Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002134

Physical Location & Seq

Genomic Coordinates Reverse (-)

2345789 .. 2350386

Gene Structure 4598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41841

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCGGGCAATCCGCCTGAGGGACTCGGAGACGATTTCTTCGAGCAGATCATGGCCGTTCCTCAAACGTACAGCGGCTCCGGCTCTGCTGCTGAGTCAGCTGGTGGTGGCTATGGAGACGTGGGGTCCATGCCCATGGTGCTGCAGCTGGGCTCCGGAACCGGGTCTTCTTCTGGCTCCGGCGTCGGGTACAGAGGAGGAGTCGGGTCGGTTGGGATGGGTATGGGCATGCCTTTGGGTCTGAATTTGGAGCAGGGGTTTCTTGGACAAGACAGGTTCAGAGATGAAGTTGAACCCAACTCTAACACCAACAACAACAACGGTAACAGTTCTAATGAAAGAGATTCGGTTCACATGACGAGTTTGTTTCCGGCATTTGGACATTTGCAAAACCACTCTGTCCGGCCAACGCCGCCGCCTCCTCAGCCTCACCAGCAGTTTCATAGCCAACCAGCACCGGGGCCAGCTGCTGCTGCCCATCACCCTCCTGCTATCCGCCCAAGGGTCCGAGCAAGACGAGGTCAAGCAACAGATCCCCACAGTATTGCTGAGCGGTTACGCCGGGAAAGAATTGCAGAAAGAATGAAGGCTTTGCAGGAATTGGTACCTAGTTGTAACAAGACAGATAGGGCAGCTATGCTTGACGAAATCGTCGATTATGTGAAATTTTTAAGGCTCCAAGTAAAGGTTTTGAGCATGAGTAGACTTGGAGGAGCAGGTGCAGTGGCTCAGCTTGTAGCTGATGTACCCTTATCAGCAGTTGAGGGAGAGGGGATTGAAGGAGGAACCAATAATCAACAAGCATGGGAGAAGTGGTCAAATGATGGCACAGAGCAACAGGTAGCTAAGCTCATGGAAGAAGATGTAGGAGCTGCCATGCAATACCTTCAATCCAAGGCACTTTGCATCATGCCCATATCACTCGCTCCTGCAATTTTCCGGACACATCAGCCGGACGCAACGACAATGGTTAAGCCGGAATCACACAACTCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

332

Amino Acids

35.29

Weight (kDa)

