Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002134

Physical Location & Seq

Genomic Coordinates Forward (+)

32697966 .. 32704282

Gene Structure 6317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0205100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCGTCGTCGAAGCTGATCTCGTCGTCGTCAAATTCCCGCAACTCCGACCTCTCCCGACGCCCCTCTTCCAATTCCACAAAACCCTCACCCTCCTCCTCCTCCGCCGCCGCCAACCAAGCCCTAAACACCACCACCACCGCCGCCGGCTACATTAATCCCACGCCGGTCCAGCTCGGCTCGATGGCCGTCAACGGCCTCTTCTACAACAACAGCCTTTCCACCTCGGAGCTCGAAGCGCAAATAAACCTGATCGACACCGCCGGCTTGGAAATCAACTCCGCCGCCAGCGTCAGCTCGCCCCCGCCGCCGCCGAGGCCGAAGACGGTCGACGAGGTCTGGCAGGAGATTGTGTCCGGCGAGAGCCGGAAGGGGTGTAAAGAAGAGGTGACTGATGAGTTGATGACTCTCGAGGACTTTCTGGCTCGGGCCGGCGCGGTGGAGGATAACGACATTAAGGATTTTCACCTTGTGCCGCCGCCGCCGCCGGAGACGGAGAGGTTGAGCGGAGGACTGAGCGGAGGGATGTTTGGGTTCGATCAGATCGCACTGAGCCCGTTCCAGTCGATTGAGAAGATTGAAAAGGTTGAGGGATCCATAGTTGGCTTCGGAAATGGTGCTGAGGTGGTGGCGAGTGGAGGAGGGAGGGGGAGAGGGAAGAGAGCCAGGGCTGTTTTGGAGCCAATGGATAAGGCTGCACAGCAGAGGCAGAGGAGGATGATCAAGAATCGGGAGTCGGCGGCACGGTCCAGAGAGAGGAAGCAGGCTTACCAAGTTGAATTGGAGTCGATGGCGGTTAGATTAGAGGAGGAGAACGAGCGGCTTTTGAAAGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

279

Amino Acids

30.02

Weight (kDa)

5.55

Isoelectric Point (pI)

