Rorug02G0631400

Transcription factor UNE12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002134
Physical Location & Seq
Forward (+)
74620618 .. 74624366
3749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0631400.1

Sequence Viewer

Length: 1107 bp
ATGGGTGGCGTGACGTCATCCATGGCGGCCAAGTTCGCCTTTTTCCCGCCGAACCCGCCGTCGTACAAGCTCATCACCGACGAGCTGACGGGGCTGTTGCTGCTGAGCCCATTTCCGCACAGGGAAAACGTGGAGGTTCTGAAGCTGCCGACTCGGCGCGGCACTGAGGTGGTGGCTATTTACATTAGGCACCCTTTGGCCACTTCTACTCTGCTTTACTCTCACGGCAACGCCGCCGATCTGGGCCAGATGTATGAGCTCTTCATCGAGCTCAGCATCCATTTGAGGGTTAATCTCATGGGGTATGACTATTCAGGGTATGGGCAATCATCTGGAAAGGCAAGTGAGCAGAATACATACGCAGATATTGAAGCTGCATATAAGTGTCTTGAAGAAAGCTATGGTACTAAGCAGGAAGATATCATTCTCTATGGTCAATCTGTTGGAAGTGGCCCGACTTTGGATCTTGCTACTCGGCTGCCTCAGTTAAGAGCAGTTGTTCTGCACAGTCCCATCCTATCTGGTTTAAGAGTCATGTATCCTGTAAAGCGTACATACTGGTTTGACATTTATAAGAATATTGATAAGATTCCACTGGTCAATTGTCCTGTTCTCATCATTCATGGAACTGCAGATGAAGTAGTTGACTGCTCTCATGGCAAGCAACTGTGGGAGTTATGTAAAGAGAAGTATGAACCACTATGGCTTAAAGGAGGCAACCACTGTGATATAGAACTGTATCCCGAGTACATCAGGCATCTCAAGAAGTTCATTTCAACTGTCGAGAAGTCTCCTTCCCAAAGATACAGTTCTAGGAGAAGCACAGACCAGTTTGAGCAGCCTCGGAAGAGTACTGATGTTTACGAAGTTTCTAGAAAGAGCACTGATCGAAGAGATAAACCAAAGAAGAGCACTGATAGACCTGAGAAACTGAAAAACCAGTTCATTAGTGCTGATAAACTAGAAAAATTAAAAGTATCCTTTGACCATATGGACAGGTCTCGGAGAAGCGTGGACTGCCATGAGAAGTCCAGAAAAAGTGTCGACCACCAACTGGATAGAGCACGGAAGAGTGTGGATCGATTGGATAGAATACGGAGTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

368

Amino Acids

42.15

Weight (kDa)

