RLG00000025689

Transcription factor UNE12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002134
Physical Location & Seq
Forward (+)
47639107 .. 47643341
4235 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025689

Sequence Viewer

Length: 717 bp
ATGGCGGGCAATCCGCCTGAGGGACTCGGAGACGATTTCTTCGAGCAGATCATGGCCGTTCCTCAAACGTACAGTGGCTCCGGCTCTGCTGCTGACTCAGCTGGTGGTGGCTATGGAGACGTGGGGACCATGCCTATGGTGCTGCAGCTGGGCTCCGGAACCGGGTCTTCTTCTGGCTCCGGCGTCGGGTACAGAGGAGGAGTCGGGTCGGTTGGGATGGGTATGGGCATGCCTTTGGGTCTGAATTTGGAGCAGGGGTTTCTTGGACAAGACAGGTTCAGAGATGAAGTTGAACCCAACTGTAACACCAACAACAACAACGGTAACAGTTCTAATGATAGAGATTCGGTTCACATGACGACTTTGTTTCCGGCATTTGGACATTTGCAAAACCACTCTGTCCGGCCAACGCCGCCGCCGCCGCCGCCTCCTCAGCCTCACCAGCAGTTTCATAGCCAACCAGCACCGGGGCCAGCTCCTGCTGCCCATCACCCTCCTGCTATCCGCCCAAGGGTCCGAGCAAGACGAGGTCAAGCAACAGATCCCCACAGTATTGCCGAGCGGTTACGCCGGGAAAGAATTGCAGAAAGAATGAAGGCTTTGCAGGAATTGGTACCTAGTTGTAACAAGACAGATAGGGCAGCTATGCTTGATGAAATCGTCGATTATGTGAAATTTCTAAGGCTCCAAGTAAAGGTATGCTTATTCAAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

239

Amino Acids

25.45

Weight (kDa)

