Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002134

Physical Location & Seq

Genomic Coordinates Reverse (-)

48996306 .. 49001026

Gene Structure 4721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00428580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCGGGCAATCCGCCTGAGGGACTCGGAGACGATTTCTTCGAGCAGATCATGGCCGTTCCTCAAACGTACAGCGGCTCCGGCTCTGCTGCTGACTCAGCTGGTGGTGGCTATGGAGACGTGGGGACCATGCCCATGGTGCTGCAGCTGGGCTCCGGAACCGGGTCTTCTTCTGGCTCCGGCGTCGGGTACAGAGGAGGAGTCGGGTCGGTTGGGATGGGTATGGGCATGCCTTTGGGTCTGAATTTGGAGCAGGGGTTTCTTGGACAAGACAGGTTCAGAGATGAAGTTGAACCCAACTCTAACACCAACAACAACAGTACCAACAACAACAACAACGGTAACAGTTCTAATTTGATGGCATGGCAGGAAAGAGATTCGGTTCACATGACGAGTTTGTTTCCGCCATTTGGACATTTGCAAAACCACTCTGTCCGGCCAACGCCGCCGCCGCCGCCTCCTCAGCCTCACCAGCAGTTTCATAGCCAACCAGCACCGGGGCCAGTTGCTGCTGCCCATCACCCTCCTGCTATCCGCCCAAGGGTCCGAGCAAGACGAGGTCAAGCAACAGATCCCCACAGTATTGCCGAGCGGACAGATAGGGCAGCTATGCTTGACGAAATCGTCGATTATGTGAAATTTCTAAGGCTCCAAGTAAAGGTTTTGAGCATGAGTAGACTCGGAGGAGCAGGTGCAGTGGCTCAGCTTGTAGCTGATGTACCCTTATCAGCAGTTGAGGGAGAGGGGATTGAAGGAGGAACCAATAATCAACAAGCATGGGAGAAGTGGTCAAATGATGGCACAGAGCAACAGGTAGCTAAGCTCATGGAAGAAGATGTAGGAGCTGCCATGCAATACCTTCAATCCAAGGCACTTTGCATCATGCCCATATCACTCGCTCCTGCGATTTTCCGGACACATCAGCCGGACGCAACGACAATGGTTAAGCCGGAATCACACAACTCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

323

Amino Acids

34.19

Weight (kDa)

