Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002134

Physical Location & Seq

Genomic Coordinates Forward (+)

31318697 .. 31324682

Gene Structure 5986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1241500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCGGGAAATCCGCCAGAAGGACTTGGAGACGATTTCTTTGAGCAGATCCTAGCTGTGCCGCCGTCGTATAGTGCTGCTGGTGGTGGTGGTGGTGAGTCAGCTGGTGGTGGGTACGGAGGAGAAGTGGGGTCCATGCCCATGGCGCTGCAGCTGGGTTCTGCTGGGTCCTCGGGTGGTGGTGCTGGGTACAGAGGAGGAGGAGTTGGGATGGGGCTGGGTATGCCGTTGGGTTTGAACTTGGAGCAGGGTGGGTTTCTTGGGCAAGACAACAGGTTCAGAGATGAAGTTGTTGAAGCCAATAATACTAACAACACAAACACTTCCAATGTCTCTGCTTCAATTAACGAAAGAGATTCGGTTCATATGTCAAGTTTGTTTCCAGCATTTGGACATTTGCAAAATCACTCTTCACTCCGGCCAACGCCACGCCCTCCGCAACCTCCTCACCAGTTTCATAGCCAACCACCACCAGGGCTGTCTAATGCTGTCCATCACCCTCCTGCCATCCGCCCAAGGGTTCGAGCAAGGCGAGGCCAAGCAACAGATCCCCACAGTATTGCTGAACGGTTACGTCGGGAAAGAATTGCAGAAAGAATGAAGGCTTTGCAGGAATTGGTACCCAGTTGTAACAAGACAGATAGGGCAGCTATGCTTGACGAAATTGTGGATTATGTAAAATTTCTAAGGCTCCAAGTCAAGGTTTTGAGCATGAGTCGACTCGGGGGAGCAGGCGCAGTGGCTCAGCTTGTCGCTGACGTACCCCTATCAGCAGTTGAGGGGGAGGGCATGGAAGGAGGAACCAATCAACAAGCATGGGAGAAGTGGTCGAATGATGGCACAGAACAGCAAGTAGCTAAGCTGATGGAAGAAGATGTAGGAGCTGCCATGCAGTTCCTCCAGTCCAAGGCACTCTGCATCATGCCCATATCCCTCGCCCCAGCAATCTTCCGGACACATCAACCTGACGCAACGACAATGGTGAAGCCGGAATCAAACTCCTCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

337

Amino Acids

35.47

Weight (kDa)