9.05

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 71 - 175 3.4e-07 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 573
AatII GACGTC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 189
AccB7I CCANNNNNTGG 1 cut(s) 1054
AccI GTMKAC 1 cut(s) 1044
AccII CGCG 1 cut(s) 159
AciI CCGC 6 cut(s) 26, 47, 56, 116, 159, 234
AclWI GGATC 2 cut(s) 471, 1086
AcoI YGGCCR 2 cut(s) 27, 198
AcuI CTGAAG 1 cut(s) 161
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 5 cut(s) 65, 406, 553, 749, 853
AfiI CCNNNNNNNGG 3 cut(s) 286, 460, 1054
AgsI TTSAA 3 cut(s) 371, 392, 777
AleI CACNNNNGTG 1 cut(s) 167
AluBI AGCT 7 cut(s) 70, 85, 145, 259, 271, 374, 399
AluI AGCT 7 cut(s) 70, 85, 145, 259, 271, 374, 399
Alw21I GWGCWC 5 cut(s) 261, 273, 884, 914, 1066
Alw26I GTCTC 2 cut(s) 795, 1005
AlwI GGATC 2 cut(s) 471, 1086
Ama87I CYCGRG 1 cut(s) 743
AoxI GGCC 4 cut(s) 27, 198, 244, 451
ApeKI GCWGC 5 cut(s) 100, 145, 374, 478, 838
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 2 cut(s) 244, 452
AsuHPI GGTGA 1 cut(s) 67
AvaI CYCGRG 1 cut(s) 743
BalI TGGCCA 1 cut(s) 200
BanI GGYRCC 1 cut(s) 189
BanII GRGCYC 3 cut(s) 110, 261, 273
BarI GAAGNNNNNNTAC 2 cut(s) 245, 277
Bbv12I GWGCWC 5 cut(s) 261, 273, 884, 914, 1066
BbvI GCAGC 5 cut(s) 87, 132, 361, 465, 850
BccI CCATC 1 cut(s) 521
BceAI ACGGC 2 cut(s) 43, 241
BciVI GTATCC 3 cut(s) 549, 750, 988
BcoDI GTCTC 2 cut(s) 795, 1005
BfaI CTAG 3 cut(s) 813, 873, 962
BfmI CTRYAG 1 cut(s) 630
BfuI GTATCC 3 cut(s) 549, 750, 988
BglI GCCNNNNNGGC 1 cut(s) 154
BisI GCNGC 8 cut(s) 27, 101, 146, 160, 234, 375, 479, 839
BlpI GCTNAGC 2 cut(s) 104, 272
BlsI GCNGC 8 cut(s) 28, 102, 147, 161, 235, 376, 480, 840
BmcAI AGTACT 1 cut(s) 853
BmeT110I CYCGRG 1 cut(s) 743
BmgT120I GGNCC 2 cut(s) 244, 452
BmiI GGNNCC 1 cut(s) 191
BmsI GCATC 2 cut(s) 285, 766
Bpu1102I GCTNAGC 2 cut(s) 104, 272
BpuEI CTTGAG 1 cut(s) 746
Bsa29I ATCGAT 1 cut(s) 1081
BsaHI GRCGYC 1 cut(s) 14
BsaI GGTCTC 1 cut(s) 1005
BsaJI CCNNGG 2 cut(s) 21, 842
Bsc4I CCNNNNNNNGG 3 cut(s) 286, 460, 1054
Bse1I ACTGG 5 cut(s) 563, 600, 829, 940, 1059
BseCI ATCGAT 1 cut(s) 1081
BseDI CCNNGG 2 cut(s) 21, 842
BseGI GGATG 3 cut(s) 17, 276, 513
BseLI CCNNNNNNNGG 3 cut(s) 286, 460, 1054
BseMII CTCAG 5 cut(s) 95, 156, 286, 497, 915
BseNI ACTGG 5 cut(s) 563, 600, 829, 940, 1059
BseXI GCAGC 5 cut(s) 87, 132, 361, 465, 850
BsgI GTGCAG 1 cut(s) 488
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 4 cut(s) 29, 200, 246, 453
BshNI GGYRCC 1 cut(s) 189
BshVI ATCGAT 1 cut(s) 1081
BsiHKAI GWGCWC 5 cut(s) 261, 273, 884, 914, 1066
BsiHKCI CYCGRG 1 cut(s) 743
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 3 cut(s) 286, 460, 1054
BsmAI GTCTC 2 cut(s) 795, 1005
BsmFI GGGAC 1 cut(s) 495
BsnI GGCC 4 cut(s) 29, 200, 246, 453
Bso31I GGTCTC 1 cut(s) 1005
BsoBI CYCGRG 1 cut(s) 743
Bsp1286I GDGCHC 6 cut(s) 110, 261, 273, 884, 914, 1066
Bsp143I GATC 4 cut(s) 238, 463, 886, 1078
Bsp1720I GCTNAGC 2 cut(s) 104, 272
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 6 cut(s) 26, 47, 56, 116, 159, 234
BspANI GGCC 4 cut(s) 29, 200, 246, 453
BspCNI CTCAG 5 cut(s) 96, 157, 285, 496, 916
BspDI ATCGAT 1 cut(s) 1081
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 191
BspMAI CTGCAG 1 cut(s) 634
BspPI GGATC 2 cut(s) 471, 1086
BspQI GCTCTTC 2 cut(s) 266, 902
BspT107I GGYRCC 1 cut(s) 189
BspTNI GGTCTC 1 cut(s) 1005
BsrI ACTGG 5 cut(s) 563, 600, 829, 940, 1059
BssECI CCNNGG 2 cut(s) 21, 842
