - 232	8.2e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	191 - 235	3.5e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02590 AT4G02590 AT4G02590
fragaria_vesca	FvH4_2g22560 FvH4_2g22560 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900
malus_domestica	MD04G1224700.v1.1 MD05G1206200.v1.1 MD10G1193200.v1.1 MD12G1241500.v1.1
prunus_persica	Prupe.6G343400_v2.0.a1 Prupe.6G343400_v2.0.a1 Prupe.8G232600_v2.0.a1
pyrus_communis	pycom04g19790 pycom10g16690 pycom12g22100
rosa_chinensis	RchiOBHm_Chr3g0451111 RchiOBHm_Chr6g0289601
rosa_laevigata	RLG00000012289 RLG00000025689
rosa_multiflora	Rmu_sc0005376.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428580 Rroxscaffold_7G00177820
rosa_rugosa	Rorug02G0631400 Rorug02G0631500 Rorug02G0631600 Rorug02G0631700 Rorug02G0631800 Rorug06G0205100
rosa_samantha	Rh3AG034400 Rh3BG034700 Rh3CG033400 Rh3DG034400 Rh6AG316600 Rh6BG323000 Rh6CG329600 Rh6DG315000
rosa_wichuraiana	Rw3G002500 Rw6G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	728
AasI	GACNNNNNNGTC	1 cut(s)	671
Acc36I	ACCTGC	1 cut(s)	728
Acc65I	GGTACC	1 cut(s)	625
AccB1I	GGYRCC	1 cut(s)	625
AccBSI	CCGCTC	1 cut(s)	574
AccI	GTMKAC	1 cut(s)	724
AccIII	TCCGGA	1 cut(s)	155
AciI	CCGC	7 cut(s)	5, 14, 75, 434, 437, 517, 574
AclWI	GGATC	1 cut(s)	548
AcoI	YGGCCR	2 cut(s)	54, 425
AcsI	RAATTY	2 cut(s)	244, 686
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	4 cut(s)	71, 191, 627, 768
AfiI	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 398, 479, 523, 706
AgsI	TTSAA	1 cut(s)	293
AhdI	GACNNNNNGTC	1 cut(s)	124
AloI	GAACNNNNNNTCC	2 cut(s)	792, 824
AluBI	AGCT	6 cut(s)	101, 148, 488, 656, 754, 761
AluI	AGCT	6 cut(s)	101, 148, 488, 656, 754, 761
Alw26I	GTCTC	2 cut(s)	24, 111
AlwI	GGATC	1 cut(s)	548
AlwNI	CAGNNNCTG	1 cut(s)	491
Aor13HI	TCCGGA	1 cut(s)	155
AoxI	GGCC	3 cut(s)	54, 425, 482
ApeKI	GCWGC	7 cut(s)	89, 142, 145, 488, 491, 494, 653
ApoI	RAATTY	2 cut(s)	244, 686
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
Asp718I	GGTACC	1 cut(s)	625
AspS9I	GGNCC	3 cut(s)	126, 482, 526
AsuC2I	CCSGG	3 cut(s)	163, 480, 584
AsuHPI	GGTGA	2 cut(s)	443, 494
AvaII	GGWCC	2 cut(s)	126, 526
AxyI	CCTNAGG	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	625
BanII	GRGCYC	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	444
BbvI	GCAGC	7 cut(s)	76, 129, 157, 475, 478, 481, 665
BccI	CCATC	3 cut(s)	211, 340, 507
BceAI	ACGGC	1 cut(s)	41
BcnI	CCSGG	3 cut(s)	163, 480, 584
BcoDI	GTCTC	2 cut(s)	24, 111
BfaI	CTAG	1 cut(s)	630
BfmI	CTRYAG	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	728
BlpI	GCTNAGC	2 cut(s)	570, 750
Bme1390I	CCNGG	3 cut(s)	163, 480, 584
Bme18I	GGWCC	2 cut(s)	126, 526
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmgT120I	GGNCC	3 cut(s)	126, 482, 526
BmiI	GGNNCC	9 cut(s)	79, 127, 154, 160, 178, 483, 527, 627, 698
BmrFI	CCNGG	3 cut(s)	163, 480, 584
BmsI	GCATC	1 cut(s)	816
BpiI	GAAGAC	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	444
Bpu1102I	GCTNAGC	2 cut(s)	570, 750
BpuMI	CCSGG	3 cut(s)	163, 480, 584
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	3 cut(s)	135, 479, 521
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 242, 272
Bsc4I	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 398, 479, 523, 706
Bse21I	CCTNAGG	1 cut(s)	18
BseAI	TCCGGA	1 cut(s)	155
BseDI	CCNNGG	3 cut(s)	135, 479, 521
BseGI	GGATG	2 cut(s)	222, 807
BseLI	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 398, 479, 523, 706
BseMII	CTCAG	5 cut(s)	9, 84, 458, 561, 764
