Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002134

Physical Location & Seq

Genomic Coordinates Reverse (-)

20657838 .. 20661789

Gene Structure 3952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G232600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCCAACAACCCTTCTGAAGCCCCGGCCGACGATTTCCTCGAGCAAATTCTTGGCCTGCCCAACTTTGCTTCGGCAGATGCTAATTTGGCTGGAAACGACGGAGGCTTGACCGGGGCTCAGGTGTCTCCGTCTTCGATGATGCTTCAGTTAAATTCCGGCGATGGCTCCGGCCATATCGCCGCCGTCGGCGGTGGGTACCGTGGACCGGTTTTCCCGTTAGGGTTAAGCCTGGAGCAGGGAAAGGCTGGATTTTTGAAGCCCGAGGAGGCTTCAGGGAGTGGGAAGCGGTTTCGAGACGACATGGTTGATAGTAGAGGTTCATCTGTGAAAAATGTTTTCCACGGTCAACCAATTTCCAATTCAGTTGCTGCAGCACCACATCCACCGGCTATGCGACCAAGGGTGCGGGCTAGAAGAGGACAAGCCACAGATCCACACAGCATCGCTGAGCGGTTGCGCCGAGAAAGAATAGCAGAGAGAATCAGGGCATTGCAGGAACTAGTTCCTAGTGTCAACAAGACGGATAGAGCTGCCATGCTTGATGAAATCATGGATTACGTGAAGTTCCTAAGGCTCCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGAGGAGCTGGTGCTGTAGCACCACTTGTAACGGACATTCCACTATCTTCAGTTGAGGAAGAAGGTGGCGAAGGTGGTAGAAACCAACCAGCATGGGATAAGTGGTCGAACGATGGCACAGAACGGCAAGTAGCTAAGCTTATGGAAGAAAATGTTGGGGCTGCAATGCAGTTCCTTCAATCAAAGGCTCTTTGCATCATGCCTATCTCACTGGCCTCAGCAATTTACCACACACAACCACCAGACACATCTAGTGTTGTGAAGCCTGAAATGAACCCTCCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

299

Amino Acids

31.7

Weight (kDa)

