Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005376.1

Orthogroup ID

OG0002134

Physical Location & Seq

Genomic Coordinates Reverse (-)

639 .. 3927

Gene Structure 3289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005376.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atggccaacaacccctccgaagctcaggccgacgatttcctcgagcaaattctcggcctccccaatttcgcctccgccgatgctaatttgaccggaggcgacggaggcctcgccggagctccctcctcgatgatgctccagctcagttccggtgacggctccggccacatgggcggaggtggctaccacggaggagtgttcccgttagggttgagcctggagcaggggaaggccgggtttctgaagcccgaggaggcctctgggagtgggaagcggtttcgagacgacgtcgttgatagtagagcttcggctgtgaaaaatgttttccatgggcaaccaatttccagtacagttgctgcagcaccgcatccaccggctatgcgaccaagggtgagggccagaagagggcaagccacggatccacatagcattgctgagcggttgcgccgagaacgaatagcagaaagaattagggcgttgcaggaactagttcccagtgtgaacaagacggatagagctgccatgcttgatgaaataatggattatgtgaagttcctgagactccaagtaaaggttttgagtatgagtagattgggaggagctggtgctgtcgcaccacttgtaacggacatcccactatcttcagttgaggaagaaggtggtgaaggtggtagaaaccaaccggcatgggataaatggtctaatgatggaacagaacgacaagtggctaagcttatggaagaaaatgttggagctgcaatgcagttccttcaatcaaaggctctttgcatcatgcctatctcgctagcctcggcaatttaccacactcaaccgccagacacctccagcgttgtcaagtctgaaatgaatcccccttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

293

Amino Acids

31.05

Weight (kDa)