BssMI GATC 4 cut(s) 238, 463, 886, 1078
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 21
Bst4CI ACNGT 6 cut(s) 509, 669, 725, 738, 781, 809
Bst6I CTCTTC 5 cut(s) 266, 842, 886, 902, 1064
BstACI GRCGYC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 662
BstDEI CTNAG 6 cut(s) 104, 165, 272, 408, 483, 924
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 3 cut(s) 17, 276, 513
BstFNI CGCG 1 cut(s) 159
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 4 cut(s) 241, 466, 889, 1081
BstMAI GTCTC 2 cut(s) 795, 1005
BstMBI GATC 4 cut(s) 238, 463, 886, 1078
BstMWI GCNNNNNNNGC 7 cut(s) 35, 55, 91, 100, 154, 657, 1017
BstSFI CTRYAG 1 cut(s) 630
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 5 cut(s) 87, 132, 361, 465, 850
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
Bsu15I ATCGAT 1 cut(s) 1081
BsuI GTATCC 3 cut(s) 549, 750, 988
BsuRI GGCC 4 cut(s) 29, 200, 246, 453
BsuTUI ATCGAT 1 cut(s) 1081
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 3 cut(s) 17, 276, 513
BtsIMutI CAGTG 5 cut(s) 162, 593, 721, 882, 912
Cac8I GCNNGC 1 cut(s) 662
CfoI GCGC 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 244, 452
ClaI ATCGAT 1 cut(s) 1081
Csp6I GTAC 5 cut(s) 64, 405, 552, 748, 852
CviAII CATG 6 cut(s) 22, 298, 535, 623, 656, 1022
CviQI GTAC 5 cut(s) 64, 405, 552, 748, 852
DdeI CTNAG 6 cut(s) 104, 165, 272, 408, 483, 924
DpnI GATC 4 cut(s) 240, 465, 888, 1080
DpnII GATC 4 cut(s) 238, 463, 886, 1078
EaeI YGGCCR 2 cut(s) 27, 198
Eam1104I CTCTTC 5 cut(s) 266, 842, 886, 902, 1064
EarI CTCTTC 5 cut(s) 266, 842, 886, 902, 1064
Ecl136II GAGCTC 2 cut(s) 259, 271
Eco130I CCWWGG 1 cut(s) 21
Eco24I GRGCYC 3 cut(s) 110, 261, 273
Eco31I GGTCTC 1 cut(s) 1005
Eco32I GATATC 1 cut(s) 421
Eco53kI GAGCTC 2 cut(s) 259, 271
Eco57I CTGAAG 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 743
EcoICRI GAGCTC 2 cut(s) 259, 271
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 21
EcoT38I GRGCYC 3 cut(s) 110, 261, 273
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 6 cut(s) 25, 301, 538, 626, 659, 1025
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FaqI GGGAC 1 cut(s) 495
FatI CATG 6 cut(s) 21, 297, 534, 622, 655, 1021
FauI CCCGC 2 cut(s) 54, 63
FauNDI CATATG 1 cut(s) 990
FblI GTMKAC 1 cut(s) 1044
Fnu4HI GCNGC 8 cut(s) 27, 101, 146, 160, 234, 375, 479, 839
FokI GGATG 3 cut(s) 4, 263, 500
FriOI GRGCYC 3 cut(s) 110, 261, 273
Fsp4HI GCNGC 8 cut(s) 27, 101, 146, 160, 234, 375, 479, 839
FspBI CTAG 3 cut(s) 813, 873, 962
GlaI GCGC 1 cut(s) 158
GluI GCNGC 8 cut(s) 27, 101, 146, 160, 234, 375, 479, 839
HaeIII GGCC 4 cut(s) 29, 200, 246, 453
HhaI GCGC 1 cut(s) 159
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 6 cut(s) 25, 301, 538, 626, 659, 1025
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HincII GTYRAC 2 cut(s) 646, 1045
HindII GTYRAC 2 cut(s) 646, 1045
HinfI GANTC 3 cut(s) 151, 531, 589
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 4 cut(s) 646, 862, 1015, 1045
Hpy188I TCNGA 3 cut(s) 141, 846, 1005
Hpy188III TCNNGA 7 cut(s) 333, 389, 743, 763, 784, 873, 1032
Hpy8I GTNNAC 4 cut(s) 646, 862, 1015, 1045
Hpy99I CGWCG 2 cut(s) 64, 83
HpyAV CCTTC 1 cut(s) 804
HpyCH4III ACNGT 6 cut(s) 509, 669, 725, 738, 781, 809
HpyCH4IV ACGT 2 cut(s) 14, 129
HpyCH4V TGCA 3 cut(s) 377, 505, 632
HpyF10VI GCNNNNNNNGC 7 cut(s) 35, 55, 91, 100, 154, 657, 1017
HpyF3I CTNAG 6 cut(s) 104, 165, 272, 408, 483, 924
