MD05G1206200.v1.1

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
33533127 .. 33537089
3963 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1206200.v1.1.491

Sequence Viewer

Length: 903 bp
ATGGCCAACAACCCCTCGGAGCCCCAGGCCGACGACTTCCTCGAGCAAATTCTCGGCCTCCCCAACTTTGCCTCCGCCGATGCTAATTTGGCGGGAAGCGACGGCGGTTTGGCCGGAGGACAGGTATCTCCGGCGTCTATGATGCTGCAGCTGAACTCCGTCGACGGGTCCGGCCACCTAGGCGGAGTTGGCGGTGGCGGTGGGTTCCATGGAGGGGTGTTTCCCTTGGGGTTGAGCTTGGAGCAGGGGAAAGCTGGGTTTTTGAAGCACGAGGAGGCTTCTGGGAGCGGGAAGCGGTTTCGAGACGACGTCGTTGATAGTCGAGTTTCATCTGTGAAAAATGTTTTCCATGGCCAACCTATTTCAAATACAGTTGCTGCAGCACCGCATCCACCAGCAATGCGACCAAGGGTGCGAGCTAGAAGAGGACAAGCCACAGATCCACACAGCATTGCCGAGCGGTTGCGCAGAGAAAGAATAGCAGAAAGAATCAGGGCGTTGCAGGAACTAGTTCCTAGCGTCAACAAGACGGATAGAGCTGCCATGCTTGATGAGATAATGGACTATGTGAAGTTCCTAAGGCTCCAAGTAAAGGTTTTGAGCATGAGTAGATTGGGCGGGGCTGGTGCTGTGGCACCACTTGTAACAGATATTCCACTATCTTCAGTTGAGGAAGAAGGCAGCGAAGGTGGTAGAAACCAACCGGCGTGGGATAAGTGGTCTAATGACGGCACAGAACGACAAGTAGCTAAGCTTATGGAAGACAACGTTGGGGCGGCAATGCAGTTCCTCCAATACAAGGCTCTCTGCATCATGCCTATCTCACTGGCCTCGGCAATCTACAACACACAACCTCCGGACACCTCTAGCGTTGTCAAGCCTGAAATGAACCCTCCTTCCTAA

Protein Analysis

301

Amino Acids

31.86

Weight (kDa)

