Prupe.6G343400_v2.0.a1

Transcription factor UNE12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0002134
Physical Location & Seq
Forward (+)
29555806 .. 29561873
6068 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G343400.1

Sequence Viewer

Length: 1029 bp
ATGGCGGGAAATCCGCCTGAGGGACTTGGAGACGATTTCTTTGAGCAGATCTTGGCGGTGCCACCGTCTTATAGTACTGGTGGTGCTGACTCAGCTGGTGGTGGGTATGGAGATGTGGGGTCCATGCCCATGGTGCTGCAGCTAGGCTCTGGTGGGTCTTCTTCAGCTGGTGGAGGTGGTGGTGGTGGTTCTGGTGGTGGAGGGTACAGAGGAGTTGGGATGGGGATGGGTATGCCTCTGGGGTTAAATTTGGAGCAGGGAGGGTTTATTGGGCAAGAGAGGTTCAGAGAACTGAGAGAAGAAGTTGAAGCCAATACTAATAACAATATTAACACTCCCAATGTTTCTGCTTCTGTCAGCTCTGCAATGAATGAAAGAGATTCTGTTCATATGACAAATTTGTTTCCAGCGTTTGGACACTTGCAAAATCACTCACTCCGGCCAACGCCACCCCCTCCGCAACCTCACCAGTTTCATAGCCAACCATCACCAGGGCCAGTTGCTGCTGTCCATCACCCTCCTGCTATCCGCCCAAGGGTCCGAGCAAGACGTGGCCAAGCAACAGATCCCCACAGTATTGCTGAGCGGTTACGCCGGGAAAGAATTGCAGAAAGAATGAAGGCTTTGCAGGAATTGGTACCCAGTTGTAACAAGACAGATAGGGCAGCTATGCTTGACGAAATTGTGGACTATGTGAAATTTCTAAGGCTCCAAGTGAAGGTATTGAGCATGAGTAGACTTGGGGGAGCAGGTGCAGTGGCTCAGCTTGTTGCTGATGTACCCCTATCAGCAGTCGAGGGAGAGGGCATTGAAGGAGGAACCAATCAACAAGCATGGGAGAAGTGGTCTAATGATGGAACAGAGCAACAAGTAGCTAAGCTGATGGAGGAGGATGTAGGAGCTGCCATGCAATTCCTTCAGGCCAAGGCACTCTGCATCATGCCAATATCACTTGCCCCTGCGATCTTCCGGACACATCAACCGGACGCAACGACACTGGTCAAGCCAGAATCAAACTCCTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

343

Amino Acids

36.02

Weight (kDa)