6.01

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02590 AT4G02590 AT4G02590
fragaria_vesca	FvH4_2g22560 FvH4_2g22560 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900
malus_domestica	MD04G1224700.v1.1 MD05G1206200.v1.1 MD10G1193200.v1.1 MD12G1241500.v1.1
prunus_persica	Prupe.6G343400_v2.0.a1 Prupe.6G343400_v2.0.a1 Prupe.8G232600_v2.0.a1
pyrus_communis	pycom04g19790 pycom10g16690 pycom12g22100
rosa_chinensis	RchiOBHm_Chr3g0451111 RchiOBHm_Chr6g0289601
rosa_laevigata	RLG00000012289 RLG00000025689
rosa_multiflora	Rmu_sc0005376.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428580 Rroxscaffold_7G00177820
rosa_rugosa	Rorug02G0631400 Rorug02G0631500 Rorug02G0631600 Rorug02G0631700 Rorug02G0631800 Rorug06G0205100
rosa_samantha	Rh3AG034400 Rh3BG034700 Rh3CG033400 Rh3DG034400 Rh6AG316600 Rh6BG323000 Rh6CG329600 Rh6DG315000
rosa_wichuraiana	Rw3G002500 Rw6G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	198
AccB1I	GGYRCC	1 cut(s)	198
AccBSI	CCGCTC	1 cut(s)	454
AciI	CCGC	5 cut(s)	183, 192, 289, 409, 454
AclWI	GGATC	1 cut(s)	428
AcoI	YGGCCR	3 cut(s)	3, 27, 172
AcsI	RAATTY	2 cut(s)	48, 154
AcuI	CTGAAG	4 cut(s)	39, 131, 258, 642
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	3 cut(s)	208, 238, 586
AgeI	ACCGGT	1 cut(s)	208
AgsI	TTSAA	2 cut(s)	259, 788
AhlI	ACTAGT	1 cut(s)	502
AjnI	CCWGG	1 cut(s)	231
AjuI	GAANNNNNNNTTGG	4 cut(s)	346, 378, 747, 779
AluBI	AGCT	4 cut(s)	533, 617, 743, 748
AluI	AGCT	4 cut(s)	533, 617, 743, 748
Alw26I	GTCTC	2 cut(s)	132, 291
AlwI	GGATC	1 cut(s)	428
AlwNI	CAGNNNCTG	1 cut(s)	371
Ama87I	CYCGRG	2 cut(s)	41, 263
AoxI	GGCC	5 cut(s)	3, 27, 55, 172, 822
ApeKI	GCWGC	4 cut(s)	371, 374, 533, 770
ApoI	RAATTY	2 cut(s)	48, 154
AsiGI	ACCGGT	1 cut(s)	208
Asp700I	GAANNNNTTC	1 cut(s)	504
Asp718I	GGTACC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	462
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	2 cut(s)	26, 115
AvaI	CYCGRG	2 cut(s)	41, 263
AvaII	GGWCC	1 cut(s)	206
AxyI	CCTNAGG	1 cut(s)	572
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	198
BanII	GRGCYC	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	126
BbvCI	CCTCAGC	1 cut(s)	826
BbvI	GCAGC	4 cut(s)	358, 386, 520, 757
BccI	CCATC	2 cut(s)	158, 716
BceAI	ACGGC	2 cut(s)	170, 749
BciT130I	CCWGG	1 cut(s)	233
BcnI	CCSGG	2 cut(s)	26, 115
BcoDI	GTCTC	2 cut(s)	132, 291
BcuI	ACTAGT	1 cut(s)	502
BfaI	CTAG	4 cut(s)	414, 503, 510, 861
BfmI	CTRYAG	2 cut(s)	372, 624
BisI	GCNGC	5 cut(s)	183, 372, 375, 534, 771
BlpI	GCTNAGC	2 cut(s)	450, 744
BlsI	GCNGC	5 cut(s)	184, 373, 376, 535, 772
Bme1390I	CCNGG	3 cut(s)	26, 115, 233
Bme18I	GGWCC	1 cut(s)	206
BmeT110I	CYCGRG	2 cut(s)	41, 263
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	3 cut(s)	169, 200, 578
BmrFI	CCNGG	3 cut(s)	26, 115, 233
BmsI	GCATC	4 cut(s)	70, 132, 453, 813
BpiI	GAAGAC	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	254
Bpu10I	CCTNAGC	2 cut(s)	120, 826
Bpu1102I	GCTNAGC	2 cut(s)	450, 744
BpuMI	CCSGG	2 cut(s)	26, 115
BsaAI	YACGTR	1 cut(s)	562
BsaJI	CCNNGG	6 cut(s)	24, 114, 202, 264, 343, 401
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 238, 586
Bse118I	RCCGGY	2 cut(s)	208, 388
Bse1I	ACTGG	1 cut(s)	825
Bse21I	CCTNAGG	1 cut(s)	572
Bse3DI	GCAATG	2 cut(s)	491, 780
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	6 cut(s)	24, 114, 202, 264, 343, 401
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	3 cut(s)	208, 238, 586
BseMI	GCAATG	2 cut(s)	491, 780