5.81

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	180 - 225	1.1e-08	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	184 - 228	4.6e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02590 AT4G02590 AT4G02590
fragaria_vesca	FvH4_2g22560 FvH4_2g22560 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900
malus_domestica	MD04G1224700.v1.1 MD05G1206200.v1.1 MD10G1193200.v1.1 MD12G1241500.v1.1
prunus_persica	Prupe.6G343400_v2.0.a1 Prupe.6G343400_v2.0.a1 Prupe.8G232600_v2.0.a1
pyrus_communis	pycom04g19790 pycom10g16690 pycom12g22100
rosa_chinensis	RchiOBHm_Chr3g0451111 RchiOBHm_Chr6g0289601
rosa_laevigata	RLG00000012289 RLG00000025689
rosa_multiflora	Rmu_sc0005376.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428580 Rroxscaffold_7G00177820
rosa_rugosa	Rorug02G0631400 Rorug02G0631500 Rorug02G0631600 Rorug02G0631700 Rorug02G0631800 Rorug06G0205100
rosa_samantha	Rh3AG034400 Rh3BG034700 Rh3CG033400 Rh3DG034400 Rh6AG316600 Rh6BG323000 Rh6CG329600 Rh6DG315000
rosa_wichuraiana	Rw3G002500 Rw6G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	707
AasI	GACNNNNNNGTC	1 cut(s)	650
Acc36I	ACCTGC	1 cut(s)	707
Acc65I	GGTACC	1 cut(s)	604
AccB1I	GGYRCC	1 cut(s)	604
AccBSI	CCGCTC	1 cut(s)	553
AccI	GTMKAC	1 cut(s)	703
AccIII	TCCGGA	2 cut(s)	155, 939
AciI	CCGC	7 cut(s)	5, 14, 75, 413, 416, 496, 553
AclWI	GGATC	1 cut(s)	527
AcoI	YGGCCR	2 cut(s)	54, 404
AcsI	RAATTY	2 cut(s)	244, 665
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	4 cut(s)	71, 191, 606, 747
AfiI	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 377, 458, 502, 685
AgsI	TTSAA	3 cut(s)	293, 779, 890
AhdI	GACNNNNNGTC	1 cut(s)	124
AjiI	CACGTC	1 cut(s)	121
AluBI	AGCT	9 cut(s)	101, 148, 467, 635, 733, 740, 845, 850, 872
AluI	AGCT	9 cut(s)	101, 148, 467, 635, 733, 740, 845, 850, 872
Alw26I	GTCTC	2 cut(s)	24, 111
AlwI	GGATC	1 cut(s)	527
AlwNI	CAGNNNCTG	1 cut(s)	470
Aor13HI	TCCGGA	2 cut(s)	155, 939
AoxI	GGCC	3 cut(s)	54, 404, 461
ApeKI	GCWGC	8 cut(s)	89, 142, 145, 467, 470, 473, 632, 872
ApoI	RAATTY	2 cut(s)	244, 665
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
Asp718I	GGTACC	1 cut(s)	604
AspS9I	GGNCC	3 cut(s)	126, 461, 505
AsuC2I	CCSGG	3 cut(s)	163, 459, 563
AsuHPI	GGTGA	2 cut(s)	422, 473
AvaII	GGWCC	2 cut(s)	126, 505
AxyI	CCTNAGG	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	423
BbvI	GCAGC	8 cut(s)	76, 129, 157, 454, 457, 460, 644, 859
BccI	CCATC	3 cut(s)	211, 486, 818
BceAI	ACGGC	1 cut(s)	41
BcnI	CCSGG	3 cut(s)	163, 459, 563
BcoDI	GTCTC	2 cut(s)	24, 111
BfaI	CTAG	2 cut(s)	609, 997
BfmI	CTRYAG	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	707
BlpI	GCTNAGC	3 cut(s)	549, 729, 846
Bme1390I	CCNGG	3 cut(s)	163, 459, 563
Bme18I	GGWCC	2 cut(s)	126, 505
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	3 cut(s)	126, 461, 505
BmrFI	CCNGG	3 cut(s)	163, 459, 563
BmsI	GCATC	1 cut(s)	915
BpiI	GAAGAC	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	423
Bpu1102I	GCTNAGC	3 cut(s)	549, 729, 846
BpuMI	CCSGG	3 cut(s)	163, 459, 563
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	4 cut(s)	135, 458, 500, 894
BsaWI	WCCGGW	2 cut(s)	155, 939
BsaXI	ACNNNNNCTCC	6 cut(s)	62, 92, 242, 272, 800, 830
Bsc4I	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 377, 458, 502, 685
