Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002134

Physical Location & Seq

Genomic Coordinates Reverse (-)

28935330 .. 28939699

Gene Structure 4370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1193200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCCAACAACCCCTCGGAGGCCCAGGCCGACGATTTCCTCGAGCAAATTCTCGGCCTTCAGAACTTCGCTTCCGCCGATGCTAATTTGGCGCGAAGCGATGGGGGTTTGGCTGGAGGTCAAGTGTCTCAGGCGTCAATGATGCTGCAGCTGAACTCCGGCAACGGCTCAGGCCACATAGGCGGCGGCGGTGGGGGGTTCCATGGAGGGGTGTTTCCGTTGGGGTTGAGCTTGGAGCAGGGGAAAGCTGGGTTTTTGAAGCACGAGGAGGCTTCTGGGAGCGGGAAGCGGTTCCAAGACGACGTCGTTGATAGTCGAGGTTCATCTGTGAAAAATGTTTTCCATGGCCAACCTATCTCAAATACAGTTGCTGCAGCACCACATCCACCAGCAATGCGACCAAGGGTGCGAGCTAGAAGAGGACAAGCCACCGATCCACACAGCATTGCCGAGCGGTTGCGCCGAGAAAGAATAGCAGAAAGAATCAGAGCATTGCAGGAACTAGTTCCTAGCGTCAACAAGACAGATAGAGCTGCCATGCTTGATGAGATAATGGATTACGTGAAGTTCCTAAGGCTCCAAGTAAAGGTTTTGAGCATGAGTAGATTGGGCGGAGCTGGTGCTGTGGCACCACTTGTAACGGATATTCCACTATCTTCCGTTGAGGAAGAAGGTGGCGAAGGTGGTAGAAACCAACCGGCGTGGGATAAGTGGTCTAATGATGGCACAGAACGACAAGTGGCTAAGCTTATGGAAGAAAACGTTGGGGCTGCAATGCAGTTCCTCCAATCAAAGGCTCTCTGCATCATGCCCATCTCACTGGCCTCAGCAATTTACCACACGCAATCACCGGACACCTCTAGCGTTGTCAAGCCTGAAATGAACCCTCCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

299

Amino Acids

31.65

Weight (kDa)

6.18

Isoelectric Point (pI)