5.74

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 740
Acc36I ACCTGC 1 cut(s) 740
Acc65I GGTACC 1 cut(s) 637
AccB1I GGYRCC 2 cut(s) 58, 637
AccB7I CCANNNNNTGG 1 cut(s) 413
AccBSI CCGCTC 1 cut(s) 586
AccI GTMKAC 1 cut(s) 736
AccIII TCCGGA 1 cut(s) 969
AciI CCGC 6 cut(s) 5, 14, 56, 458, 529, 586
AclWI GGATC 1 cut(s) 560
AcoI YGGCCR 2 cut(s) 440, 553
AcsI RAATTY 3 cut(s) 247, 397, 698
AcuI CTGAAG 2 cut(s) 147, 902
AfaI GTAC 4 cut(s) 76, 206, 639, 780
AfiI CCNNNNNNNGG 5 cut(s) 20, 413, 491, 535, 718
AgsI TTSAA 2 cut(s) 308, 812
AjiI CACGTC 1 cut(s) 551
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 9 cut(s) 95, 142, 167, 360, 668, 766, 875, 880, 902
AluI AGCT 9 cut(s) 95, 142, 167, 360, 668, 766, 875, 880, 902
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 1 cut(s) 560
AlwNI CAGNNNCTG 1 cut(s) 503
Aor13HI TCCGGA 1 cut(s) 969
AoxI GGCC 4 cut(s) 440, 494, 553, 921
ApeKI GCWGC 5 cut(s) 136, 139, 503, 665, 902
ApoI RAATTY 3 cut(s) 247, 397, 698
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
Asp718I GGTACC 1 cut(s) 637
AspS9I GGNCC 3 cut(s) 120, 494, 538
AsuC2I CCSGG 1 cut(s) 596
AsuHPI GGTGA 3 cut(s) 458, 480, 506
AvaII GGWCC 2 cut(s) 120, 538
AxyI CCTNAGG 1 cut(s) 18
BalI TGGCCA 1 cut(s) 555
BanI GGYRCC 2 cut(s) 58, 637
BbsI GAAGAC 1 cut(s) 150
BbvI GCAGC 5 cut(s) 123, 151, 490, 677, 889
BccI CCATC 6 cut(s) 214, 220, 493, 519, 848, 877
BciT130I CCWGG 1 cut(s) 492
BcnI CCSGG 1 cut(s) 596
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 143
BfmI CTRYAG 1 cut(s) 137
BfuAI ACCTGC 1 cut(s) 740
BglII AGATCT 1 cut(s) 48
BisI GCNGC 5 cut(s) 137, 140, 504, 666, 903
BlpI GCTNAGC 3 cut(s) 582, 762, 876
BlsI GCNGC 5 cut(s) 138, 141, 505, 667, 904
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 492, 596
Bme18I GGWCC 2 cut(s) 120, 538
BmgBI CACGTC 1 cut(s) 551
BmgT120I GGNCC 3 cut(s) 120, 494, 538
BmiI GGNNCC 6 cut(s) 60, 121, 539, 639, 710, 820
BmrFI CCNGG 2 cut(s) 492, 596
BmrI ACTGGG 1 cut(s) 636
BmsI GCATC 1 cut(s) 945
BmuI ACTGGG 1 cut(s) 636
BoxI GACNNNNGTC 1 cut(s) 998
BpiI GAAGAC 1 cut(s) 150
Bpu1102I GCTNAGC 3 cut(s) 582, 762, 876
BpuMI CCSGG 1 cut(s) 596
BsaJI CCNNGG 4 cut(s) 129, 491, 533, 924
BsaWI WCCGGW 2 cut(s) 969, 982
BsaXI ACNNNNNCTCC 2 cut(s) 830, 860
Bsc4I CCNNNNNNNGG 5 cut(s) 20, 413, 491, 535, 718
Bse1I ACTGG 5 cut(s) 82, 469, 497, 642, 1002
Bse21I CCTNAGG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 372
BseAI TCCGGA 1 cut(s) 969
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 4 cut(s) 129, 491, 533, 924
BseGI GGATG 3 cut(s) 225, 231, 898
BseLI CCNNNNNNNGG 5 cut(s) 20, 413, 491, 535, 718
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 5 cut(s) 9, 105, 284, 573, 776
BseNI ACTGG 5 cut(s) 82, 469, 497, 642, 1002
BseRI GAGGAG 3 cut(s) 225, 902, 1009
BseXI GCAGC 5 cut(s) 123, 151, 490, 677, 889
BsgI GTGCAG 1 cut(s) 774
BshFI GGCC 4 cut(s) 442, 496, 555, 923
BshNI GGYRCC 2 cut(s) 58, 637
BsiSI CCGG 4 cut(s) 439, 595, 970, 983
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 5 cut(s) 20, 413, 491, 535, 718
BsmAI GTCTC 1 cut(s) 24
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 36