Bse21I	CCTNAGG	1 cut(s)	18
BseAI	TCCGGA	2 cut(s)	155, 939
BseDI	CCNNGG	4 cut(s)	135, 458, 500, 894
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 377, 458, 502, 685
BseMII	CTCAG	5 cut(s)	9, 84, 437, 540, 743
BseRI	GAGGAG	4 cut(s)	210, 213, 411, 726
BseXI	GCAGC	8 cut(s)	76, 129, 157, 454, 457, 460, 644, 859
BseYI	CCCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	741
BshFI	GGCC	3 cut(s)	56, 406, 463
BshNI	GGYRCC	1 cut(s)	604
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 377, 458, 502, 685
BsmAI	GTCTC	2 cut(s)	24, 111
BsmBI	CGTCTC	2 cut(s)	24, 111
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	3 cut(s)	56, 406, 463
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp13I	TCCGGA	2 cut(s)	155, 939
Bsp143I	GATC	2 cut(s)	48, 532
Bsp1720I	GCTNAGC	3 cut(s)	549, 729, 846
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	7 cut(s)	5, 14, 75, 413, 416, 496, 553
BspANI	GGCC	3 cut(s)	56, 406, 463
BspCNI	CTCAG	5 cut(s)	10, 85, 436, 541, 742
BspEI	TCCGGA	2 cut(s)	155, 939
BspMAI	CTGCAG	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	707
BspPI	GGATC	1 cut(s)	527
BspT107I	GGYRCC	1 cut(s)	604
BsrBI	CCGCTC	1 cut(s)	553
BssECI	CCNNGG	4 cut(s)	135, 458, 500, 894
BssMI	GATC	2 cut(s)	48, 532
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	3 cut(s)	135, 500, 894
Bst4CI	ACNGT	3 cut(s)	323, 329, 542
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	3 cut(s)	7, 230, 465
BstDEI	CTNAG	6 cut(s)	18, 93, 423, 549, 729, 846
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	51, 535
BstMAI	GTCTC	2 cut(s)	24, 111
BstMBI	GATC	2 cut(s)	48, 532
BstMWI	GCNNNNNNNGC	7 cut(s)	81, 98, 139, 412, 424, 433, 473
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	3 cut(s)	161, 457, 561
BstSFI	CTRYAG	1 cut(s)	143
BstV1I	GCAGC	8 cut(s)	76, 129, 157, 454, 457, 460, 644, 859
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	532
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	532
Bsu36I	CCTNAGG	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	56, 406, 463
BtgI	CCRYGG	1 cut(s)	135
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	1 cut(s)	729
BveI	ACCTGC	1 cut(s)	707
Cac8I	GCNNGC	3 cut(s)	7, 230, 465
CaiI	CAGNNNCTG	1 cut(s)	470
Cfr13I	GGNCC	3 cut(s)	126, 461, 505
CseI	GACGC	2 cut(s)	172, 965
Csp6I	GTAC	4 cut(s)	70, 190, 605, 746
CviQI	GTAC	4 cut(s)	70, 190, 605, 746
DdeI	CTNAG	6 cut(s)	18, 93, 423, 549, 729, 846
DpnI	GATC	2 cut(s)	50, 534
DpnII	GATC	2 cut(s)	48, 532
DrdI	GACNNNNNNGTC	1 cut(s)	650
DriI	GACNNNNNGTC	1 cut(s)	124
DseDI	GACNNNNNNGTC	1 cut(s)	650
EaeI	YGGCCR	2 cut(s)	54, 404
Eam1105I	GACNNNNNGTC	1 cut(s)	124
EciI	GGCGGA	1 cut(s)	485
Eco130I	CCWWGG	3 cut(s)	135, 500, 894
Eco24I	GRGCYC	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	126, 505
Eco81I	CCTNAGG	1 cut(s)	18
EcoT14I	CCWWGG	3 cut(s)	135, 500, 894
EcoT38I	GRGCYC	1 cut(s)	155
ErhI	CCWWGG	3 cut(s)	135, 500, 894
Esp3I	CGTCTC	2 cut(s)	24, 111
FaqI	GGGAC	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	703
FokI	GGATG	1 cut(s)	229
FriOI	GRGCYC	1 cut(s)	155
FspBI	CTAG	2 cut(s)	609, 997
GsaI	CCCAGC	1 cut(s)	152
HaeIII	GGCC	3 cut(s)	56, 406, 463
HgaI	GACGC	2 cut(s)	172, 965
Hin1I	GRCGYC	1 cut(s)	183
HinfI	GANTC	5 cut(s)	24, 95, 201, 344, 980