5.42

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02590 AT4G02590 AT4G02590
fragaria_vesca	FvH4_2g22560 FvH4_2g22560 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900
malus_domestica	MD04G1224700.v1.1 MD05G1206200.v1.1 MD10G1193200.v1.1 MD12G1241500.v1.1
prunus_persica	Prupe.6G343400_v2.0.a1 Prupe.6G343400_v2.0.a1 Prupe.8G232600_v2.0.a1
pyrus_communis	pycom04g19790 pycom10g16690 pycom12g22100
rosa_chinensis	RchiOBHm_Chr3g0451111 RchiOBHm_Chr6g0289601
rosa_laevigata	RLG00000012289 RLG00000025689
rosa_multiflora	Rmu_sc0005376.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428580 Rroxscaffold_7G00177820
rosa_rugosa	Rorug02G0631400 Rorug02G0631500 Rorug02G0631600 Rorug02G0631700 Rorug02G0631800 Rorug06G0205100
rosa_samantha	Rh3AG034400 Rh3BG034700 Rh3CG033400 Rh3DG034400 Rh6AG316600 Rh6BG323000 Rh6CG329600 Rh6DG315000
rosa_wichuraiana	Rw3G002500 Rw6G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	680
AasI	GACNNNNNNGTC	1 cut(s)	623
Acc36I	ACCTGC	1 cut(s)	680
AccBSI	CCGCTC	1 cut(s)	592
AccI	GTMKAC	1 cut(s)	676
AccIII	TCCGGA	2 cut(s)	155, 912
AclWI	GGATC	1 cut(s)	566
AcoI	YGGCCR	2 cut(s)	54, 437
AcsI	RAATTY	2 cut(s)	244, 638
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	4 cut(s)	71, 191, 322, 720
AfiI	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 410, 497, 541, 658
AgsI	TTSAA	3 cut(s)	293, 752, 863
AjiI	CACGTC	1 cut(s)	121
AluBI	AGCT	8 cut(s)	101, 148, 608, 706, 713, 818, 823, 845
AluI	AGCT	8 cut(s)	101, 148, 608, 706, 713, 818, 823, 845
Alw26I	GTCTC	2 cut(s)	24, 111
AlwI	GGATC	1 cut(s)	566
AlwNI	CAGNNNCTG	1 cut(s)	509
Aor13HI	TCCGGA	2 cut(s)	155, 912
AoxI	GGCC	3 cut(s)	54, 437, 500
ApeKI	GCWGC	7 cut(s)	89, 142, 145, 509, 512, 605, 845
ApoI	RAATTY	2 cut(s)	244, 638
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspS9I	GGNCC	3 cut(s)	126, 500, 544
AsuC2I	CCSGG	2 cut(s)	163, 498
AsuHPI	GGTGA	2 cut(s)	461, 512
AvaII	GGWCC	2 cut(s)	126, 544
AxyI	CCTNAGG	1 cut(s)	18
BaeI	ACNNNNGTAYC	2 cut(s)	304, 337
BanII	GRGCYC	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	462
BbvI	GCAGC	7 cut(s)	76, 129, 157, 496, 499, 617, 832
BccI	CCATC	4 cut(s)	211, 352, 525, 791
BceAI	ACGGC	1 cut(s)	41
BcnI	CCSGG	2 cut(s)	163, 498
BcoDI	GTCTC	2 cut(s)	24, 111
BfaI	CTAG	1 cut(s)	970
BfmI	CTRYAG	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	680
BlpI	GCTNAGC	2 cut(s)	702, 819
Bme1390I	CCNGG	2 cut(s)	163, 498
Bme18I	GGWCC	2 cut(s)	126, 544
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	3 cut(s)	126, 500, 544
BmiI	GGNNCC	9 cut(s)	79, 127, 154, 160, 178, 501, 545, 650, 760
BmrFI	CCNGG	2 cut(s)	163, 498
BmsI	GCATC	1 cut(s)	888
BpiI	GAAGAC	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	462
Bpu1102I	GCTNAGC	2 cut(s)	702, 819
BpuMI	CCSGG	2 cut(s)	163, 498
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	4 cut(s)	135, 497, 539, 867
BsaWI	WCCGGW	2 cut(s)	155, 912
BsaXI	ACNNNNNCTCC	6 cut(s)	62, 92, 242, 272, 773, 803
Bsc4I	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 410, 497, 541, 658
Bse1I	ACTGG	1 cut(s)	503
Bse21I	CCTNAGG	1 cut(s)	18
BseAI	TCCGGA	2 cut(s)	155, 912
BseDI	CCNNGG	4 cut(s)	135, 497, 539, 867
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 410, 497, 541, 658