5.87

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	185 - 230	1.1e-08	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	189 - 233	4.7e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02590 AT4G02590 AT4G02590
fragaria_vesca	FvH4_2g22560 FvH4_2g22560 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900
malus_domestica	MD04G1224700.v1.1 MD05G1206200.v1.1 MD10G1193200.v1.1 MD12G1241500.v1.1
prunus_persica	Prupe.6G343400_v2.0.a1 Prupe.6G343400_v2.0.a1 Prupe.8G232600_v2.0.a1
pyrus_communis	pycom04g19790 pycom10g16690 pycom12g22100
rosa_chinensis	RchiOBHm_Chr3g0451111 RchiOBHm_Chr6g0289601
rosa_laevigata	RLG00000012289 RLG00000025689
rosa_multiflora	Rmu_sc0005376.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428580 Rroxscaffold_7G00177820
rosa_rugosa	Rorug02G0631400 Rorug02G0631500 Rorug02G0631600 Rorug02G0631700 Rorug02G0631800 Rorug06G0205100
rosa_samantha	Rh3AG034400 Rh3BG034700 Rh3CG033400 Rh3DG034400 Rh6AG316600 Rh6BG323000 Rh6CG329600 Rh6DG315000
rosa_wichuraiana	Rw3G002500 Rw6G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	619
AccB1I	GGYRCC	1 cut(s)	619
AccB7I	CCANNNNNTGG	1 cut(s)	389
AccI	GTMKAC	1 cut(s)	718
AccIII	TCCGGA	1 cut(s)	951
AciI	CCGC	5 cut(s)	5, 14, 62, 437, 511
AclWI	GGATC	2 cut(s)	43, 542
AcoI	YGGCCR	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	680
AfaI	GTAC	4 cut(s)	116, 191, 621, 762
AfiI	CCNNNNNNNGG	6 cut(s)	20, 389, 473, 517, 700, 907
AgsI	TTSAA	3 cut(s)	238, 296, 342
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	8 cut(s)	56, 104, 154, 650, 748, 857, 862, 884
AluI	AGCT	8 cut(s)	56, 104, 154, 650, 748, 857, 862, 884
Alw26I	GTCTC	2 cut(s)	24, 337
AlwI	GGATC	2 cut(s)	43, 542
Ama87I	CYCGRG	2 cut(s)	172, 722
Aor13HI	TCCGGA	1 cut(s)	951
AoxI	GGCC	2 cut(s)	419, 535
ApeKI	GCWGC	5 cut(s)	77, 148, 151, 647, 884
ApoI	RAATTY	1 cut(s)	680
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
Asp718I	GGTACC	1 cut(s)	619
AspLEI	GCGC	2 cut(s)	148, 737
AspS9I	GGNCC	2 cut(s)	132, 168
AsuHPI	GGTGA	4 cut(s)	107, 440, 488, 994
AvaI	CYCGRG	2 cut(s)	172, 722
AvaII	GGWCC	2 cut(s)	132, 168
BanI	GGYRCC	1 cut(s)	619
BbvI	GCAGC	5 cut(s)	64, 135, 163, 659, 871
BccI	CCATC	5 cut(s)	205, 501, 515, 830, 859
BceAI	ACGGC	2 cut(s)	49, 211
BciT130I	CCWGG	1 cut(s)	474
BcoDI	GTCTC	2 cut(s)	24, 337
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	149
BfoI	RGCGCY	1 cut(s)	149
BisI	GCNGC	6 cut(s)	62, 78, 149, 152, 648, 885
BlpI	GCTNAGC	2 cut(s)	744, 858
BlsI	GCNGC	6 cut(s)	63, 79, 150, 153, 649, 886
Bme1390I	CCNGG	1 cut(s)	474
Bme18I	GGWCC	2 cut(s)	132, 168
BmeT110I	CYCGRG	2 cut(s)	172, 722
BmgT120I	GGNCC	2 cut(s)	132, 168
BmiI	GGNNCC	5 cut(s)	133, 169, 621, 692, 802
BmrFI	CCNGG	1 cut(s)	474
BmrI	ACTGGG	1 cut(s)	618
BmsI	GCATC	1 cut(s)	927
BmuI	ACTGGG	1 cut(s)	618
BpmI	CTGGAG	1 cut(s)	884
Bpu1102I	GCTNAGC	2 cut(s)	744, 858
BsaJI	CCNNGG	5 cut(s)	141, 171, 473, 515, 906
BsaWI	WCCGGW	1 cut(s)	951
BsaXI	ACNNNNNCTCC	6 cut(s)	111, 141, 189, 219, 812, 842
Bsc4I	CCNNNNNNNGG	6 cut(s)	20, 389, 473, 517, 700, 907
Bse1I	ACTGG	3 cut(s)	451, 624, 901
BseAI	TCCGGA	1 cut(s)	951
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	5 cut(s)	141, 171, 473, 515, 906
BseGI	GGATG	2 cut(s)	216, 507
BseLI	CCNNNNNNNGG	6 cut(s)	20, 389, 473, 517, 700, 907
BseMII	CTCAG	1 cut(s)	758
BseNI	ACTGG	3 cut(s)	451, 624, 901