50.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	147 - 192	1.9e-07	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02590 AT4G02590 AT4G02590
fragaria_vesca	FvH4_2g22560 FvH4_2g22560 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900
malus_domestica	MD04G1224700.v1.1 MD05G1206200.v1.1 MD10G1193200.v1.1 MD12G1241500.v1.1
prunus_persica	Prupe.6G343400_v2.0.a1 Prupe.6G343400_v2.0.a1 Prupe.8G232600_v2.0.a1
pyrus_communis	pycom04g19790 pycom10g16690 pycom12g22100
rosa_chinensis	RchiOBHm_Chr3g0451111 RchiOBHm_Chr6g0289601
rosa_laevigata	RLG00000012289 RLG00000025689
rosa_multiflora	Rmu_sc0005376.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428580 Rroxscaffold_7G00177820
rosa_rugosa	Rorug02G0631400 Rorug02G0631500 Rorug02G0631600 Rorug02G0631700 Rorug02G0631800 Rorug06G0205100
rosa_samantha	Rh3AG034400 Rh3BG034700 Rh3CG033400 Rh3DG034400 Rh6AG316600 Rh6BG323000 Rh6CG329600 Rh6DG315000
rosa_wichuraiana	Rw3G002500 Rw6G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	306
AccB1I	GGYRCC	1 cut(s)	628
AccBSI	CCGCTC	2 cut(s)	282, 454
AccII	CGCG	1 cut(s)	94
AciI	CCGC	8 cut(s)	75, 183, 186, 189, 282, 289, 454, 612
AclI	AACGTT	1 cut(s)	762
AclWI	GGATC	1 cut(s)	428
AcoI	YGGCCR	2 cut(s)	3, 346
AcsI	RAATTY	1 cut(s)	48
AcuI	CTGAAG	1 cut(s)	44
AcyI	GRCGYC	2 cut(s)	134, 303
AfiI	CCNNNNNNNGG	4 cut(s)	19, 208, 586, 793
AgsI	TTSAA	1 cut(s)	259
AhlI	ACTAGT	1 cut(s)	502
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	747, 779
AloI	GAACNNNNNNTCC	3 cut(s)	56, 88, 875
AluBI	AGCT	7 cut(s)	151, 231, 248, 413, 533, 617, 748
AluI	AGCT	7 cut(s)	151, 231, 248, 413, 533, 617, 748
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	428
AlwNI	CAGNNNCTG	1 cut(s)	371
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	7 cut(s)	3, 21, 27, 55, 172, 346, 822
ApeKI	GCWGC	6 cut(s)	145, 148, 371, 374, 533, 770
ApoI	RAATTY	1 cut(s)	48
Asp700I	GAANNNNTTC	2 cut(s)	290, 504
AspLEI	GCGC	2 cut(s)	94, 462
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	840
AvaI	CYCGRG	1 cut(s)	41
AxyI	CCTNAGG	1 cut(s)	572
BalI	TGGCCA	2 cut(s)	5, 348
BanI	GGYRCC	1 cut(s)	628
BauI	CACGAG	1 cut(s)	263
BbvCI	CCTCAGC	1 cut(s)	826
BbvI	GCAGC	6 cut(s)	132, 160, 358, 386, 520, 757
BccI	CCATC	3 cut(s)	95, 716, 821
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	132
BcuI	ACTAGT	1 cut(s)	502
BfaI	CTAG	4 cut(s)	414, 503, 510, 861
BfmI	CTRYAG	2 cut(s)	146, 372
BglI	GCCNNNNNGGC	1 cut(s)	180
BisI	GCNGC	8 cut(s)	146, 149, 184, 187, 372, 375, 534, 771
BlpI	GCTNAGC	1 cut(s)	744
BlsI	GCNGC	8 cut(s)	147, 150, 185, 188, 373, 376, 535, 772
Bme1390I	CCNGG	1 cut(s)	26
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	4 cut(s)	200, 293, 578, 630
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	3 cut(s)	70, 132, 813
BpmI	CTGGAG	1 cut(s)	135
Bpu10I	CCTNAGC	2 cut(s)	169, 826
Bpu1102I	GCTNAGC	1 cut(s)	744
BsaAI	YACGTR	1 cut(s)	562
BsaHI	GRCGYC	2 cut(s)	134, 303
BsaJI	CCNNGG	5 cut(s)	15, 24, 202, 343, 401
BsaWI	WCCGGW	1 cut(s)	850
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 208, 586, 793
Bse118I	RCCGGY	1 cut(s)	697
Bse1I	ACTGG	1 cut(s)	825
Bse21I	CCTNAGG	1 cut(s)	572
Bse3DI	GCAATG	4 cut(s)	399, 444, 491, 780
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	5 cut(s)	15, 24, 202, 343, 401
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	4 cut(s)	19, 208, 586, 793
BseMI	GCAATG	4 cut(s)	399, 444, 491, 780