7.1

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 183 - 228 6.4e-09 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 187 - 233 2.8e-06 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 613
AccB1I GGYRCC 1 cut(s) 613
AccBSI CCGCTC 1 cut(s) 562
AccIII TCCGGA 1 cut(s) 155
AciI CCGC 9 cut(s) 5, 14, 413, 416, 419, 422, 425, 505, 562
AclWI GGATC 1 cut(s) 536
AcoI YGGCCR 2 cut(s) 54, 404
AcsI RAATTY 3 cut(s) 244, 674, 711
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 3 cut(s) 71, 191, 615
AfiI CCNNNNNNNGG 7 cut(s) 20, 162, 186, 377, 467, 511, 694
AgsI TTSAA 2 cut(s) 293, 709
AjiI CACGTC 1 cut(s) 121
AluBI AGCT 4 cut(s) 101, 148, 476, 644
AluI AGCT 4 cut(s) 101, 148, 476, 644
Alw26I GTCTC 2 cut(s) 24, 111
AlwI GGATC 1 cut(s) 536
AlwNI CAGNNNCTG 1 cut(s) 479
Aor13HI TCCGGA 1 cut(s) 155
AoxI GGCC 3 cut(s) 54, 404, 470
ApeKI GCWGC 5 cut(s) 89, 142, 145, 482, 641
ApoI RAATTY 3 cut(s) 244, 674, 711
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
Asp718I GGTACC 1 cut(s) 613
AspS9I GGNCC 3 cut(s) 126, 470, 514
AsuC2I CCSGG 3 cut(s) 163, 468, 572
AsuHPI GGTGA 2 cut(s) 431, 482
AvaII GGWCC 2 cut(s) 126, 514
AxyI CCTNAGG 1 cut(s) 18
BanI GGYRCC 1 cut(s) 613
BanII GRGCYC 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 159
BbvCI CCTCAGC 1 cut(s) 432
BbvI GCAGC 5 cut(s) 76, 129, 157, 469, 653
BccI CCATC 2 cut(s) 211, 495
BceAI ACGGC 1 cut(s) 41
BcnI CCSGG 3 cut(s) 163, 468, 572
BcoDI GTCTC 2 cut(s) 24, 111
BfaI CTAG 1 cut(s) 618
BfmI CTRYAG 1 cut(s) 143
Bme1390I CCNGG 3 cut(s) 163, 468, 572
Bme18I GGWCC 2 cut(s) 126, 514
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 3 cut(s) 126, 470, 514
BmiI GGNNCC 9 cut(s) 79, 127, 154, 160, 178, 471, 515, 615, 686
BmrFI CCNGG 3 cut(s) 163, 468, 572
BpiI GAAGAC 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 432
BpuMI CCSGG 3 cut(s) 163, 468, 572
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 467, 509
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 242, 272
Bsc4I CCNNNNNNNGG 7 cut(s) 20, 162, 186, 377, 467, 511, 694
Bse21I CCTNAGG 1 cut(s) 18
BseAI TCCGGA 1 cut(s) 155
BseDI CCNNGG 2 cut(s) 467, 509
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 7 cut(s) 20, 162, 186, 377, 467, 511, 694
BseMII CTCAG 3 cut(s) 9, 111, 446
BseRI GAGGAG 3 cut(s) 210, 213, 420
BseXI GCAGC 5 cut(s) 76, 129, 157, 469, 653
BseYI CCCAGC 1 cut(s) 148
BshFI GGCC 3 cut(s) 56, 406, 472
BshNI GGYRCC 1 cut(s) 613
BsiSI CCGG 8 cut(s) 81, 156, 162, 180, 371, 403, 467, 571
BslFI GGGAC 2 cut(s) 36, 139
BslI CCNNNNNNNGG 7 cut(s) 20, 162, 186, 377, 467, 511, 694
BsmAI GTCTC 2 cut(s) 24, 111
BsmBI CGTCTC 2 cut(s) 24, 111
BsmFI GGGAC 2 cut(s) 36, 139
BsnI GGCC 3 cut(s) 56, 406, 472
Bsp1286I GDGCHC 1 cut(s) 155
Bsp13I TCCGGA 1 cut(s) 155
Bsp143I GATC 2 cut(s) 48, 541
BspACI CCGC 9 cut(s) 5, 14, 413, 416, 419, 422, 425, 505, 562
BspANI GGCC 3 cut(s) 56, 406, 472
BspCNI CTCAG 3 cut(s) 10, 110, 445
BspEI TCCGGA 1 cut(s) 155
BspLI GGNNCC 9 cut(s) 79, 127, 154, 160, 178, 471, 515, 615, 686
BspMAI CTGCAG 1 cut(s) 147
BspPI GGATC 1 cut(s) 536
BspT107I GGYRCC 1 cut(s) 613
BsrBI CCGCTC 1 cut(s) 562
BssECI CCNNGG 2 cut(s) 467, 509
BssMI GATC 2 cut(s) 48, 541
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 509
Bst4CI ACNGT 5 cut(s) 74, 302, 323, 329, 551
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 3 cut(s) 7, 230, 474
BstDEI CTNAG 4 cut(s) 18, 97, 432, 680
BstF5I GGATG 1 cut(s) 222
BstKTI GATC 2 cut(s) 51, 544
BstMAI GTCTC 2 cut(s) 24, 111
BstMBI GATC 2 cut(s) 48, 541
BstMWI GCNNNNNNNGC 9 cut(s) 98, 139, 412, 418, 421, 424, 433, 442, 482
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 3 cut(s) 161, 466, 570
BstSFI CTRYAG 1 cut(s) 143
BstV1I GCAGC 5 cut(s) 76, 129, 157, 469, 653
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 541
BstXI CCANNNNNNTGG 1 cut(s) 136
BstYI RGATCY 1 cut(s) 541
Bsu36I CCTNAGG 1 cut(s) 18
BsuRI GGCC 3 cut(s) 56, 406, 472
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 79
Cac8I GCNNGC 3 cut(s) 7, 230, 474
CaiI CAGNNNCTG 1 cut(s) 479
Cfr13I GGNCC 3 cut(s) 126, 470, 514
CseI GACGC 1 cut(s) 172
Csp6I GTAC 3 cut(s) 70, 190, 614
CviAII CATG 4 cut(s) 52, 130, 229, 355
CviQI GTAC 3 cut(s) 70, 190, 614