BseRI	GAGGAG	7 cut(s)	135, 210, 213, 216, 435, 991, 994
BseXI	GCAGC	5 cut(s)	64, 135, 163, 659, 871
BseYI	CCCAGC	5 cut(s)	154, 164, 185, 217, 940
BshFI	GGCC	2 cut(s)	421, 537
BshNI	GGYRCC	1 cut(s)	619
BsiHKCI	CYCGRG	2 cut(s)	172, 722
BsiSI	CCGG	3 cut(s)	418, 952, 989
BslI	CCNNNNNNNGG	6 cut(s)	20, 389, 473, 517, 700, 907
BsmAI	GTCTC	2 cut(s)	24, 337
BsmBI	CGTCTC	1 cut(s)	24
BsnI	GGCC	2 cut(s)	421, 537
BsoBI	CYCGRG	2 cut(s)	172, 722
Bsp13I	TCCGGA	1 cut(s)	951
Bsp143I	GATC	2 cut(s)	48, 547
Bsp1720I	GCTNAGC	2 cut(s)	744, 858
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	5 cut(s)	5, 14, 62, 437, 511
BspANI	GGCC	2 cut(s)	421, 537
BspCNI	CTCAG	1 cut(s)	757
BspEI	TCCGGA	1 cut(s)	951
BspLI	GGNNCC	5 cut(s)	133, 169, 621, 692, 802
BspMAI	CTGCAG	1 cut(s)	153
BspPI	GGATC	2 cut(s)	43, 542
BspT107I	GGYRCC	1 cut(s)	619
BsrI	ACTGG	3 cut(s)	451, 624, 901
BssECI	CCNNGG	5 cut(s)	141, 171, 473, 515, 906
BssMI	GATC	2 cut(s)	48, 547
BssT1I	CCWWGG	3 cut(s)	141, 515, 906
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	557, 570
Bst6I	CTCTTC	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	733
BstDEI	CTNAG	3 cut(s)	686, 744, 858
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	216, 507
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	2 cut(s)	148, 737
BstKTI	GATC	2 cut(s)	51, 550
BstMAI	GTCTC	2 cut(s)	24, 337
BstMBI	GATC	2 cut(s)	48, 547
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 223
BstNI	CCWGG	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	472
BstSFI	CTRYAG	1 cut(s)	149
BstV1I	GCAGC	5 cut(s)	64, 135, 163, 659, 871
BstX2I	RGATCY	2 cut(s)	48, 547
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstYI	RGATCY	2 cut(s)	48, 547
BsuRI	GGCC	2 cut(s)	421, 537
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	216, 507
BtsI	GCAGTG	1 cut(s)	744
BtsIMutI	CAGTG	1 cut(s)	744
Cac8I	GCNNGC	1 cut(s)	733
CfoI	GCGC	2 cut(s)	148, 737
Cfr13I	GGNCC	2 cut(s)	132, 168
CseI	GACGC	1 cut(s)	977
Csp6I	GTAC	4 cut(s)	115, 190, 620, 761
CviAII	CATG	7 cut(s)	136, 142, 712, 790, 816, 889, 922
CviQI	GTAC	4 cut(s)	115, 190, 620, 761
DdeI	CTNAG	3 cut(s)	686, 744, 858
DpnI	GATC	2 cut(s)	50, 549
DpnII	GATC	2 cut(s)	48, 547
EaeI	YGGCCR	1 cut(s)	419
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
EciI	GGCGGA	1 cut(s)	500
Eco130I	CCWWGG	3 cut(s)	141, 515, 906
Eco47I	GGWCC	2 cut(s)	132, 168
Eco88I	CYCGRG	2 cut(s)	172, 722
EcoO109I	RGGNCCY	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	3 cut(s)	141, 515, 906
ErhI	CCWWGG	3 cut(s)	141, 515, 906
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	7 cut(s)	139, 145, 715, 793, 819, 892, 925
FatI	CATG	7 cut(s)	135, 141, 711, 789, 815, 888, 921
FauNDI	CATATG	1 cut(s)	366
FblI	GTMKAC	1 cut(s)	718
Fnu4HI	GCNGC	6 cut(s)	62, 78, 149, 152, 648, 885
FokI	GGATG	2 cut(s)	223, 494
Fsp4HI	GCNGC	6 cut(s)	62, 78, 149, 152, 648, 885
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	2 cut(s)	147, 736
GluI	GCNGC	6 cut(s)	62, 78, 149, 152, 648, 885
GsaI	CCCAGC	5 cut(s)	158, 168, 189, 221, 944
GsuI	CTGGAG	1 cut(s)	884
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	421, 537
HapII	CCGG	3 cut(s)	418, 952, 989
HgaI	GACGC	1 cut(s)	977
HhaI	GCGC	2 cut(s)	148, 737
Hin1II	CATG	7 cut(s)	139, 145, 715, 793, 819, 892, 925
Hin6I	GCGC	2 cut(s)	146, 735
HinP1I	GCGC	2 cut(s)	146, 735
HincII	GTYRAC	1 cut(s)	719
HindII	GTYRAC	1 cut(s)	719