54.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	233 - 278	3.8e-11	bZIP transcription factor
bZIP_2	PF07716	233 - 278	5.8e-09	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02590 AT4G02590 AT4G02590
fragaria_vesca	FvH4_2g22560 FvH4_2g22560 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900 FvH4_6g02900
malus_domestica	MD04G1224700.v1.1 MD05G1206200.v1.1 MD10G1193200.v1.1 MD12G1241500.v1.1
prunus_persica	Prupe.6G343400_v2.0.a1 Prupe.6G343400_v2.0.a1 Prupe.8G232600_v2.0.a1
pyrus_communis	pycom04g19790 pycom10g16690 pycom12g22100
rosa_chinensis	RchiOBHm_Chr3g0451111 RchiOBHm_Chr6g0289601
rosa_laevigata	RLG00000012289 RLG00000025689
rosa_multiflora	Rmu_sc0005376.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428580 Rroxscaffold_7G00177820
rosa_rugosa	Rorug02G0631400 Rorug02G0631500 Rorug02G0631600 Rorug02G0631700 Rorug02G0631800 Rorug06G0205100
rosa_samantha	Rh3AG034400 Rh3BG034700 Rh3CG033400 Rh3DG034400 Rh6AG316600 Rh6BG323000 Rh6CG329600 Rh6DG315000
rosa_wichuraiana	Rw3G002500 Rw6G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	507, 519, 820
AccI	GTMKAC	1 cut(s)	330
AccII	CGCG	1 cut(s)	437
AclWI	GGATC	2 cut(s)	588, 601
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	34
AcyI	GRCGYC	2 cut(s)	5, 61
AdeI	CACNNNGTG	1 cut(s)	472
AfiI	CCNNNNNNNGG	1 cut(s)	756
AgsI	TTSAA	3 cut(s)	581, 779, 829
AjnI	CCWGG	1 cut(s)	665
AluBI	AGCT	4 cut(s)	16, 175, 232, 297
AluI	AGCT	4 cut(s)	16, 175, 232, 297
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	2 cut(s)	588, 601
Ama87I	CYCGRG	2 cut(s)	410, 426
AoxI	GGCC	4 cut(s)	186, 196, 317, 429
ApeKI	GCWGC	1 cut(s)	695
ApoI	RAATTY	1 cut(s)	34
AseI	ATTAAT	1 cut(s)	156
AspLEI	GCGC	2 cut(s)	241, 437
AspS9I	GGNCC	3 cut(s)	169, 429, 747
AsuHPI	GGTGA	3 cut(s)	81, 400, 458
AvaI	CYCGRG	2 cut(s)	410, 426
AvaII	GGWCC	2 cut(s)	169, 747
BamHI	GGATCC	1 cut(s)	593
BanII	GRGCYC	2 cut(s)	234, 557
BarI	GAAGNNNNNNTAC	2 cut(s)	752, 784
BbsI	GAAGAC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	234
BbvCI	CCTCAGC	1 cut(s)	621
BbvI	GCAGC	1 cut(s)	682
BccI	CCATC	2 cut(s)	178, 784
BceAI	ACGGC	2 cut(s)	173, 211
BciT130I	CCWGG	1 cut(s)	667
BclI	TGATCA	1 cut(s)	720
BcoDI	GTCTC	1 cut(s)	485
BglI	GCCNNNNNGGC	1 cut(s)	316
Bme1390I	CCNGG	1 cut(s)	667
Bme18I	GGWCC	2 cut(s)	169, 747
BmeT110I	CYCGRG	2 cut(s)	410, 426
BmgT120I	GGNCC	3 cut(s)	169, 429, 747
BmiI	GGNNCC	2 cut(s)	595, 681
BmrFI	CCNGG	1 cut(s)	667
BpiI	GAAGAC	1 cut(s)	329
Bpu10I	CCTNAGC	1 cut(s)	621
BsaHI	GRCGYC	2 cut(s)	5, 61
BsaJI	CCNNGG	3 cut(s)	225, 314, 666
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	756
Bse118I	RCCGGY	4 cut(s)	146, 166, 263, 431
Bse1I	ACTGG	1 cut(s)	562
BseBI	CCWGG	1 cut(s)	667
BseDI	CCNNGG	3 cut(s)	225, 314, 666
BseGI	GGATG	2 cut(s)	531, 723
BseLI	CCNNNNNNNGG	1 cut(s)	756
BseMII	CTCAG	3 cut(s)	506, 542, 612
BseNI	ACTGG	1 cut(s)	562
BseRI	GAGGAG	7 cut(s)	85, 88, 91, 654, 727, 821, 824
BseXI	GCAGC	1 cut(s)	682
BsgI	GTGCAG	1 cut(s)	681
Bsh1236I	CGCG	1 cut(s)	437
Bsh1285I	CGRYCG	1 cut(s)	330
BshFI	GGCC	4 cut(s)	188, 198, 319, 431