DdeI CTNAG 4 cut(s) 18, 97, 432, 680
DpnI GATC 2 cut(s) 50, 543
DpnII GATC 2 cut(s) 48, 541
EaeI YGGCCR 2 cut(s) 54, 404
EciI GGCGGA 1 cut(s) 494
Eco130I CCWWGG 1 cut(s) 509
Eco24I GRGCYC 1 cut(s) 155
Eco47I GGWCC 2 cut(s) 126, 514
Eco81I CCTNAGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 509
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 509
Esp3I CGTCTC 2 cut(s) 24, 111
FaeI CATG 4 cut(s) 55, 133, 232, 358
FalI AAGNNNNNCTT 1 cut(s) 686
FaqI GGGAC 2 cut(s) 36, 139
FatI CATG 4 cut(s) 51, 129, 228, 354
FokI GGATG 1 cut(s) 229
FriOI GRGCYC 1 cut(s) 155
FspBI CTAG 1 cut(s) 618
GsaI CCCAGC 1 cut(s) 152
HaeIII GGCC 3 cut(s) 56, 406, 472
HapII CCGG 8 cut(s) 81, 156, 162, 180, 371, 403, 467, 571
HgaI GACGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 4 cut(s) 55, 133, 232, 358
HinfI GANTC 4 cut(s) 24, 95, 201, 344
HpaII CCGG 8 cut(s) 81, 156, 162, 180, 371, 403, 467, 571
HphI GGTGA 2 cut(s) 431, 482
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 4 cut(s) 29, 243, 281, 518
Hpy188III TCNNGA 1 cut(s) 156
Hpy8I GTNNAC 1 cut(s) 352
Hpy99I CGWCG 2 cut(s) 188, 665
HpyAV CCTTC 1 cut(s) 589
HpyCH4III ACNGT 5 cut(s) 74, 302, 323, 329, 551
HpyCH4IV ACGT 2 cut(s) 68, 120
HpyCH4V TGCA 4 cut(s) 145, 388, 584, 604
HpyF10VI GCNNNNNNNGC 9 cut(s) 98, 139, 412, 418, 421, 424, 433, 442, 482
HpyF3I CTNAG 4 cut(s) 18, 97, 432, 680
HpySE526I ACGT 2 cut(s) 68, 120
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 4 cut(s) 55, 133, 232, 358
Kpn2I TCCGGA 1 cut(s) 155
KpnI GGTACC 1 cut(s) 617
Kzo9I GATC 2 cut(s) 48, 541
LmnI GCTCC 6 cut(s) 83, 158, 182, 250, 481, 690
Lsp1109I GCAGC 5 cut(s) 76, 129, 157, 469, 653
MaeI CTAG 1 cut(s) 618
MaeII ACGT 2 cut(s) 68, 120
MaeIII GTNAC 4 cut(s) 302, 323, 564, 623
MalI GATC 2 cut(s) 50, 543
MbiI CCGCTC 1 cut(s) 562
MboI GATC 2 cut(s) 48, 541
MboII GAAGA 3 cut(s) 31, 159, 162
MflI RGATCY 1 cut(s) 541
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 5 cut(s) 244, 579, 608, 674, 711
MlyI GAGTC 3 cut(s) 18, 89, 210
MnlI CCTC 9 cut(s) 13, 72, 188, 191, 438, 441, 447, 504, 521
MroI TCCGGA 1 cut(s) 155
MseI TTAA 1 cut(s) 715
MslI CAYNNNNRTG 1 cut(s) 134
MspA1I CMGCKG 2 cut(s) 101, 148
MspI CCGG 8 cut(s) 81, 156, 162, 180, 371, 403, 467, 571
MspR9I CCNGG 3 cut(s) 163, 468, 572
MwoI GCNNNNNNNGC 9 cut(s) 98, 139, 412, 418, 421, 424, 433, 442, 482
NciI CCSGG 3 cut(s) 163, 468, 572
NdeII GATC 2 cut(s) 48, 541
NlaIII CATG 4 cut(s) 55, 133, 232, 358
NlaIV GGNNCC 9 cut(s) 79, 127, 154, 160, 178, 471, 515, 615, 686
NmeAIII GCCGAG 1 cut(s) 583
NspI RCATGY 1 cut(s) 232
PaeI GCATGC 1 cut(s) 232
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 1 cut(s) 344
PflFI GACNNNGTC 1 cut(s) 528
PleI GAGTC 3 cut(s) 18, 89, 209
PpsI GAGTC 3 cut(s) 18, 89, 209
PspFI CCCAGC 1 cut(s) 148
PspN4I GGNNCC 9 cut(s) 79, 127, 154, 160, 178, 471, 515, 615, 686
PspPI GGNCC 3 cut(s) 126, 470, 514
PstI CTGCAG 1 cut(s) 147
PstNI CAGNNNCTG 1 cut(s) 479
PsuI RGATCY 1 cut(s) 541
PsyI GACNNNGTC 1 cut(s) 528
PvuII CAGCTG 2 cut(s) 101, 148
RsaI GTAC 3 cut(s) 71, 191, 615
RsaNI GTAC 3 cut(s) 70, 190, 614
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 1 cut(s) 715
Sau3AI GATC 2 cut(s) 48, 541
Sau96I GGNCC 3 cut(s) 126, 470, 514
SchI GAGTC 3 cut(s) 18, 89, 210
ScrFI CCNGG 3 cut(s) 163, 468, 572
SduI GDGCHC 1 cut(s) 155
SfcI CTRYAG 1 cut(s) 143
SinI GGWCC 2 cut(s) 126, 514
SmiMI CAYNNNNRTG 1 cut(s) 134
SphI GCATGC 1 cut(s) 232
Sse9I AATT 5 cut(s) 244, 579, 608, 674, 711
SsiI CCGC 9 cut(s) 5, 14, 413, 416, 419, 422, 425, 505, 562
SspMI CTAG 1 cut(s) 618
StyD4I CCNGG 3 cut(s) 161, 466, 570
StyI CCWWGG 1 cut(s) 509
TaaI ACNGT 5 cut(s) 74, 302, 323, 329, 551
TaiI ACGT 2 cut(s) 71, 123
TaqI TCGA 2 cut(s) 42, 663
TasI AATT 5 cut(s) 244, 579, 608, 674, 711
TauI GCSGC 5 cut(s) 415, 418, 421, 424, 427
TfiI GAWTC 1 cut(s) 344
Tru1I TTAA 1 cut(s) 715
Tru9I TTAA 1 cut(s) 715
TscAI CASTG 1 cut(s) 79
TseI GCWGC 5 cut(s) 89, 142, 145, 482, 641
TspDTI ATGAA 4 cut(s) 300, 440, 608, 669
TspRI CASTG 1 cut(s) 79
Tth111I GACNNNGTC 1 cut(s) 528
VpaK11BI GGWCC 2 cut(s) 126, 514
XapI RAATTY 3 cut(s) 244, 674, 711
XceI RCATGY 1 cut(s) 232
XspI CTAG 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.