BseMII	CTCAG	3 cut(s)	143, 183, 840
BseNI	ACTGG	1 cut(s)	825
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	6 cut(s)	132, 160, 358, 386, 520, 757
BseYI	CCCAGC	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	7 cut(s)	5, 23, 29, 57, 174, 348, 824
BshNI	GGYRCC	1 cut(s)	628
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	3 cut(s)	159, 698, 851
BslI	CCNNNNNNNGG	4 cut(s)	19, 208, 586, 793
BsmAI	GTCTC	1 cut(s)	132
BsnI	GGCC	7 cut(s)	5, 23, 29, 57, 174, 348, 824
BsoBI	CYCGRG	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	433
Bsp1720I	GCTNAGC	1 cut(s)	744
Bsp19I	CCATGG	2 cut(s)	202, 343
BspACI	CCGC	8 cut(s)	75, 183, 186, 189, 282, 289, 454, 612
BspANI	GGCC	7 cut(s)	5, 23, 29, 57, 174, 348, 824
BspCNI	CTCAG	3 cut(s)	142, 182, 839
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	4 cut(s)	200, 293, 578, 630
BspMAI	CTGCAG	2 cut(s)	150, 376
BspPI	GGATC	1 cut(s)	428
BspT107I	GGYRCC	1 cut(s)	628
BsrBI	CCGCTC	2 cut(s)	282, 454
BsrDI	GCAATG	4 cut(s)	399, 444, 491, 780
BsrFI	RCCGGY	1 cut(s)	697
BsrI	ACTGG	1 cut(s)	825
BssAI	RCCGGY	1 cut(s)	697
BssECI	CCNNGG	5 cut(s)	15, 24, 202, 343, 401
BssMI	GATC	1 cut(s)	433
BssNI	GRCGYC	2 cut(s)	134, 303
BssSI	CACGAG	1 cut(s)	263
BssT1I	CCWWGG	3 cut(s)	202, 343, 401
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	412
BstACI	GRCGYC	2 cut(s)	134, 303
BstBAI	YACGTR	1 cut(s)	562
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	5 cut(s)	129, 169, 572, 744, 826
BstDSI	CCRYGG	2 cut(s)	202, 343
BstF5I	GGATG	1 cut(s)	382
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	94, 462
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 180
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	2 cut(s)	146, 372
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	6 cut(s)	132, 160, 358, 386, 520, 757
BstXI	CCANNNNNNTGG	1 cut(s)	820
Bsu36I	CCTNAGG	1 cut(s)	572
BsuRI	GGCC	7 cut(s)	5, 23, 29, 57, 174, 348, 824
BtgI	CCRYGG	2 cut(s)	202, 343
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	1 cut(s)	818
Cac8I	GCNNGC	1 cut(s)	411
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	2 cut(s)	94, 462
Cfr10I	RCCGGY	1 cut(s)	697
Cfr13I	GGNCC	1 cut(s)	22
CseI	GACGC	2 cut(s)	123, 502
CspCI	CAANNNNNGTGG	2 cut(s)	683, 718
CviAII	CATG	5 cut(s)	203, 344, 538, 598, 808
DdeI	CTNAG	5 cut(s)	129, 169, 572, 744, 826
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
EaeI	YGGCCR	2 cut(s)	3, 346
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
EciI	GGCGGA	2 cut(s)	64, 627
Eco130I	CCWWGG	3 cut(s)	202, 343, 401
Eco57I	CTGAAG	1 cut(s)	44
Eco81I	CCTNAGG	1 cut(s)	572
Eco88I	CYCGRG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	3 cut(s)	202, 343, 401
ErhI	CCWWGG	3 cut(s)	202, 343, 401
FaeI	CATG	5 cut(s)	206, 347, 541, 601, 811
FaiI	YATR	7 cut(s)	179, 204, 345, 539, 599, 752, 809
FatI	CATG	5 cut(s)	202, 343, 537, 597, 807
FauI	CCCGC	1 cut(s)	275
Fnu4HI	GCNGC	8 cut(s)	146, 149, 184, 187, 372, 375, 534, 771
FokI	GGATG	1 cut(s)	369
Fsp4HI	GCNGC	8 cut(s)	146, 149, 184, 187, 372, 375, 534, 771
FspBI	CTAG	4 cut(s)	414, 503, 510, 861
GlaI	GCGC	2 cut(s)	93, 461
GluI	GCNGC	8 cut(s)	146, 149, 184, 187, 372, 375, 534, 771
GsaI	CCCAGC	1 cut(s)	252
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	7 cut(s)	5, 23, 29, 57, 174, 348, 824
HapII	CCGG	3 cut(s)	159, 698, 851
HgaI	GACGC	2 cut(s)	123, 502
HhaI	GCGC	2 cut(s)	94, 462
Hin1I	GRCGYC	2 cut(s)	134, 303