BseRI	GAGGAG	4 cut(s)	210, 213, 432, 747
BseXI	GCAGC	7 cut(s)	76, 129, 157, 475, 478, 481, 665
BseYI	CCCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	762
BshFI	GGCC	3 cut(s)	56, 427, 484
BshNI	GGYRCC	1 cut(s)	625
BsiSI	CCGG	8 cut(s)	81, 156, 162, 180, 392, 424, 479, 583
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 398, 479, 523, 706
BsmAI	GTCTC	2 cut(s)	24, 111
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	3 cut(s)	56, 427, 484
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp13I	TCCGGA	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	48, 553
Bsp1720I	GCTNAGC	2 cut(s)	570, 750
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	7 cut(s)	5, 14, 75, 434, 437, 517, 574
BspANI	GGCC	3 cut(s)	56, 427, 484
BspCNI	CTCAG	5 cut(s)	10, 85, 457, 562, 763
BspEI	TCCGGA	1 cut(s)	155
BspLI	GGNNCC	9 cut(s)	79, 127, 154, 160, 178, 483, 527, 627, 698
BspMAI	CTGCAG	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	728
BspPI	GGATC	1 cut(s)	548
BspT107I	GGYRCC	1 cut(s)	625
BsrBI	CCGCTC	1 cut(s)	574
BssECI	CCNNGG	3 cut(s)	135, 479, 521
BssMI	GATC	2 cut(s)	48, 553
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	2 cut(s)	135, 521
Bst4CI	ACNGT	3 cut(s)	329, 335, 563
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	3 cut(s)	7, 230, 486
BstDEI	CTNAG	5 cut(s)	18, 93, 444, 570, 750
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	222, 807
BstKTI	GATC	2 cut(s)	51, 556
BstMAI	GTCTC	2 cut(s)	24, 111
BstMBI	GATC	2 cut(s)	48, 553
BstMWI	GCNNNNNNNGC	7 cut(s)	81, 98, 139, 433, 445, 454, 494
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	3 cut(s)	161, 478, 582
BstSFI	CTRYAG	1 cut(s)	143
BstV1I	GCAGC	7 cut(s)	76, 129, 157, 475, 478, 481, 665
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	553
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	553
Bsu36I	CCTNAGG	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	56, 427, 484
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	222, 807
BtsI	GCAGTG	1 cut(s)	750
BtsIMutI	CAGTG	1 cut(s)	750
BveI	ACCTGC	1 cut(s)	728
Cac8I	GCNNGC	3 cut(s)	7, 230, 486
CaiI	CAGNNNCTG	1 cut(s)	491
Cfr13I	GGNCC	3 cut(s)	126, 482, 526
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	4 cut(s)	70, 190, 626, 767
CviAII	CATG	7 cut(s)	52, 130, 136, 229, 351, 376, 718
CviQI	GTAC	4 cut(s)	70, 190, 626, 767
DdeI	CTNAG	5 cut(s)	18, 93, 444, 570, 750
DpnI	GATC	2 cut(s)	50, 555
DpnII	GATC	2 cut(s)	48, 553
DrdI	GACNNNNNNGTC	1 cut(s)	671
DriI	GACNNNNNGTC	1 cut(s)	124
DseDI	GACNNNNNNGTC	1 cut(s)	671
EaeI	YGGCCR	2 cut(s)	54, 425
Eam1105I	GACNNNNNGTC	1 cut(s)	124
EciI	GGCGGA	1 cut(s)	506
Eco130I	CCWWGG	2 cut(s)	135, 521
Eco24I	GRGCYC	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	126, 526
Eco81I	CCTNAGG	1 cut(s)	18
EcoT14I	CCWWGG	2 cut(s)	135, 521
EcoT22I	ATGCAT	1 cut(s)	809
EcoT38I	GRGCYC	1 cut(s)	155
ErhI	CCWWGG	2 cut(s)	135, 521
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	7 cut(s)	55, 133, 139, 232, 354, 379, 721
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	7 cut(s)	51, 129, 135, 228, 350, 375, 717
FblI	GTMKAC	1 cut(s)	724
FokI	GGATG	2 cut(s)	229, 794
FriOI	GRGCYC	1 cut(s)	155
FspBI	CTAG	1 cut(s)	630
GsaI	CCCAGC	1 cut(s)	152
HaeIII	GGCC	3 cut(s)	56, 427, 484
HapII	CCGG	8 cut(s)	81, 156, 162, 180, 392, 424, 479, 583
HgaI	GACGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	7 cut(s)	55, 133, 139, 232, 354, 379, 721
HinfI	GANTC	3 cut(s)	24, 95, 365
HpaII	CCGG	8 cut(s)	81, 156, 162, 180, 392, 424, 479, 583
HphI	GGTGA	2 cut(s)	443, 494