HinfI	GANTC	5 cut(s)	98, 356, 715, 720, 992
HpaII	CCGG	3 cut(s)	418, 952, 989
HphI	GGTGA	4 cut(s)	107, 440, 488, 994
Hpy166II	GTNNAC	1 cut(s)	719
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	2 cut(s)	578, 952
Hpy8I	GTNNAC	1 cut(s)	719
Hpy99I	CGWCG	2 cut(s)	70, 579
HpyAV	CCTTC	3 cut(s)	14, 595, 788
HpyCH4III	ACNGT	2 cut(s)	557, 570
HpyCH4IV	ACGT	2 cut(s)	574, 759
HpyCH4V	TGCA	6 cut(s)	151, 400, 590, 610, 892, 918
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 223
HpyF3I	CTNAG	3 cut(s)	686, 744, 858
HpySE526I	ACGT	2 cut(s)	574, 759
Hsp92II	CATG	7 cut(s)	139, 145, 715, 793, 819, 892, 925
HspAI	GCGC	2 cut(s)	146, 735
Kpn2I	TCCGGA	1 cut(s)	951
KpnI	GGTACC	1 cut(s)	623
Kzo9I	GATC	2 cut(s)	48, 547
LmnI	GCTCC	4 cut(s)	244, 696, 728, 881
Lsp1109I	GCAGC	5 cut(s)	64, 135, 163, 659, 871
LweI	GCATC	1 cut(s)	927
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	2 cut(s)	574, 759
MaeIII	GTNAC	2 cut(s)	570, 629
MalI	GATC	2 cut(s)	50, 549
MboI	GATC	2 cut(s)	48, 547
MboII	GAAGA	4 cut(s)	402, 881, 884, 940
MflI	RGATCY	2 cut(s)	48, 547
MluCI	AATT	5 cut(s)	342, 585, 614, 663, 680
MlyI	GAGTC	3 cut(s)	107, 714, 724
MroI	TCCGGA	1 cut(s)	951
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	140
MspA1I	CMGCKG	2 cut(s)	104, 154
MspI	CCGG	3 cut(s)	418, 952, 989
MspR9I	CCNGG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	2 cut(s)	145, 223
NcoI	CCATGG	1 cut(s)	141
NdeI	CATATG	1 cut(s)	366
NdeII	GATC	2 cut(s)	48, 547
NlaIII	CATG	7 cut(s)	139, 145, 715, 793, 819, 892, 925
NlaIV	GGNNCC	5 cut(s)	133, 169, 621, 692, 802
PcsI	WCGNNNNNNNCGW	1 cut(s)	529
PfeI	GAWTC	2 cut(s)	356, 992
PflMI	CCANNNNNTGG	1 cut(s)	389
PkrI	GCNGC	6 cut(s)	63, 79, 150, 153, 649, 886
PleI	GAGTC	3 cut(s)	106, 714, 723
PpsI	GAGTC	3 cut(s)	106, 714, 723
PpuMI	RGGWCCY	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	472
PspFI	CCCAGC	5 cut(s)	154, 164, 185, 217, 940
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	5 cut(s)	133, 169, 621, 692, 802
PspPI	GGNCC	2 cut(s)	132, 168
PspPPI	RGGWCCY	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	48, 547
PvuII	CAGCTG	2 cut(s)	104, 154
RsaI	GTAC	4 cut(s)	116, 191, 621, 762
RsaNI	GTAC	4 cut(s)	115, 190, 620, 761
RseI	CAYNNNNRTG	1 cut(s)	140
SalI	GTCGAC	1 cut(s)	717
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	6 cut(s)	62, 78, 149, 152, 648, 885
Sau3AI	GATC	2 cut(s)	48, 547
Sau96I	GGNCC	2 cut(s)	132, 168
SchI	GAGTC	3 cut(s)	107, 714, 724
ScrFI	CCNGG	1 cut(s)	474
SfaNI	GCATC	1 cut(s)	927
SfcI	CTRYAG	1 cut(s)	149
SinI	GGWCC	2 cut(s)	132, 168
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	5 cut(s)	342, 585, 614, 663, 680
SsiI	CCGC	5 cut(s)	5, 14, 62, 437, 511
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	472
StyI	CCWWGG	3 cut(s)	141, 515, 906
TaaI	ACNGT	2 cut(s)	557, 570
TaiI	ACGT	2 cut(s)	577, 762
TaqI	TCGA	3 cut(s)	523, 718, 830
TasI	AATT	5 cut(s)	342, 585, 614, 663, 680
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	2 cut(s)	356, 992
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	744
TseI	GCWGC	5 cut(s)	77, 148, 151, 647, 884
TspDTI	ATGAA	4 cut(s)	300, 353, 446, 614
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	744
Van91I	CCANNNNNTGG	1 cut(s)	389
VpaK11BI	GGWCC	2 cut(s)	132, 168
XapI	RAATTY	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	718
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.