5.9

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 149 - 194 1.9e-07 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 312
Acc16I TGCGCA 1 cut(s) 467
AccB1I GGYRCC 1 cut(s) 634
AccBSI CCGCTC 2 cut(s) 288, 460
AccI GTMKAC 1 cut(s) 162
AccIII TCCGGA 1 cut(s) 856
AclI AACGTT 1 cut(s) 768
AclWI GGATC 1 cut(s) 434
AcoI YGGCCR 4 cut(s) 3, 111, 172, 352
AcsI RAATTY 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 648
AcyI GRCGYC 2 cut(s) 134, 309
AfiI CCNNNNNNNGG 4 cut(s) 165, 214, 592, 799
AgsI TTSAA 2 cut(s) 265, 366
AhlI ACTAGT 1 cut(s) 508
AjnI CCWGG 1 cut(s) 24
AjuI GAANNNNNNNTTGG 2 cut(s) 753, 785
AloI GAACNNNNNNTCC 1 cut(s) 881
AluBI AGCT 7 cut(s) 151, 237, 254, 419, 539, 749, 754
AluI AGCT 7 cut(s) 151, 237, 254, 419, 539, 749, 754
Alw26I GTCTC 1 cut(s) 297
AlwI GGATC 1 cut(s) 434
AlwNI CAGNNNCTG 1 cut(s) 377
Ama87I CYCGRG 1 cut(s) 41
Aor13HI TCCGGA 1 cut(s) 856
AoxI GGCC 7 cut(s) 3, 27, 55, 111, 172, 352, 828
ApeKI GCWGC 6 cut(s) 145, 148, 377, 380, 539, 681
ApoI RAATTY 1 cut(s) 48
Asp700I GAANNNNTTC 1 cut(s) 510
AspA2I CCTAGG 1 cut(s) 178
AspLEI GCGC 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 168
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 1 cut(s) 168
AvrII CCTAGG 1 cut(s) 178
AxyI CCTNAGG 1 cut(s) 578
BalI TGGCCA 2 cut(s) 5, 354
BanI GGYRCC 1 cut(s) 634
BanII GRGCYC 1 cut(s) 24
BauI CACGAG 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 768
BbvI GCAGC 6 cut(s) 132, 160, 364, 392, 526, 693
BceAI ACGGC 2 cut(s) 118, 745
BciT130I CCWGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 297
BcuI ACTAGT 1 cut(s) 508
BfaI CTAG 5 cut(s) 179, 420, 509, 516, 867
BfmI CTRYAG 2 cut(s) 146, 378
BglI GCCNNNNNGGC 1 cut(s) 180
BisI GCNGC 7 cut(s) 146, 149, 378, 381, 540, 682, 777
BlnI CCTAGG 1 cut(s) 178
BlpI GCTNAGC 1 cut(s) 750
BlsI GCNGC 7 cut(s) 147, 150, 379, 382, 541, 683, 778
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 168
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 5 cut(s) 21, 169, 206, 584, 636
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 4 cut(s) 70, 132, 397, 819
BpiI GAAGAC 1 cut(s) 768
Bpu1102I GCTNAGC 1 cut(s) 750
BsaHI GRCGYC 2 cut(s) 134, 309
BsaJI CCNNGG 8 cut(s) 15, 24, 178, 208, 225, 349, 407, 831
BsaWI WCCGGW 1 cut(s) 856
BsaXI ACNNNNNCTCC 6 cut(s) 56, 86, 108, 138, 838, 868
Bsc4I CCNNNNNNNGG 4 cut(s) 165, 214, 592, 799
Bse118I RCCGGY 1 cut(s) 703
Bse1I ACTGG 1 cut(s) 831
Bse21I CCTNAGG 1 cut(s) 578
Bse3DI GCAATG 3 cut(s) 405, 450, 786
BseAI TCCGGA 1 cut(s) 856
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 8 cut(s) 15, 24, 178, 208, 225, 349, 407, 831
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 4 cut(s) 165, 214, 592, 799
BseMI GCAATG 3 cut(s) 405, 450, 786
BseNI ACTGG 1 cut(s) 831
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 6 cut(s) 132, 160, 364, 392, 526, 693
BseYI CCCAGC 1 cut(s) 254
BshFI GGCC 7 cut(s) 5, 29, 57, 113, 174, 354, 830
BshNI GGYRCC 1 cut(s) 634
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 5 cut(s) 114, 131, 171, 704, 857
BslI CCNNNNNNNGG 4 cut(s) 165, 214, 592, 799
BsmAI GTCTC 1 cut(s) 297
BsmBI CGTCTC 1 cut(s) 297
BsnI GGCC 7 cut(s) 5, 29, 57, 113, 174, 354, 830
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 24
Bsp13I TCCGGA 1 cut(s) 856
Bsp143I GATC 1 cut(s) 439