BsnI GGCC 4 cut(s) 442, 496, 555, 923
Bsp13I TCCGGA 1 cut(s) 969
Bsp143I GATC 3 cut(s) 48, 565, 963
Bsp1720I GCTNAGC 3 cut(s) 582, 762, 876
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 6 cut(s) 5, 14, 56, 458, 529, 586
BspANI GGCC 4 cut(s) 442, 496, 555, 923
BspCNI CTCAG 5 cut(s) 10, 104, 285, 574, 775
BspEI TCCGGA 1 cut(s) 969
BspLI GGNNCC 6 cut(s) 60, 121, 539, 639, 710, 820
BspMAI CTGCAG 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 740
BspPI GGATC 1 cut(s) 560
BspT107I GGYRCC 2 cut(s) 58, 637
BsrBI CCGCTC 1 cut(s) 586
BsrDI GCAATG 1 cut(s) 372
BsrI ACTGG 5 cut(s) 82, 469, 497, 642, 1002
BssECI CCNNGG 4 cut(s) 129, 491, 533, 924
BssMI GATC 3 cut(s) 48, 565, 963
BssT1I CCWWGG 3 cut(s) 129, 533, 924
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 2 cut(s) 66, 575
BstDEI CTNAG 7 cut(s) 18, 91, 293, 582, 704, 762, 876
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 3 cut(s) 225, 231, 898
BstKTI GATC 3 cut(s) 51, 568, 966
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 3 cut(s) 48, 565, 963
BstMWI GCNNNNNNNGC 2 cut(s) 92, 133
BstNI CCWGG 1 cut(s) 492
BstPAI GACNNNNGTC 1 cut(s) 998
BstSCI CCNGG 2 cut(s) 490, 594
BstSFI CTRYAG 1 cut(s) 137
BstV1I GCAGC 5 cut(s) 123, 151, 490, 677, 889
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 2 cut(s) 48, 565
BstXI CCANNNNNNTGG 1 cut(s) 130
BstYI RGATCY 2 cut(s) 48, 565
Bsu36I CCTNAGG 1 cut(s) 18
BsuRI GGCC 4 cut(s) 442, 496, 555, 923
BtgI CCRYGG 1 cut(s) 129
BtrI CACGTC 1 cut(s) 551
BtsCI GGATG 3 cut(s) 225, 231, 898
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 2 cut(s) 762, 995
BveI ACCTGC 1 cut(s) 740
CaiI CAGNNNCTG 1 cut(s) 503
Cfr13I GGNCC 3 cut(s) 120, 494, 538
CseI GACGC 1 cut(s) 995
Csp6I GTAC 4 cut(s) 75, 205, 638, 779
CviAII CATG 6 cut(s) 124, 130, 730, 834, 907, 940
CviQI GTAC 4 cut(s) 75, 205, 638, 779
DdeI CTNAG 7 cut(s) 18, 91, 293, 582, 704, 762, 876
DpnI GATC 3 cut(s) 50, 567, 965
DpnII GATC 3 cut(s) 48, 565, 963
EaeI YGGCCR 2 cut(s) 440, 553
EciI GGCGGA 1 cut(s) 518
Eco130I CCWWGG 3 cut(s) 129, 533, 924
Eco47I GGWCC 2 cut(s) 120, 538
Eco57I CTGAAG 2 cut(s) 147, 902
Eco81I CCTNAGG 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 490
EcoT14I CCWWGG 3 cut(s) 129, 533, 924
ErhI CCWWGG 3 cut(s) 129, 533, 924
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 6 cut(s) 127, 133, 733, 837, 910, 943
FaqI GGGAC 1 cut(s) 36
FatI CATG 6 cut(s) 123, 129, 729, 833, 906, 939
FauNDI CATATG 1 cut(s) 390
FblI GTMKAC 1 cut(s) 736
Fnu4HI GCNGC 5 cut(s) 137, 140, 504, 666, 903
FokI GGATG 3 cut(s) 232, 238, 905
Fsp4HI GCNGC 5 cut(s) 137, 140, 504, 666, 903
FspBI CTAG 1 cut(s) 143
GluI GCNGC 5 cut(s) 137, 140, 504, 666, 903
HaeIII GGCC 4 cut(s) 442, 496, 555, 923
HapII CCGG 4 cut(s) 439, 595, 970, 983
HgaI GACGC 1 cut(s) 995
Hin1II CATG 6 cut(s) 127, 133, 733, 837, 910, 943
HinfI GANTC 3 cut(s) 89, 380, 1010
HpaII CCGG 4 cut(s) 439, 595, 970, 983
HphI GGTGA 3 cut(s) 458, 480, 506
Hpy166II GTNNAC 2 cut(s) 688, 737
Hpy188I TCNGA 2 cut(s) 287, 542
Hpy188III TCNNGA 1 cut(s) 970
Hpy8I GTNNAC 2 cut(s) 688, 737
HpyAV CCTTC 4 cut(s) 613, 712, 806, 926
HpyCH4III ACNGT 2 cut(s) 66, 575
HpyCH4IV ACGT 1 cut(s) 550