BsiEI	CGRYCG	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	2 cut(s)	410, 426
BsiSI	CCGG	7 cut(s)	147, 167, 264, 357, 367, 432, 488
BslI	CCNNNNNNNGG	1 cut(s)	756
BsmAI	GTCTC	1 cut(s)	485
BsmBI	CGTCTC	1 cut(s)	485
BsnI	GGCC	4 cut(s)	188, 198, 319, 431
BsoBI	CYCGRG	2 cut(s)	410, 426
Bsp1286I	GDGCHC	2 cut(s)	234, 557
Bsp143I	GATC	6 cut(s)	18, 252, 538, 543, 593, 720
BspANI	GGCC	4 cut(s)	188, 198, 319, 431
BspCNI	CTCAG	3 cut(s)	507, 543, 613
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	2 cut(s)	595, 681
BspPI	GGATC	2 cut(s)	588, 601
BsrBI	CCGCTC	3 cut(s)	507, 519, 820
BsrFI	RCCGGY	4 cut(s)	146, 166, 263, 431
BsrI	ACTGG	1 cut(s)	562
BssAI	RCCGGY	4 cut(s)	146, 166, 263, 431
BssECI	CCNNGG	3 cut(s)	225, 314, 666
BssMI	GATC	6 cut(s)	18, 252, 538, 543, 593, 720
BssNI	GRCGYC	2 cut(s)	5, 61
Bst2UI	CCWGG	1 cut(s)	667
Bst4CI	ACNGT	2 cut(s)	328, 747
Bst6I	CTCTTC	4 cut(s)	73, 206, 378, 653
BstACI	GRCGYC	2 cut(s)	5, 61
BstC8I	GCNNGC	6 cut(s)	148, 265, 289, 299, 433, 765
BstDEI	CTNAG	3 cut(s)	515, 551, 621
BstF5I	GGATG	2 cut(s)	531, 723
BstFNI	CGCG	1 cut(s)	437
BstHHI	GCGC	2 cut(s)	241, 437
BstKTI	GATC	6 cut(s)	21, 255, 541, 546, 596, 723
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	6 cut(s)	18, 252, 538, 543, 593, 720
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	7 cut(s)	119, 172, 238, 307, 316, 481, 484
BstNI	CCWGG	1 cut(s)	667
BstSCI	CCNGG	1 cut(s)	665
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	1 cut(s)	682
BstV2I	GAAGAC	1 cut(s)	329
BstX2I	RGATCY	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	593
BsuRI	GGCC	4 cut(s)	188, 198, 319, 431
BtsCI	GGATG	2 cut(s)	531, 723
BtsIMutI	CAGTG	1 cut(s)	548
Cac8I	GCNNGC	6 cut(s)	148, 265, 289, 299, 433, 765
CfoI	GCGC	2 cut(s)	241, 437
Cfr10I	RCCGGY	4 cut(s)	146, 166, 263, 431
Cfr13I	GGNCC	3 cut(s)	169, 429, 747
CseI	GACGC	2 cut(s)	69, 280
DdeI	CTNAG	3 cut(s)	515, 551, 621
DpnI	GATC	6 cut(s)	20, 254, 540, 545, 595, 722
DpnII	GATC	6 cut(s)	18, 252, 538, 543, 593, 720
DraIII	CACNNNGTG	1 cut(s)	472
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	4 cut(s)	73, 206, 378, 653
EarI	CTCTTC	4 cut(s)	73, 206, 378, 653
EciI	GGCGGA	2 cut(s)	94, 271
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	2 cut(s)	234, 557
Eco47I	GGWCC	2 cut(s)	169, 747
Eco53kI	GAGCTC	1 cut(s)	232
Eco88I	CYCGRG	2 cut(s)	410, 426
EcoICRI	GAGCTC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	665
EcoT38I	GRGCYC	2 cut(s)	234, 557
Esp3I	CGTCTC	1 cut(s)	485
FaiI	YATR	1 cut(s)	599
FauI	CCCGC	2 cut(s)	47, 312
FbaI	TGATCA	1 cut(s)	720
FblI	GTMKAC	1 cut(s)	330
FokI	GGATG	2 cut(s)	538, 730
FriOI	GRGCYC	2 cut(s)	234, 557
GlaI	GCGC	2 cut(s)	240, 436
HaeIII	GGCC	4 cut(s)	188, 198, 319, 431
HapII	CCGG	7 cut(s)	147, 167, 264, 357, 367, 432, 488
HgaI	GACGC	2 cut(s)	69, 280
HhaI	GCGC	2 cut(s)	241, 437
Hin1I	GRCGYC	2 cut(s)	5, 61
Hin6I	GCGC	2 cut(s)	239, 435
HinP1I	GCGC	2 cut(s)	239, 435
HincII	GTYRAC	2 cut(s)	193, 331
HindII	GTYRAC	2 cut(s)	193, 331
HinfI	GANTC	4 cut(s)	406, 727, 734, 785