HpySE526I ACGT 2 cut(s) 14, 129
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 6 cut(s) 25, 301, 538, 626, 659, 1025
HspAI GCGC 1 cut(s) 157
Kzo9I GATC 4 cut(s) 238, 463, 886, 1078
LguI GCTCTTC 2 cut(s) 266, 902
Lsp1109I GCAGC 5 cut(s) 87, 132, 361, 465, 850
LweI GCATC 2 cut(s) 285, 766
MaeI CTAG 3 cut(s) 813, 873, 962
MaeII ACGT 2 cut(s) 14, 129
MaeIII GTNAC 1 cut(s) 10
MalI GATC 4 cut(s) 240, 465, 888, 1080
MboI GATC 4 cut(s) 238, 463, 886, 1078
MboII GAAGA 7 cut(s) 253, 404, 428, 859, 903, 919, 1081
MfeI CAATTG 1 cut(s) 601
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 6 cut(s) 110, 261, 273, 884, 914, 1066
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 2 cut(s) 601, 968
MluNI TGGCCA 1 cut(s) 200
MlyI GAGTC 2 cut(s) 145, 540
MmeI TCCRAC 1 cut(s) 424
MnlI CCTC 6 cut(s) 127, 160, 279, 492, 707, 852
Mox20I TGGCCA 1 cut(s) 200
MscI TGGCCA 1 cut(s) 200
MseI TTAA 5 cut(s) 291, 488, 527, 708, 971
MslI CAYNNNNRTG 2 cut(s) 167, 382
Msp20I TGGCCA 1 cut(s) 200
MunI CAATTG 1 cut(s) 601
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 7 cut(s) 35, 55, 91, 100, 154, 657, 1017
NcoI CCATGG 1 cut(s) 21
NdeI CATATG 1 cut(s) 990
NdeII GATC 4 cut(s) 238, 463, 886, 1078
NlaIII CATG 6 cut(s) 25, 301, 538, 626, 659, 1025
NlaIV GGNNCC 1 cut(s) 191
NmeAIII GCCGAG 2 cut(s) 133, 454
NmuCI GTSAC 1 cut(s) 10
OliI CACNNNNGTG 1 cut(s) 167
PciSI GCTCTTC 2 cut(s) 266, 902
PfeI GAWTC 1 cut(s) 589
PflMI CCANNNNNTGG 1 cut(s) 1054
PkrI GCNGC 8 cut(s) 28, 102, 147, 161, 235, 376, 480, 840
PleI GAGTC 2 cut(s) 145, 539
PpsI GAGTC 2 cut(s) 145, 539
PsiI TTATAA 1 cut(s) 573
Psp124BI GAGCTC 2 cut(s) 261, 273
PspN4I GGNNCC 1 cut(s) 191
PspPI GGNCC 2 cut(s) 244, 452
PstI CTGCAG 1 cut(s) 634
PsuI RGATCY 1 cut(s) 463
RsaI GTAC 5 cut(s) 65, 406, 553, 749, 853
RsaNI GTAC 5 cut(s) 64, 405, 552, 748, 852
RseI CAYNNNNRTG 2 cut(s) 167, 382
SacI GAGCTC 2 cut(s) 261, 273
SalI GTCGAC 1 cut(s) 1043
SapI GCTCTTC 2 cut(s) 266, 902
SaqAI TTAA 5 cut(s) 291, 488, 527, 708, 971
SatI GCNGC 8 cut(s) 27, 101, 146, 160, 234, 375, 479, 839
Sau3AI GATC 4 cut(s) 238, 463, 886, 1078
Sau96I GGNCC 2 cut(s) 244, 452
ScaI AGTACT 1 cut(s) 853
SchI GAGTC 2 cut(s) 145, 540
SduI GDGCHC 6 cut(s) 110, 261, 273, 884, 914, 1066
SfaNI GCATC 2 cut(s) 285, 766
SfcI CTRYAG 1 cut(s) 630
SmiMI CAYNNNNRTG 2 cut(s) 167, 382
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
Sse9I AATT 2 cut(s) 601, 968
SsiI CCGC 6 cut(s) 26, 47, 56, 116, 159, 234
SspI AATATT 1 cut(s) 580
SspMI CTAG 3 cut(s) 813, 873, 962
SstI GAGCTC 2 cut(s) 261, 273
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 6 cut(s) 509, 669, 725, 738, 781, 809
TaiI ACGT 2 cut(s) 17, 132
TaqI TCGA 5 cut(s) 267, 783, 889, 1044, 1081
TasI AATT 2 cut(s) 601, 968
TatI WGTACW 2 cut(s) 747, 851
TauI GCSGC 3 cut(s) 29, 162, 236
TfiI GAWTC 1 cut(s) 589
Tru1I TTAA 5 cut(s) 291, 488, 527, 708, 971
Tru9I TTAA 5 cut(s) 291, 488, 527, 708, 971
TscAI CASTG 5 cut(s) 169, 600, 728, 889, 919
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 5 cut(s) 100, 145, 374, 478, 838
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 6 cut(s) 253, 611, 651, 708, 760, 934
TspGWI ACGGA 1 cut(s) 1081
TspRI CASTG 5 cut(s) 169, 600, 728, 889, 919
Van91I CCANNNNNTGG 1 cut(s) 1054
XbaI TCTAGA 1 cut(s) 872
XmiI GTMKAC 1 cut(s) 1044
XspI CTAG 3 cut(s) 813, 873, 962
ZraI GACGTC 1 cut(s) 15
ZrmI AGTACT 1 cut(s) 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.