HpyCH4V TGCA 8 cut(s) 139, 365, 424, 608, 628, 755, 910, 936
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 133
HpyF3I CTNAG 7 cut(s) 18, 91, 293, 582, 704, 762, 876
HpySE526I ACGT 1 cut(s) 550
Hsp92II CATG 6 cut(s) 127, 133, 733, 837, 910, 943
Kpn2I TCCGGA 1 cut(s) 969
KpnI GGTACC 1 cut(s) 641
Kzo9I GATC 3 cut(s) 48, 565, 963
LmnI GCTCC 4 cut(s) 253, 714, 746, 899
Lsp1109I GCAGC 5 cut(s) 123, 151, 490, 677, 889
LweI GCATC 1 cut(s) 945
MaeI CTAG 1 cut(s) 143
MaeII ACGT 1 cut(s) 550
MaeIII GTNAC 2 cut(s) 588, 647
MalI GATC 3 cut(s) 50, 567, 965
MbiI CCGCTC 1 cut(s) 586
MboI GATC 3 cut(s) 48, 565, 963
MboII GAAGA 5 cut(s) 150, 153, 311, 958, 1014
MflI RGATCY 2 cut(s) 48, 565
MlsI TGGCCA 1 cut(s) 555
MluCI AATT 7 cut(s) 247, 397, 603, 632, 681, 698, 911
MluNI TGGCCA 1 cut(s) 555
MlyI GAGTC 1 cut(s) 83
Mox20I TGGCCA 1 cut(s) 555
MroI TCCGGA 1 cut(s) 969
MscI TGGCCA 1 cut(s) 555
MseI TTAA 2 cut(s) 245, 330
MslI CAYNNNNRTG 1 cut(s) 128
Msp20I TGGCCA 1 cut(s) 555
MspA1I CMGCKG 2 cut(s) 95, 167
MspI CCGG 4 cut(s) 439, 595, 970, 983
MspR9I CCNGG 2 cut(s) 492, 596
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 2 cut(s) 92, 133
NciI CCSGG 1 cut(s) 596
NcoI CCATGG 1 cut(s) 129
NdeI CATATG 1 cut(s) 390
NdeII GATC 3 cut(s) 48, 565, 963
NlaIII CATG 6 cut(s) 127, 133, 733, 837, 910, 943
NlaIV GGNNCC 6 cut(s) 60, 121, 539, 639, 710, 820
PaqCI CACCTGC 1 cut(s) 740
PfeI GAWTC 2 cut(s) 380, 1010
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 5 cut(s) 138, 141, 505, 667, 904
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PshAI GACNNNNGTC 1 cut(s) 998
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 6 cut(s) 60, 121, 539, 639, 710, 820
PspPI GGNCC 3 cut(s) 120, 494, 538
PstI CTGCAG 1 cut(s) 141
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 2 cut(s) 48, 565
PvuII CAGCTG 2 cut(s) 95, 167
RsaI GTAC 4 cut(s) 76, 206, 639, 780
RsaNI GTAC 4 cut(s) 75, 205, 638, 779
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 2 cut(s) 245, 330
SatI GCNGC 5 cut(s) 137, 140, 504, 666, 903
Sau3AI GATC 3 cut(s) 48, 565, 963
Sau96I GGNCC 3 cut(s) 120, 494, 538
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 2 cut(s) 492, 596
SfaNI GCATC 1 cut(s) 945
SfcI CTRYAG 1 cut(s) 137
SinI GGWCC 2 cut(s) 120, 538
SmiMI CAYNNNNRTG 1 cut(s) 128
Sse9I AATT 7 cut(s) 247, 397, 603, 632, 681, 698, 911
SsiI CCGC 6 cut(s) 5, 14, 56, 458, 529, 586
SspI AATATT 1 cut(s) 328
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 2 cut(s) 490, 594
StyI CCWWGG 3 cut(s) 129, 533, 924
TaaI ACNGT 2 cut(s) 66, 575
TaiI ACGT 1 cut(s) 553
TaqI TCGA 1 cut(s) 795
TasI AATT 7 cut(s) 247, 397, 603, 632, 681, 698, 911
TatI WGTACW 1 cut(s) 74
TfiI GAWTC 2 cut(s) 380, 1010
Tru1I TTAA 2 cut(s) 245, 330
Tru9I TTAA 2 cut(s) 245, 330
TscAI CASTG 2 cut(s) 762, 1002
TseI GCWGC 5 cut(s) 136, 139, 503, 665, 902
TspDTI ATGAA 6 cut(s) 377, 383, 387, 464, 632, 1014
TspRI CASTG 2 cut(s) 762, 1002
Van91I CCANNNNNTGG 1 cut(s) 413
VpaK11BI GGWCC 2 cut(s) 120, 538
XapI RAATTY 3 cut(s) 247, 397, 698
XmiI GTMKAC 1 cut(s) 736
XspI CTAG 1 cut(s) 143
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.