BseMII	CTCAG	4 cut(s)	9, 111, 476, 716
BseNI	ACTGG	1 cut(s)	503
BseRI	GAGGAG	4 cut(s)	210, 213, 450, 699
BseXI	GCAGC	7 cut(s)	76, 129, 157, 496, 499, 617, 832
BseYI	CCCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	714
BshFI	GGCC	3 cut(s)	56, 439, 502
BsiSI	CCGG	9 cut(s)	81, 156, 162, 180, 436, 497, 913, 926, 950
BslFI	GGGAC	2 cut(s)	36, 139
BslI	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 410, 497, 541, 658
BsmAI	GTCTC	2 cut(s)	24, 111
BsmBI	CGTCTC	2 cut(s)	24, 111
BsmFI	GGGAC	2 cut(s)	36, 139
BsnI	GGCC	3 cut(s)	56, 439, 502
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp13I	TCCGGA	2 cut(s)	155, 912
Bsp143I	GATC	2 cut(s)	48, 571
Bsp1720I	GCTNAGC	2 cut(s)	702, 819
Bsp19I	CCATGG	1 cut(s)	135
BspANI	GGCC	3 cut(s)	56, 439, 502
BspCNI	CTCAG	4 cut(s)	10, 110, 475, 715
BspEI	TCCGGA	2 cut(s)	155, 912
BspLI	GGNNCC	9 cut(s)	79, 127, 154, 160, 178, 501, 545, 650, 760
BspMAI	CTGCAG	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	680
BspPI	GGATC	1 cut(s)	566
BsrBI	CCGCTC	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	503
BssECI	CCNNGG	4 cut(s)	135, 497, 539, 867
BssMI	GATC	2 cut(s)	48, 571
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	3 cut(s)	135, 539, 867
Bst4CI	ACNGT	4 cut(s)	320, 341, 347, 581
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	7, 230
BstDEI	CTNAG	6 cut(s)	18, 97, 462, 644, 702, 819
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	51, 574
BstMAI	GTCTC	2 cut(s)	24, 111
BstMBI	GATC	2 cut(s)	48, 571
BstMWI	GCNNNNNNNGC	8 cut(s)	81, 98, 139, 445, 451, 454, 463, 472
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	161, 496
BstSFI	CTRYAG	1 cut(s)	143
BstV1I	GCAGC	7 cut(s)	76, 129, 157, 496, 499, 617, 832
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	571
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	571
Bsu36I	CCTNAGG	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	56, 439, 502
BtgI	CCRYGG	1 cut(s)	135
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	1 cut(s)	702
BveI	ACCTGC	1 cut(s)	680
Cac8I	GCNNGC	2 cut(s)	7, 230
CaiI	CAGNNNCTG	1 cut(s)	509
Cfr13I	GGNCC	3 cut(s)	126, 500, 544
CseI	GACGC	2 cut(s)	172, 938
Csp6I	GTAC	4 cut(s)	70, 190, 321, 719
CviQI	GTAC	4 cut(s)	70, 190, 321, 719
DdeI	CTNAG	6 cut(s)	18, 97, 462, 644, 702, 819
DpnI	GATC	2 cut(s)	50, 573
DpnII	GATC	2 cut(s)	48, 571
DrdI	GACNNNNNNGTC	1 cut(s)	623
DseDI	GACNNNNNNGTC	1 cut(s)	623
EaeI	YGGCCR	2 cut(s)	54, 437
EciI	GGCGGA	2 cut(s)	393, 524
Eco130I	CCWWGG	3 cut(s)	135, 539, 867
Eco24I	GRGCYC	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	126, 544
Eco81I	CCTNAGG	1 cut(s)	18
EcoT14I	CCWWGG	3 cut(s)	135, 539, 867
EcoT38I	GRGCYC	1 cut(s)	155
ErhI	CCWWGG	3 cut(s)	135, 539, 867
Esp3I	CGTCTC	2 cut(s)	24, 111
FaqI	GGGAC	2 cut(s)	36, 139
FblI	GTMKAC	1 cut(s)	676
FokI	GGATG	1 cut(s)	229
FriOI	GRGCYC	1 cut(s)	155
FspBI	CTAG	1 cut(s)	970
GsaI	CCCAGC	1 cut(s)	152
HaeIII	GGCC	3 cut(s)	56, 439, 502
HapII	CCGG	9 cut(s)	81, 156, 162, 180, 436, 497, 913, 926, 950
HgaI	GACGC	2 cut(s)	172, 938
Hin1I	GRCGYC	1 cut(s)	183
HinfI	GANTC	6 cut(s)	24, 95, 201, 377, 678, 953
HpaII	CCGG	9 cut(s)	81, 156, 162, 180, 436, 497, 913, 926, 950
HphI	GGTGA	2 cut(s)	461, 512
Hpy166II	GTNNAC	2 cut(s)	385, 677
Hpy188I	TCNGA	5 cut(s)	29, 243, 281, 548, 683