HpaII	CCGG	7 cut(s)	147, 167, 264, 357, 367, 432, 488
HphI	GGTGA	3 cut(s)	81, 400, 458
Hpy166II	GTNNAC	2 cut(s)	193, 331
Hpy188I	TCNGA	4 cut(s)	49, 229, 543, 611
Hpy188III	TCNNGA	5 cut(s)	57, 410, 724, 731, 750
Hpy8I	GTNNAC	2 cut(s)	193, 331
Hpy99I	CGWCG	6 cut(s)	10, 13, 28, 31, 63, 335
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	2 cut(s)	328, 747
HpyCH4V	TGCA	1 cut(s)	698
HpyF10VI	GCNNNNNNNGC	7 cut(s)	119, 172, 238, 307, 316, 481, 484
HpyF3I	CTNAG	3 cut(s)	515, 551, 621
Hsp92I	GRCGYC	2 cut(s)	5, 61
HspAI	GCGC	2 cut(s)	239, 435
KroI	GCCGGC	3 cut(s)	146, 263, 431
KroNI	GCCGGC	3 cut(s)	148, 265, 433
Ksp22I	TGATCA	1 cut(s)	720
Kzo9I	GATC	6 cut(s)	18, 252, 538, 543, 593, 720
LmnI	GCTCC	2 cut(s)	229, 679
Lsp1109I	GCAGC	1 cut(s)	682
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	6 cut(s)	20, 254, 540, 545, 595, 722
MbiI	CCGCTC	3 cut(s)	507, 519, 820
MboI	GATC	6 cut(s)	18, 252, 538, 543, 593, 720
MboII	GAAGA	6 cut(s)	60, 193, 334, 395, 586, 670
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	2 cut(s)	234, 557
MluCI	AATT	3 cut(s)	34, 73, 779
MlyI	GAGTC	3 cut(s)	400, 743, 794
MmeI	TCCRAC	1 cut(s)	72
MroNI	GCCGGC	3 cut(s)	146, 263, 431
MseI	TTAA	2 cut(s)	156, 456
MspI	CCGG	7 cut(s)	147, 167, 264, 357, 367, 432, 488
MspR9I	CCNGG	1 cut(s)	667
MvaI	CCWGG	1 cut(s)	667
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	7 cut(s)	119, 172, 238, 307, 316, 481, 484
NaeI	GCCGGC	3 cut(s)	148, 265, 433
NdeII	GATC	6 cut(s)	18, 252, 538, 543, 593, 720
NgoMIV	GCCGGC	3 cut(s)	146, 263, 431
NlaIV	GGNNCC	2 cut(s)	595, 681
NmeAIII	GCCGAG	2 cut(s)	156, 339
NmuCI	GTSAC	1 cut(s)	388
PaeR7I	CTCGAG	1 cut(s)	410
PdiI	GCCGGC	3 cut(s)	148, 265, 433
PfeI	GAWTC	1 cut(s)	727
PflFI	GACNNNGTC	1 cut(s)	335
PleI	GAGTC	3 cut(s)	400, 742, 793
PpsI	GAGTC	3 cut(s)	400, 742, 793
PshBI	ATTAAT	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	665
PspGI	CCWGG	1 cut(s)	665
PspN4I	GGNNCC	2 cut(s)	595, 681
PspPI	GGNCC	3 cut(s)	169, 429, 747
PsuI	RGATCY	1 cut(s)	593
PsyI	GACNNNGTC	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	156, 456
Sau3AI	GATC	6 cut(s)	18, 252, 538, 543, 593, 720
Sau96I	GGNCC	3 cut(s)	169, 429, 747
SchI	GAGTC	3 cut(s)	400, 743, 794
ScrFI	CCNGG	1 cut(s)	667
SduI	GDGCHC	2 cut(s)	234, 557
Sfr274I	CTCGAG	1 cut(s)	410
SinI	GGWCC	2 cut(s)	169, 747
SlaI	CTCGAG	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	3 cut(s)	34, 73, 779
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	665
TaaI	ACNGT	2 cut(s)	328, 747
TaqI	TCGA	9 cut(s)	11, 182, 234, 255, 330, 411, 537, 566, 788
TasI	AATT	3 cut(s)	34, 73, 779
TfiI	GAWTC	1 cut(s)	727
Tru1I	TTAA	2 cut(s)	156, 456
Tru9I	TTAA	2 cut(s)	156, 456
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	1 cut(s)	695
Tsp45I	GTSAC	1 cut(s)	388
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	1 cut(s)	555
Tth111I	GACNNNGTC	1 cut(s)	335
VpaK11BI	GGWCC	2 cut(s)	169, 747
VspI	ATTAAT	1 cut(s)	156
XapI	RAATTY	1 cut(s)	34
XcmI	CCANNNNNNNNNTGG	1 cut(s)	673
XhoI	CTCGAG	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.