5.91

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02590 AT4G02590 AT4G02590
fragaria_vesca	FvH4_2g22560 FvH4_2g22560 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900
malus_domestica	MD04G1224700.v1.1 MD05G1206200.v1.1 MD10G1193200.v1.1 MD12G1241500.v1.1
prunus_persica	Prupe.6G343400_v2.0.a1 Prupe.6G343400_v2.0.a1 Prupe.8G232600_v2.0.a1
pyrus_communis	pycom04g19790 pycom10g16690 pycom12g22100
rosa_chinensis	RchiOBHm_Chr3g0451111 RchiOBHm_Chr6g0289601
rosa_laevigata	RLG00000012289 RLG00000025689
rosa_multiflora	Rmu_sc0005376.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428580 Rroxscaffold_7G00177820
rosa_rugosa	Rorug02G0631400 Rorug02G0631500 Rorug02G0631600 Rorug02G0631700 Rorug02G0631800 Rorug06G0205100
rosa_samantha	Rh3AG034400 Rh3BG034700 Rh3CG033400 Rh3DG034400 Rh6AG316600 Rh6BG323000 Rh6CG329600 Rh6DG315000
rosa_wichuraiana	Rw3G002500 Rw6G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
AccBSI	CCGCTC	1 cut(s)	439
AciI	CCGC	6 cut(s)	75, 174, 274, 365, 439, 833
AclWI	GGATC	2 cut(s)	413, 426
AcoI	YGGCCR	2 cut(s)	3, 163
AcsI	RAATTY	1 cut(s)	48
AcuI	CTGAAG	2 cut(s)	263, 627
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	3 cut(s)	223, 405, 571
AgsI	TTSAA	1 cut(s)	773
AhlI	ACTAGT	1 cut(s)	487
AjnI	CCWGG	1 cut(s)	216
AjuI	GAANNNNNNNTTGG	2 cut(s)	732, 764
AluBI	AGCT	8 cut(s)	23, 119, 142, 305, 518, 602, 733, 755
AluI	AGCT	8 cut(s)	23, 119, 142, 305, 518, 602, 733, 755
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	2 cut(s)	276, 553
AlwI	GGATC	2 cut(s)	413, 426
AlwNI	CAGNNNCTG	1 cut(s)	356
Ama87I	CYCGRG	2 cut(s)	41, 248
AoxI	GGCC	8 cut(s)	3, 27, 55, 106, 163, 231, 255, 396
ApeKI	GCWGC	4 cut(s)	356, 359, 518, 755
ApoI	RAATTY	1 cut(s)	48
Asp700I	GAANNNNTTC	1 cut(s)	489
AspLEI	GCGC	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	396
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	3 cut(s)	164, 403, 674
AsuNHI	GCTAGC	1 cut(s)	805
AvaI	CYCGRG	2 cut(s)	41, 248
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	4 cut(s)	343, 371, 505, 742
BccI	CCATC	1 cut(s)	701
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	218
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	2 cut(s)	276, 553
BcuI	ACTAGT	1 cut(s)	487
BfaI	CTAG	2 cut(s)	488, 806
BfmI	CTRYAG	1 cut(s)	357
BglI	GCCNNNNNGGC	1 cut(s)	171
BisI	GCNGC	4 cut(s)	357, 360, 519, 756
BlpI	GCTNAGC	2 cut(s)	435, 729
BlsI	GCNGC	4 cut(s)	358, 361, 520, 757
Bme1390I	CCNGG	2 cut(s)	218, 235
BmeT110I	CYCGRG	2 cut(s)	41, 248
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	2 cut(s)	160, 420
BmrFI	CCNGG	2 cut(s)	218, 235
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	4 cut(s)	70, 123, 376, 798
BmtI	GCTAGC	1 cut(s)	809
BmuI	ACTGGG	1 cut(s)	489
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpmI	CTGGAG	3 cut(s)	122, 239, 829
Bpu10I	CCTNAGC	1 cut(s)	24
Bpu1102I	GCTNAGC	2 cut(s)	435, 729
BpuMI	CCSGG	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	6 cut(s)	187, 249, 328, 386, 414, 810
BsaWI	WCCGGW	2 cut(s)	92, 149
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 405, 571
Bse118I	RCCGGY	2 cut(s)	373, 682
Bse1I	ACTGG	2 cut(s)	345, 495
Bse3DI	GCAATG	2 cut(s)	429, 765
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	6 cut(s)	187, 249, 328, 386, 414, 810
BseGI	GGATG	2 cut(s)	367, 630
BseLI	CCNNNNNNNGG	3 cut(s)	223, 405, 571
BseMI	GCAATG	2 cut(s)	429, 765
BseMII	CTCAG	4 cut(s)	38, 157, 426, 548
BseNI	ACTGG	2 cut(s)	345, 495
BseRI	GAGGAG	4 cut(s)	115, 207, 266, 612