Hin1II	CATG	5 cut(s)	206, 347, 541, 601, 811
Hin6I	GCGC	2 cut(s)	92, 460
HinP1I	GCGC	2 cut(s)	92, 460
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	746
HinfI	GANTC	1 cut(s)	483
HpaII	CCGG	3 cut(s)	159, 698, 851
HphI	GGTGA	1 cut(s)	840
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	3 cut(s)	19, 63, 488
Hpy8I	GTNNAC	1 cut(s)	517
Hpy99I	CGWCG	3 cut(s)	35, 305, 308
HpyAV	CCTTC	3 cut(s)	68, 665, 674
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	3 cut(s)	303, 561, 762
HpyCH4V	TGCA	6 cut(s)	148, 374, 496, 773, 778, 804
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 180
HpyF3I	CTNAG	5 cut(s)	129, 169, 572, 744, 826
HpySE526I	ACGT	3 cut(s)	303, 561, 762
Hsp92I	GRCGYC	2 cut(s)	134, 303
Hsp92II	CATG	5 cut(s)	206, 347, 541, 601, 811
HspAI	GCGC	2 cut(s)	92, 460
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	4 cut(s)	235, 279, 582, 614
Lsp1109I	GCAGC	6 cut(s)	132, 160, 358, 386, 520, 757
LweI	GCATC	3 cut(s)	70, 132, 813
MaeI	CTAG	4 cut(s)	414, 503, 510, 861
MaeII	ACGT	3 cut(s)	303, 561, 762
MaeIII	GTNAC	1 cut(s)	637
MalI	GATC	1 cut(s)	435
MbiI	CCGCTC	2 cut(s)	282, 454
MboI	GATC	1 cut(s)	433
MboII	GAAGA	4 cut(s)	429, 648, 680, 767
MlsI	TGGCCA	2 cut(s)	5, 348
MluCI	AATT	3 cut(s)	48, 85, 831
MluNI	TGGCCA	2 cut(s)	5, 348
Mox20I	TGGCCA	2 cut(s)	5, 348
MroXI	GAANNNNTTC	2 cut(s)	290, 504
MscI	TGGCCA	2 cut(s)	5, 348
Msp20I	TGGCCA	2 cut(s)	5, 348
MspA1I	CMGCKG	1 cut(s)	151
MspI	CCGG	3 cut(s)	159, 698, 851
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	89, 180
NcoI	CCATGG	2 cut(s)	202, 343
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	5 cut(s)	206, 347, 541, 601, 811
NlaIV	GGNNCC	4 cut(s)	200, 293, 578, 630
NmeAIII	GCCGAG	3 cut(s)	33, 475, 488
PaeR7I	CTCGAG	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 75
PdmI	GAANNNNTTC	2 cut(s)	290, 504
PfeI	GAWTC	1 cut(s)	483
PflFI	GACNNNGTC	1 cut(s)	302
PkrI	GCNGC	8 cut(s)	147, 150, 185, 188, 373, 376, 535, 772
Ppu21I	YACGTR	1 cut(s)	562
Psp1406I	AACGTT	1 cut(s)	762
Psp6I	CCWGG	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	4 cut(s)	200, 293, 578, 630
PspPI	GGNCC	1 cut(s)	22
PspXI	VCTCGAGB	1 cut(s)	41
PstI	CTGCAG	2 cut(s)	150, 376
PstNI	CAGNNNCTG	1 cut(s)	371
PsyI	GACNNNGTC	1 cut(s)	302
PvuII	CAGCTG	1 cut(s)	151
SatI	GCNGC	8 cut(s)	146, 149, 184, 187, 372, 375, 534, 771
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	26
SfaNI	GCATC	3 cut(s)	70, 132, 813
SfcI	CTRYAG	2 cut(s)	146, 372
Sfr274I	CTCGAG	1 cut(s)	41
SlaI	CTCGAG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SpeI	ACTAGT	1 cut(s)	502
Sse9I	AATT	3 cut(s)	48, 85, 831
SsiI	CCGC	8 cut(s)	75, 183, 186, 189, 282, 289, 454, 612
SspMI	CTAG	4 cut(s)	414, 503, 510, 861
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	3 cut(s)	202, 343, 401
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	3 cut(s)	306, 564, 765
TaqI	TCGA	2 cut(s)	42, 316
TasI	AATT	3 cut(s)	48, 85, 831
TauI	GCSGC	2 cut(s)	186, 189
TfiI	GAWTC	1 cut(s)	483
TscAI	CASTG	1 cut(s)	825
TseI	GCWGC	6 cut(s)	145, 148, 371, 374, 533, 770
TspDTI	ATGAA	2 cut(s)	312, 896
TspGWI	ACGGA	3 cut(s)	207, 649, 656
TspRI	CASTG	1 cut(s)	825
Tth111I	GACNNNGTC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	48
XhoI	CTCGAG	1 cut(s)	41
XmnI	GAANNNNTTC	2 cut(s)	290, 504
XspI	CTAG	4 cut(s)	414, 503, 510, 861
ZraI	GACGTC	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.