Bsp1720I GCTNAGC 1 cut(s) 750
Bsp19I CCATGG 2 cut(s) 208, 349
BspANI GGCC 7 cut(s) 5, 29, 57, 113, 174, 354, 830
BspEI TCCGGA 1 cut(s) 856
BspLI GGNNCC 5 cut(s) 21, 169, 206, 584, 636
BspMAI CTGCAG 2 cut(s) 150, 382
BspPI GGATC 1 cut(s) 434
BspT107I GGYRCC 1 cut(s) 634
BsrBI CCGCTC 2 cut(s) 288, 460
BsrDI GCAATG 3 cut(s) 405, 450, 786
BsrFI RCCGGY 1 cut(s) 703
BsrI ACTGG 1 cut(s) 831
BssAI RCCGGY 1 cut(s) 703
BssECI CCNNGG 8 cut(s) 15, 24, 178, 208, 225, 349, 407, 831
BssMI GATC 1 cut(s) 439
BssNI GRCGYC 2 cut(s) 134, 309
BssSI CACGAG 1 cut(s) 269
BssT1I CCWWGG 5 cut(s) 178, 208, 225, 349, 407
Bst2BI CACGAG 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 1 cut(s) 418
BstACI GRCGYC 2 cut(s) 134, 309
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 2 cut(s) 578, 750
BstDSI CCRYGG 2 cut(s) 208, 349
BstF5I GGATG 1 cut(s) 388
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 1 cut(s) 442
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 1 cut(s) 439
BstMWI GCNNNNNNNGC 3 cut(s) 89, 180, 189
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 2 cut(s) 146, 378
BstV1I GCAGC 6 cut(s) 132, 160, 364, 392, 526, 693
BstV2I GAAGAC 1 cut(s) 768
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
Bsu36I CCTNAGG 1 cut(s) 578
BsuRI GGCC 7 cut(s) 5, 29, 57, 113, 174, 354, 830
BtgI CCRYGG 2 cut(s) 208, 349
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 1 cut(s) 824
Cac8I GCNNGC 1 cut(s) 417
CaiI CAGNNNCTG 1 cut(s) 377
CfoI GCGC 1 cut(s) 468
Cfr10I RCCGGY 1 cut(s) 703
Cfr13I GGNCC 1 cut(s) 168
CseI GACGC 2 cut(s) 123, 508
CspCI CAANNNNNGTGG 2 cut(s) 689, 724
CviAII CATG 5 cut(s) 209, 350, 544, 604, 814
DdeI CTNAG 2 cut(s) 578, 750
DpnI GATC 1 cut(s) 441
DpnII GATC 1 cut(s) 439
EaeI YGGCCR 4 cut(s) 3, 111, 172, 352
Eam1104I CTCTTC 1 cut(s) 418
EarI CTCTTC 1 cut(s) 418
EciI GGCGGA 2 cut(s) 64, 198
Eco130I CCWWGG 5 cut(s) 178, 208, 225, 349, 407
Eco24I GRGCYC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 648
Eco81I CCTNAGG 1 cut(s) 578
Eco88I CYCGRG 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 24
EcoT14I CCWWGG 5 cut(s) 178, 208, 225, 349, 407
EcoT38I GRGCYC 1 cut(s) 24
ErhI CCWWGG 5 cut(s) 178, 208, 225, 349, 407
Esp3I CGTCTC 1 cut(s) 297
FaeI CATG 5 cut(s) 212, 353, 547, 607, 817
FaiI YATR 8 cut(s) 140, 210, 351, 545, 567, 605, 758, 815
FatI CATG 5 cut(s) 208, 349, 543, 603, 813
FauI CCCGC 3 cut(s) 85, 281, 611
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 7 cut(s) 146, 149, 378, 381, 540, 682, 777
FokI GGATG 1 cut(s) 375
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 7 cut(s) 146, 149, 378, 381, 540, 682, 777
FspBI CTAG 5 cut(s) 179, 420, 509, 516, 867
FspI TGCGCA 1 cut(s) 467
GlaI GCGC 1 cut(s) 467
GluI GCNGC 7 cut(s) 146, 149, 378, 381, 540, 682, 777
GsaI CCCAGC 1 cut(s) 258
HaeIII GGCC 7 cut(s) 5, 29, 57, 113, 174, 354, 830
HapII CCGG 5 cut(s) 114, 131, 171, 704, 857
HgaI GACGC 2 cut(s) 123, 508
HhaI GCGC 1 cut(s) 468
Hin1I GRCGYC 2 cut(s) 134, 309
Hin1II CATG 5 cut(s) 212, 353, 547, 607, 817
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HincII GTYRAC 2 cut(s) 163, 523
HindII GTYRAC 2 cut(s) 163, 523
HindIII AAGCTT 1 cut(s) 752
HinfI GANTC 1 cut(s) 489
HpaII CCGG 5 cut(s) 114, 131, 171, 704, 857
Hpy166II GTNNAC 2 cut(s) 163, 523
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 302, 857