BseXI	GCAGC	4 cut(s)	343, 371, 505, 742
BshFI	GGCC	8 cut(s)	5, 29, 57, 108, 165, 233, 257, 398
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	2 cut(s)	41, 248
BsiSI	CCGG	7 cut(s)	93, 114, 150, 162, 234, 374, 683
BslI	CCNNNNNNNGG	3 cut(s)	223, 405, 571
BsmAI	GTCTC	2 cut(s)	276, 553
BsmBI	CGTCTC	1 cut(s)	276
BsnI	GGCC	8 cut(s)	5, 29, 57, 108, 165, 233, 257, 398
BsoBI	CYCGRG	2 cut(s)	41, 248
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	418
Bsp1720I	GCTNAGC	2 cut(s)	435, 729
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	6 cut(s)	75, 174, 274, 365, 439, 833
BspANI	GGCC	8 cut(s)	5, 29, 57, 108, 165, 233, 257, 398
BspCNI	CTCAG	4 cut(s)	37, 156, 427, 549
BspLI	GGNNCC	2 cut(s)	160, 420
BspMAI	CTGCAG	1 cut(s)	361
BspOI	GCTAGC	1 cut(s)	809
BspPI	GGATC	2 cut(s)	413, 426
BsrBI	CCGCTC	1 cut(s)	439
BsrDI	GCAATG	2 cut(s)	429, 765
BsrFI	RCCGGY	2 cut(s)	373, 682
BsrI	ACTGG	2 cut(s)	345, 495
BssAI	RCCGGY	2 cut(s)	373, 682
BssECI	CCNNGG	6 cut(s)	187, 249, 328, 386, 414, 810
BssMI	GATC	1 cut(s)	418
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	2 cut(s)	328, 386
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	1 cut(s)	397
BstACI	GRCGYC	1 cut(s)	288
BstC8I	GCNNGC	2 cut(s)	411, 807
BstDEI	CTNAG	5 cut(s)	24, 143, 435, 557, 729
BstDSI	CCRYGG	3 cut(s)	187, 328, 414
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	367, 630
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	1 cut(s)	421
BstMAI	GTCTC	2 cut(s)	276, 553
BstMBI	GATC	1 cut(s)	418
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 171, 180, 802
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	216, 233
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	4 cut(s)	343, 371, 505, 742
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	8 cut(s)	5, 29, 57, 108, 165, 233, 257, 398
BtgI	CCRYGG	3 cut(s)	187, 328, 414
BtsCI	GGATG	2 cut(s)	367, 630
BtsIMutI	CAGTG	1 cut(s)	502
Cac8I	GCNNGC	2 cut(s)	411, 807
CaiI	CAGNNNCTG	1 cut(s)	356
CfoI	GCGC	1 cut(s)	447
Cfr10I	RCCGGY	2 cut(s)	373, 682
Cfr13I	GGNCC	1 cut(s)	396
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	5 cut(s)	169, 329, 523, 687, 793
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	5 cut(s)	24, 143, 435, 557, 729
DpnI	GATC	1 cut(s)	420
DpnII	GATC	1 cut(s)	418
EaeI	YGGCCR	2 cut(s)	3, 163
Eam1104I	CTCTTC	1 cut(s)	397
EarI	CTCTTC	1 cut(s)	397
EciI	GGCGGA	2 cut(s)	64, 189
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	2 cut(s)	328, 386
Eco147I	AGGCCT	2 cut(s)	108, 257
Eco24I	GRGCYC	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	119
Eco57I	CTGAAG	2 cut(s)	263, 627
Eco88I	CYCGRG	2 cut(s)	41, 248
EcoICRI	GAGCTC	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	2 cut(s)	328, 386
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	2 cut(s)	328, 386
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	5 cut(s)	172, 332, 526, 690, 796
FatI	CATG	5 cut(s)	168, 328, 522, 686, 792
Fnu4HI	GCNGC	4 cut(s)	357, 360, 519, 756
FokI	GGATG	2 cut(s)	354, 617
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	4 cut(s)	357, 360, 519, 756
FspBI	CTAG	2 cut(s)	488, 806
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	4 cut(s)	357, 360, 519, 756
GsuI	CTGGAG	3 cut(s)	122, 239, 829
HaeIII	GGCC	8 cut(s)	5, 29, 57, 108, 165, 233, 257, 398
HapII	CCGG	7 cut(s)	93, 114, 150, 162, 234, 374, 683
HhaI	GCGC	1 cut(s)	447
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	5 cut(s)	172, 332, 526, 690, 796
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	2 cut(s)	561, 868