Hpy188III	TCNNGA	2 cut(s)	156, 913
Hpy8I	GTNNAC	2 cut(s)	385, 677
Hpy99I	CGWCG	2 cut(s)	188, 629
HpyAV	CCTTC	2 cut(s)	746, 869
HpyCH4III	ACNGT	4 cut(s)	320, 341, 347, 581
HpyCH4IV	ACGT	2 cut(s)	68, 120
HpyCH4V	TGCA	5 cut(s)	145, 421, 695, 853, 879
HpyF10VI	GCNNNNNNNGC	8 cut(s)	81, 98, 139, 445, 451, 454, 463, 472
HpyF3I	CTNAG	6 cut(s)	18, 97, 462, 644, 702, 819
HpySE526I	ACGT	2 cut(s)	68, 120
Hsp92I	GRCGYC	1 cut(s)	183
Kpn2I	TCCGGA	2 cut(s)	155, 912
Kzo9I	GATC	2 cut(s)	48, 571
LmnI	GCTCC	8 cut(s)	83, 158, 182, 250, 654, 686, 842, 904
Lsp1109I	GCAGC	7 cut(s)	76, 129, 157, 496, 499, 617, 832
LweI	GCATC	1 cut(s)	888
MaeI	CTAG	1 cut(s)	970
MaeII	ACGT	2 cut(s)	68, 120
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	2 cut(s)	50, 573
MbiI	CCGCTC	1 cut(s)	592
MboI	GATC	2 cut(s)	48, 571
MboII	GAAGA	6 cut(s)	31, 159, 162, 842, 845, 957
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	3 cut(s)	244, 352, 638
MlyI	GAGTC	4 cut(s)	18, 89, 210, 672
MroI	TCCGGA	2 cut(s)	155, 912
MseI	TTAA	1 cut(s)	945
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	3 cut(s)	75, 101, 148
MspI	CCGG	9 cut(s)	81, 156, 162, 180, 436, 497, 913, 926, 950
MspR9I	CCNGG	2 cut(s)	163, 498
MwoI	GCNNNNNNNGC	8 cut(s)	81, 98, 139, 445, 451, 454, 463, 472
NciI	CCSGG	2 cut(s)	163, 498
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	48, 571
NlaIV	GGNNCC	9 cut(s)	79, 127, 154, 160, 178, 501, 545, 650, 760
NmeAIII	GCCGAG	1 cut(s)	613
NspI	RCATGY	1 cut(s)	232
PaeI	GCATGC	1 cut(s)	232
PaqCI	CACCTGC	1 cut(s)	680
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 624
PfeI	GAWTC	2 cut(s)	377, 953
PflFI	GACNNNGTC	1 cut(s)	558
PleI	GAGTC	4 cut(s)	18, 89, 209, 672
PpsI	GAGTC	4 cut(s)	18, 89, 209, 672
PspFI	CCCAGC	1 cut(s)	148
PspN4I	GGNNCC	9 cut(s)	79, 127, 154, 160, 178, 501, 545, 650, 760
PspPI	GGNCC	3 cut(s)	126, 500, 544
PstI	CTGCAG	1 cut(s)	147
PstNI	CAGNNNCTG	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	571
PsyI	GACNNNGTC	1 cut(s)	558
PvuII	CAGCTG	2 cut(s)	101, 148
RsaI	GTAC	4 cut(s)	71, 191, 322, 720
RsaNI	GTAC	4 cut(s)	70, 190, 321, 719
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	945
Sau3AI	GATC	2 cut(s)	48, 571
Sau96I	GGNCC	3 cut(s)	126, 500, 544
SchI	GAGTC	4 cut(s)	18, 89, 210, 672
ScrFI	CCNGG	2 cut(s)	163, 498
SduI	GDGCHC	1 cut(s)	155
SfaNI	GCATC	1 cut(s)	888
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	2 cut(s)	126, 544
SmiMI	CAYNNNNRTG	1 cut(s)	134
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	3 cut(s)	244, 352, 638
SspMI	CTAG	1 cut(s)	970
StyD4I	CCNGG	2 cut(s)	161, 496
StyI	CCWWGG	3 cut(s)	135, 539, 867
TaaI	ACNGT	4 cut(s)	320, 341, 347, 581
TaiI	ACGT	2 cut(s)	71, 123
TaqI	TCGA	2 cut(s)	42, 627
TasI	AATT	3 cut(s)	244, 352, 638
TauI	GCSGC	5 cut(s)	78, 448, 451, 454, 457
TfiI	GAWTC	2 cut(s)	377, 953
Tru1I	TTAA	1 cut(s)	945
Tru9I	TTAA	1 cut(s)	945
TscAI	CASTG	1 cut(s)	702
TseI	GCWGC	7 cut(s)	89, 142, 145, 509, 512, 605, 845
TspDTI	ATGAA	2 cut(s)	300, 470
TspRI	CASTG	1 cut(s)	702
Tth111I	GACNNNGTC	1 cut(s)	558
VpaK11BI	GGWCC	2 cut(s)	126, 544
XapI	RAATTY	2 cut(s)	244, 638
XceI	RCATGY	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	676
XspI	CTAG	1 cut(s)	970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.