BseMII	CTCAG	3 cut(s)	134, 441, 840
BseNI	ACTGG	1 cut(s)	825
BseRI	GAGGAG	2 cut(s)	281, 627
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	4 cut(s)	358, 386, 520, 757
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	5 cut(s)	5, 29, 57, 174, 824
BshNI	GGYRCC	1 cut(s)	198
BshTI	ACCGGT	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	30
BsiHKCI	CYCGRG	2 cut(s)	41, 263
BsiSI	CCGG	6 cut(s)	26, 114, 159, 171, 209, 389
BslI	CCNNNNNNNGG	3 cut(s)	208, 238, 586
BsmAI	GTCTC	2 cut(s)	132, 291
BsmBI	CGTCTC	1 cut(s)	291
BsnI	GGCC	5 cut(s)	5, 29, 57, 174, 824
BsoBI	CYCGRG	2 cut(s)	41, 263
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	433
Bsp1720I	GCTNAGC	2 cut(s)	450, 744
BspACI	CCGC	5 cut(s)	183, 192, 289, 409, 454
BspANI	GGCC	5 cut(s)	5, 29, 57, 174, 824
BspCNI	CTCAG	3 cut(s)	133, 442, 839
BspLI	GGNNCC	3 cut(s)	169, 200, 578
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	1 cut(s)	428
BspT107I	GGYRCC	1 cut(s)	198
BsrBI	CCGCTC	1 cut(s)	454
BsrDI	GCAATG	2 cut(s)	491, 780
BsrFI	RCCGGY	2 cut(s)	208, 388
BsrI	ACTGG	1 cut(s)	825
BssAI	RCCGGY	2 cut(s)	208, 388
BssECI	CCNNGG	6 cut(s)	24, 114, 202, 264, 343, 401
BssMI	GATC	1 cut(s)	433
BssT1I	CCWWGG	1 cut(s)	401
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	2 cut(s)	203, 347
Bst6I	CTCTTC	1 cut(s)	412
BstBAI	YACGTR	1 cut(s)	562
BstC8I	GCNNGC	2 cut(s)	59, 411
BstDEI	CTNAG	5 cut(s)	120, 450, 572, 744, 826
BstDSI	CCRYGG	2 cut(s)	202, 343
BstENI	CCTNNNNNAGG	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	382
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	2 cut(s)	132, 291
BstMBI	GATC	1 cut(s)	433
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	3 cut(s)	24, 113, 231
BstSFI	CTRYAG	2 cut(s)	372, 624
BstV1I	GCAGC	4 cut(s)	358, 386, 520, 757
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BstZI	CGGCCG	1 cut(s)	27
Bsu36I	CCTNAGG	1 cut(s)	572
BsuRI	GGCC	5 cut(s)	5, 29, 57, 174, 824
BtgI	CCRYGG	2 cut(s)	202, 343
BtgZI	GCGATG	2 cut(s)	177, 430
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	1 cut(s)	818
Cac8I	GCNNGC	2 cut(s)	59, 411
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	1 cut(s)	462
Cfr10I	RCCGGY	2 cut(s)	208, 388
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	199
CspAI	ACCGGT	1 cut(s)	208
CviAII	CATG	6 cut(s)	304, 538, 553, 598, 702, 808
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	5 cut(s)	120, 450, 572, 744, 826
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
EaeI	YGGCCR	3 cut(s)	3, 27, 172
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
EclXI	CGGCCG	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	401
Eco24I	GRGCYC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	206
Eco52I	CGGCCG	1 cut(s)	27
Eco57I	CTGAAG	4 cut(s)	39, 131, 258, 642
Eco81I	CCTNAGG	1 cut(s)	572
Eco88I	CYCGRG	2 cut(s)	41, 263
EcoNI	CCTNNNNNAGG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	401
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	401
Esp3I	CGTCTC	1 cut(s)	291
FaeI	CATG	6 cut(s)	307, 541, 556, 601, 705, 811
FatI	CATG	6 cut(s)	303, 537, 552, 597, 701, 807
FauI	CCCGC	1 cut(s)	402
Fnu4HI	GCNGC	5 cut(s)	183, 372, 375, 534, 771
FokI	GGATG	1 cut(s)	369
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	5 cut(s)	183, 372, 375, 534, 771
FspBI	CTAG	4 cut(s)	414, 503, 510, 861
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	5 cut(s)	183, 372, 375, 534, 771
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	5 cut(s)	5, 29, 57, 174, 824