HpaII	CCGG	7 cut(s)	93, 114, 150, 162, 234, 374, 683
HphI	GGTGA	3 cut(s)	164, 403, 674
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	3 cut(s)	19, 243, 862
Hpy188III	TCNNGA	2 cut(s)	281, 556
Hpy8I	GTNNAC	1 cut(s)	502
Hpy99I	CGWCG	4 cut(s)	35, 104, 290, 293
HpyAV	CCTTC	4 cut(s)	223, 650, 659, 779
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	5 cut(s)	359, 481, 758, 763, 789
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 171, 180, 802
HpyF3I	CTNAG	5 cut(s)	24, 143, 435, 557, 729
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	5 cut(s)	172, 332, 526, 690, 796
HspAI	GCGC	1 cut(s)	445
Kzo9I	GATC	1 cut(s)	418
LmnI	GCTCC	7 cut(s)	116, 124, 141, 164, 220, 599, 752
Lsp1109I	GCAGC	4 cut(s)	343, 371, 505, 742
LweI	GCATC	4 cut(s)	70, 123, 376, 798
MaeI	CTAG	2 cut(s)	488, 806
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	152, 622
MalI	GATC	1 cut(s)	420
MbiI	CCGCTC	1 cut(s)	439
MboI	GATC	1 cut(s)	418
MboII	GAAGA	4 cut(s)	414, 633, 665, 752
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	48, 64, 85, 339, 468, 816
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	555
MmeI	TCCRAC	1 cut(s)	730
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	489
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	7 cut(s)	93, 114, 150, 162, 234, 374, 683
MspR9I	CCNGG	2 cut(s)	218, 235
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	4 cut(s)	105, 171, 180, 802
NciI	CCSGG	1 cut(s)	235
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	1 cut(s)	418
NheI	GCTAGC	1 cut(s)	805
NlaIII	CATG	5 cut(s)	172, 332, 526, 690, 796
NlaIV	GGNNCC	2 cut(s)	160, 420
NmeAIII	GCCGAG	3 cut(s)	33, 473, 791
NmuCI	GTSAC	1 cut(s)	152
PaeR7I	CTCGAG	1 cut(s)	41
PceI	AGGCCT	2 cut(s)	108, 257
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 75
PdmI	GAANNNNTTC	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	868
PflFI	GACNNNGTC	1 cut(s)	287
PkrI	GCNGC	4 cut(s)	358, 361, 520, 757
PleI	GAGTC	1 cut(s)	555
PpsI	GAGTC	1 cut(s)	555
Psp124BI	GAGCTC	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	160, 420
PspPI	GGNCC	1 cut(s)	396
PspXI	VCTCGAGB	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SacI	GAGCTC	1 cut(s)	121
SatI	GCNGC	4 cut(s)	357, 360, 519, 756
Sau3AI	GATC	1 cut(s)	418
Sau96I	GGNCC	1 cut(s)	396
SchI	GAGTC	1 cut(s)	555
ScrFI	CCNGG	2 cut(s)	218, 235
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	4 cut(s)	70, 123, 376, 798
SfcI	CTRYAG	1 cut(s)	357
Sfr274I	CTCGAG	1 cut(s)	41
SlaI	CTCGAG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SpeI	ACTAGT	1 cut(s)	487
Sse9I	AATT	6 cut(s)	48, 64, 85, 339, 468, 816
SseBI	AGGCCT	2 cut(s)	108, 257
SsiI	CCGC	6 cut(s)	75, 174, 274, 365, 439, 833
SspMI	CTAG	2 cut(s)	488, 806
SstI	GAGCTC	1 cut(s)	121
StuI	AGGCCT	2 cut(s)	108, 257
StyD4I	CCNGG	2 cut(s)	216, 233
StyI	CCWWGG	2 cut(s)	328, 386
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	3 cut(s)	42, 128, 280
TasI	AATT	6 cut(s)	48, 64, 85, 339, 468, 816
TatI	WGTACW	1 cut(s)	347
TfiI	GAWTC	1 cut(s)	868
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	4 cut(s)	356, 359, 518, 755
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	3 cut(s)	546, 867, 881
TspGWI	ACGGA	5 cut(s)	117, 204, 431, 524, 641
TspRI	CASTG	1 cut(s)	502
Tth111I	GACNNNGTC	1 cut(s)	287
XagI	CCTNNNNNAGG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	48
XhoI	CTCGAG	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	489
XspI	CTAG	2 cut(s)	488, 806
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.