HphI	GGTGA	2 cut(s)	422, 473
Hpy166II	GTNNAC	2 cut(s)	352, 704
Hpy188I	TCNGA	4 cut(s)	29, 243, 281, 509
Hpy188III	TCNNGA	2 cut(s)	156, 940
Hpy8I	GTNNAC	2 cut(s)	352, 704
Hpy99I	CGWCG	2 cut(s)	188, 656
HpyAV	CCTTC	3 cut(s)	580, 773, 896
HpyCH4III	ACNGT	3 cut(s)	323, 329, 542
HpyCH4IV	ACGT	2 cut(s)	68, 120
HpyCH4V	TGCA	8 cut(s)	145, 388, 575, 595, 722, 880, 906, 932
HpyF10VI	GCNNNNNNNGC	7 cut(s)	81, 98, 139, 412, 424, 433, 473
HpyF3I	CTNAG	6 cut(s)	18, 93, 423, 549, 729, 846
HpySE526I	ACGT	2 cut(s)	68, 120
Hsp92I	GRCGYC	1 cut(s)	183
Kpn2I	TCCGGA	2 cut(s)	155, 939
KpnI	GGTACC	1 cut(s)	608
Kzo9I	GATC	2 cut(s)	48, 532
LmnI	GCTCC	8 cut(s)	83, 158, 182, 250, 681, 713, 869, 931
Lsp1109I	GCAGC	8 cut(s)	76, 129, 157, 454, 457, 460, 644, 859
LweI	GCATC	1 cut(s)	915
MaeI	CTAG	2 cut(s)	609, 997
MaeII	ACGT	2 cut(s)	68, 120
MaeIII	GTNAC	3 cut(s)	323, 555, 614
MalI	GATC	2 cut(s)	50, 534
MbiI	CCGCTC	1 cut(s)	553
MboI	GATC	2 cut(s)	48, 532
MboII	GAAGA	6 cut(s)	31, 159, 162, 869, 872, 984
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	5 cut(s)	244, 570, 599, 665, 933
MlyI	GAGTC	3 cut(s)	18, 104, 210
MroI	TCCGGA	2 cut(s)	155, 939
MseI	TTAA	2 cut(s)	671, 972
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	4 cut(s)	75, 101, 148, 467
MspR9I	CCNGG	3 cut(s)	163, 459, 563
MwoI	GCNNNNNNNGC	7 cut(s)	81, 98, 139, 412, 424, 433, 473
NciI	CCSGG	3 cut(s)	163, 459, 563
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	48, 532
NspI	RCATGY	1 cut(s)	232
PaeI	GCATGC	1 cut(s)	232
PaqCI	CACCTGC	1 cut(s)	707
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 651
PfeI	GAWTC	2 cut(s)	344, 980
PflFI	GACNNNGTC	1 cut(s)	519
PleI	GAGTC	3 cut(s)	18, 103, 209
PpsI	GAGTC	3 cut(s)	18, 103, 209
PspFI	CCCAGC	1 cut(s)	148
PspPI	GGNCC	3 cut(s)	126, 461, 505
PstI	CTGCAG	1 cut(s)	147
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	532
PsyI	GACNNNGTC	1 cut(s)	519
PvuII	CAGCTG	3 cut(s)	101, 148, 467
RsaI	GTAC	4 cut(s)	71, 191, 606, 747
RsaNI	GTAC	4 cut(s)	70, 190, 605, 746
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	671, 972
Sau3AI	GATC	2 cut(s)	48, 532
Sau96I	GGNCC	3 cut(s)	126, 461, 505
SchI	GAGTC	3 cut(s)	18, 104, 210
ScrFI	CCNGG	3 cut(s)	163, 459, 563
SduI	GDGCHC	1 cut(s)	155
SfaNI	GCATC	1 cut(s)	915
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	2 cut(s)	126, 505
SmiMI	CAYNNNNRTG	1 cut(s)	134
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	5 cut(s)	244, 570, 599, 665, 933
SsiI	CCGC	7 cut(s)	5, 14, 75, 413, 416, 496, 553
SspMI	CTAG	2 cut(s)	609, 997
StyD4I	CCNGG	3 cut(s)	161, 457, 561
StyI	CCWWGG	3 cut(s)	135, 500, 894
TaaI	ACNGT	3 cut(s)	323, 329, 542
TaiI	ACGT	2 cut(s)	71, 123
TaqI	TCGA	2 cut(s)	42, 654
TasI	AATT	5 cut(s)	244, 570, 599, 665, 933
TauI	GCSGC	3 cut(s)	78, 415, 418
TfiI	GAWTC	2 cut(s)	344, 980
Tru1I	TTAA	2 cut(s)	671, 972
Tru9I	TTAA	2 cut(s)	671, 972
TscAI	CASTG	1 cut(s)	729
TseI	GCWGC	8 cut(s)	89, 142, 145, 467, 470, 473, 632, 872
TspDTI	ATGAA	4 cut(s)	300, 351, 431, 599
TspRI	CASTG	1 cut(s)	729
Tth111I	GACNNNGTC	1 cut(s)	519
VpaK11BI	GGWCC	2 cut(s)	126, 505
XapI	RAATTY	2 cut(s)	244, 665
XceI	RCATGY	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	703
XspI	CTAG	2 cut(s)	609, 997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.