Hpy166II	GTNNAC	2 cut(s)	373, 725
Hpy188I	TCNGA	4 cut(s)	29, 243, 281, 530
Hpy188III	TCNNGA	1 cut(s)	156
Hpy8I	GTNNAC	2 cut(s)	373, 725
Hpy99I	CGWCG	2 cut(s)	188, 677
HpyAV	CCTTC	1 cut(s)	601
HpyCH4III	ACNGT	3 cut(s)	329, 335, 563
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	6 cut(s)	145, 409, 596, 616, 743, 807
HpyF10VI	GCNNNNNNNGC	7 cut(s)	81, 98, 139, 433, 445, 454, 494
HpyF3I	CTNAG	5 cut(s)	18, 93, 444, 570, 750
HpySE526I	ACGT	1 cut(s)	68
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	7 cut(s)	55, 133, 139, 232, 354, 379, 721
Kpn2I	TCCGGA	1 cut(s)	155
KpnI	GGTACC	1 cut(s)	629
Kzo9I	GATC	2 cut(s)	48, 553
LmnI	GCTCC	6 cut(s)	83, 158, 182, 250, 702, 734
Lsp1109I	GCAGC	7 cut(s)	76, 129, 157, 475, 478, 481, 665
LweI	GCATC	1 cut(s)	816
MaeI	CTAG	1 cut(s)	630
MaeII	ACGT	1 cut(s)	68
MaeIII	GTNAC	4 cut(s)	329, 576, 635, 823
MalI	GATC	2 cut(s)	50, 555
MbiI	CCGCTC	1 cut(s)	574
MboI	GATC	2 cut(s)	48, 553
MboII	GAAGA	3 cut(s)	31, 159, 162
MflI	RGATCY	1 cut(s)	553
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	5 cut(s)	244, 340, 591, 620, 686
MlyI	GAGTC	2 cut(s)	18, 104
Mph1103I	ATGCAT	1 cut(s)	809
MroI	TCCGGA	1 cut(s)	155
MseI	TTAA	1 cut(s)	692
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	4 cut(s)	75, 101, 148, 488
MspI	CCGG	8 cut(s)	81, 156, 162, 180, 392, 424, 479, 583
MspR9I	CCNGG	3 cut(s)	163, 480, 584
MwoI	GCNNNNNNNGC	7 cut(s)	81, 98, 139, 433, 445, 454, 494
NciI	CCSGG	3 cut(s)	163, 480, 584
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	48, 553
NlaIII	CATG	7 cut(s)	55, 133, 139, 232, 354, 379, 721
NlaIV	GGNNCC	9 cut(s)	79, 127, 154, 160, 178, 483, 527, 627, 698
NsiI	ATGCAT	1 cut(s)	809
NspI	RCATGY	1 cut(s)	232
PaeI	GCATGC	1 cut(s)	232
PaqCI	CACCTGC	1 cut(s)	728
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 672
PfeI	GAWTC	1 cut(s)	365
PflFI	GACNNNGTC	1 cut(s)	540
PleI	GAGTC	2 cut(s)	18, 103
PpsI	GAGTC	2 cut(s)	18, 103
PspFI	CCCAGC	1 cut(s)	148
PspN4I	GGNNCC	9 cut(s)	79, 127, 154, 160, 178, 483, 527, 627, 698
PspPI	GGNCC	3 cut(s)	126, 482, 526
PstI	CTGCAG	1 cut(s)	147
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	553
PsyI	GACNNNGTC	1 cut(s)	540
PvuII	CAGCTG	3 cut(s)	101, 148, 488
RsaI	GTAC	4 cut(s)	71, 191, 627, 768
RsaNI	GTAC	4 cut(s)	70, 190, 626, 767
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	692
Sau3AI	GATC	2 cut(s)	48, 553
Sau96I	GGNCC	3 cut(s)	126, 482, 526
SchI	GAGTC	2 cut(s)	18, 104
ScrFI	CCNGG	3 cut(s)	163, 480, 584
SduI	GDGCHC	1 cut(s)	155
SfaNI	GCATC	1 cut(s)	816
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	2 cut(s)	126, 526
SmiMI	CAYNNNNRTG	1 cut(s)	134
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	5 cut(s)	244, 340, 591, 620, 686
SsiI	CCGC	7 cut(s)	5, 14, 75, 434, 437, 517, 574
SspMI	CTAG	1 cut(s)	630
StyD4I	CCNGG	3 cut(s)	161, 478, 582
StyI	CCWWGG	2 cut(s)	135, 521
TaaI	ACNGT	3 cut(s)	329, 335, 563
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	2 cut(s)	42, 675
TasI	AATT	5 cut(s)	244, 340, 591, 620, 686
TauI	GCSGC	3 cut(s)	78, 436, 439
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	692
Tru9I	TTAA	1 cut(s)	692
TscAI	CASTG	1 cut(s)	750
TseI	GCWGC	7 cut(s)	89, 142, 145, 488, 491, 494, 653
TspDTI	ATGAA	3 cut(s)	300, 452, 620
TspRI	CASTG	1 cut(s)	750
Tth111I	GACNNNGTC	1 cut(s)	540
VpaK11BI	GGWCC	2 cut(s)	126, 526
XapI	RAATTY	2 cut(s)	244, 686
XceI	RCATGY	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	724
XspI	CTAG	1 cut(s)	630
Zsp2I	ATGCAT	1 cut(s)	809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.