Hpy8I GTNNAC 2 cut(s) 163, 523
Hpy99I CGWCG 6 cut(s) 35, 104, 164, 167, 311, 314
HpyAV CCTTC 2 cut(s) 671, 680
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 2 cut(s) 309, 768
HpyCH4V TGCA 5 cut(s) 148, 380, 502, 784, 810
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 180, 189
HpyF3I CTNAG 2 cut(s) 578, 750
HpySE526I ACGT 2 cut(s) 309, 768
Hsp92I GRCGYC 2 cut(s) 134, 309
Hsp92II CATG 5 cut(s) 212, 353, 547, 607, 817
HspAI GCGC 1 cut(s) 466
Kpn2I TCCGGA 1 cut(s) 856
Kzo9I GATC 1 cut(s) 439
LmnI GCTCC 4 cut(s) 19, 241, 285, 588
Lsp1109I GCAGC 6 cut(s) 132, 160, 364, 392, 526, 693
LweI GCATC 4 cut(s) 70, 132, 397, 819
MaeI CTAG 5 cut(s) 179, 420, 509, 516, 867
MaeII ACGT 2 cut(s) 309, 768
MaeIII GTNAC 1 cut(s) 643
MalI GATC 1 cut(s) 441
MbiI CCGCTC 2 cut(s) 288, 460
MboI GATC 1 cut(s) 439
MboII GAAGA 4 cut(s) 435, 654, 686, 773
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 1 cut(s) 24
MlsI TGGCCA 2 cut(s) 5, 354
MluCI AATT 2 cut(s) 48, 85
MluNI TGGCCA 2 cut(s) 5, 354
Mox20I TGGCCA 2 cut(s) 5, 354
MroI TCCGGA 1 cut(s) 856
MroXI GAANNNNTTC 1 cut(s) 510
MscI TGGCCA 2 cut(s) 5, 354
Msp20I TGGCCA 2 cut(s) 5, 354
MspA1I CMGCKG 1 cut(s) 151
MspI CCGG 5 cut(s) 114, 131, 171, 704, 857
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 3 cut(s) 89, 180, 189
NcoI CCATGG 2 cut(s) 208, 349
NdeII GATC 1 cut(s) 439
NlaIII CATG 5 cut(s) 212, 353, 547, 607, 817
NlaIV GGNNCC 5 cut(s) 21, 169, 206, 584, 636
NmeAIII GCCGAG 3 cut(s) 33, 481, 812
NsbI TGCGCA 1 cut(s) 467
PaeR7I CTCGAG 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 1 cut(s) 489
PflFI GACNNNGTC 1 cut(s) 308
PkrI GCNGC 7 cut(s) 147, 150, 379, 382, 541, 683, 778
Psp1406I AACGTT 1 cut(s) 768
Psp6I CCWGG 1 cut(s) 24
PspFI CCCAGC 1 cut(s) 254
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 5 cut(s) 21, 169, 206, 584, 636
PspPI GGNCC 1 cut(s) 168
PspXI VCTCGAGB 1 cut(s) 41
PstI CTGCAG 2 cut(s) 150, 382
PstNI CAGNNNCTG 1 cut(s) 377
PsuI RGATCY 1 cut(s) 439
PsyI GACNNNGTC 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 151
SalI GTCGAC 1 cut(s) 161
SatI GCNGC 7 cut(s) 146, 149, 378, 381, 540, 682, 777
Sau3AI GATC 1 cut(s) 439
Sau96I GGNCC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 1 cut(s) 24
SfaNI GCATC 4 cut(s) 70, 132, 397, 819
SfcI CTRYAG 2 cut(s) 146, 378
Sfr274I CTCGAG 1 cut(s) 41
SgrDI CGTCGACG 1 cut(s) 161
SinI GGWCC 1 cut(s) 168
SlaI CTCGAG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SpeI ACTAGT 1 cut(s) 508
Sse9I AATT 2 cut(s) 48, 85
SspMI CTAG 5 cut(s) 179, 420, 509, 516, 867
StyD4I CCNGG 1 cut(s) 24
StyI CCWWGG 5 cut(s) 178, 208, 225, 349, 407
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 2 cut(s) 312, 771
TaqI TCGA 4 cut(s) 42, 162, 301, 322
TasI AATT 2 cut(s) 48, 85
TauI GCSGC 1 cut(s) 779
TfiI GAWTC 1 cut(s) 489
TscAI CASTG 1 cut(s) 831
TseI GCWGC 6 cut(s) 145, 148, 377, 380, 539, 681
TspDTI ATGAA 2 cut(s) 318, 902
TspGWI ACGGA 2 cut(s) 148, 545
TspRI CASTG 1 cut(s) 831
Tth111I GACNNNGTC 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 168
XapI RAATTY 1 cut(s) 48
XhoI CTCGAG 1 cut(s) 41
XmaJI CCTAGG 1 cut(s) 178
XmiI GTMKAC 1 cut(s) 162
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 5 cut(s) 179, 420, 509, 516, 867
ZraI GACGTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.