HapII	CCGG	6 cut(s)	26, 114, 159, 171, 209, 389
HhaI	GCGC	1 cut(s)	462
Hin1II	CATG	6 cut(s)	307, 541, 556, 601, 705, 811
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HincII	GTYRAC	2 cut(s)	350, 517
HindII	GTYRAC	2 cut(s)	350, 517
HindIII	AAGCTT	1 cut(s)	746
HinfI	GANTC	1 cut(s)	483
HpaII	CCGG	6 cut(s)	26, 114, 159, 171, 209, 389
Hpy166II	GTNNAC	3 cut(s)	206, 350, 517
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	3 cut(s)	206, 350, 517
Hpy99I	CGWCG	3 cut(s)	35, 104, 191
HpyAV	CCTTC	5 cut(s)	24, 580, 665, 674, 794
HpyCH4III	ACNGT	2 cut(s)	203, 347
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	5 cut(s)	374, 496, 773, 778, 804
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	5 cut(s)	120, 450, 572, 744, 826
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	6 cut(s)	307, 541, 556, 601, 705, 811
HspAI	GCGC	1 cut(s)	460
KpnI	GGTACC	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	4 cut(s)	173, 235, 582, 614
Lsp1109I	GCAGC	4 cut(s)	358, 386, 520, 757
LweI	GCATC	4 cut(s)	70, 132, 453, 813
MaeI	CTAG	4 cut(s)	414, 503, 510, 861
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	1 cut(s)	637
MalI	GATC	1 cut(s)	435
MbiI	CCGCTC	1 cut(s)	454
MboI	GATC	1 cut(s)	433
MboII	GAAGA	5 cut(s)	126, 429, 648, 680, 767
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	48, 85, 154, 354, 361, 831
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	152, 227
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	6 cut(s)	26, 114, 159, 171, 209, 389
MspR9I	CCNGG	3 cut(s)	26, 115, 233
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	2 cut(s)	26, 115
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	6 cut(s)	307, 541, 556, 601, 705, 811
NlaIV	GGNNCC	3 cut(s)	169, 200, 578
NmeAIII	GCCGAG	1 cut(s)	488
PaeR7I	CTCGAG	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	483
PinAI	ACCGGT	1 cut(s)	208
PkrI	GCNGC	5 cut(s)	184, 373, 376, 535, 772
Ppu21I	YACGTR	1 cut(s)	562
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	3 cut(s)	169, 200, 578
PspPI	GGNCC	1 cut(s)	206
PspXI	VCTCGAGB	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	152, 227
SatI	GCNGC	5 cut(s)	183, 372, 375, 534, 771
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	1 cut(s)	206
ScrFI	CCNGG	3 cut(s)	26, 115, 233
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	4 cut(s)	70, 132, 453, 813
SfcI	CTRYAG	2 cut(s)	372, 624
Sfr274I	CTCGAG	1 cut(s)	41
SinI	GGWCC	1 cut(s)	206
SlaI	CTCGAG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SpeI	ACTAGT	1 cut(s)	502
Sse9I	AATT	6 cut(s)	48, 85, 154, 354, 361, 831
SsiI	CCGC	5 cut(s)	183, 192, 289, 409, 454
SspMI	CTAG	4 cut(s)	414, 503, 510, 861
StyD4I	CCNGG	3 cut(s)	24, 113, 231
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	2 cut(s)	203, 347
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	4 cut(s)	42, 137, 295, 716
TasI	AATT	6 cut(s)	48, 85, 154, 354, 361, 831
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	1 cut(s)	483
Tru1I	TTAA	2 cut(s)	152, 227
Tru9I	TTAA	2 cut(s)	152, 227
TscAI	CASTG	1 cut(s)	825
TseI	GCWGC	4 cut(s)	371, 374, 533, 770
TspDTI	ATGAA	4 cut(s)	312, 561, 882, 896
TspGWI	ACGGA	4 cut(s)	117, 120, 539, 656
TspRI	CASTG	1 cut(s)	825
VpaK11BI	GGWCC	1 cut(s)	206
XagI	CCTNNNNNAGG	1 cut(s)	236
XapI	RAATTY	2 cut(s)	48, 154
XhoI	CTCGAG	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	4 cut(s)	414, 503, 510, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.