Rh3DG034400

Transcription factor UNE12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002134
Physical Location & Seq
Reverse (-)
2292163 .. 2296777
4615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG034400.1

Sequence Viewer

Length: 816 bp
ATGGCGGGCAATCCGCCTGAGGGACTCGGAGACGATTTCTTCGAGCAGATCATGGCCGTTCCTCAAACGTACAGCGGCTCCGGCTCTGCTGCTGAGTCAGCTGGTGGTGGCTATGGAGACGTGGGGTCCATGCCCATGGTGCTCCAGCTGGGCTCCGGAACCGGGTCTTCTTCTGGCTCCGGCGTCGGGTACAGAGGAGGAGTCGGGTCGGTTGGGATGGGTATGGGCTTGCCTTTGGGTCTGAATTTGGAGCAGGGGTTTCTTGGACAAGACAGGTTCAGAGATGAAGTTGAACCCAACTCTAACACCAACAACAACAACAACAACGGTAACAGTTCTAATGAAAGAGATTCGGTTCACATGACGAGTTTGTTTCCGGCATTTGGACATTTGCAAAACCACTCTGTCCGGCCAACGCCGCCGCCTCCTCAGCCTCACCAGCAGTTTCATAGCCAACCAGCACCGGGGCCAGCTGCTGCTGCCCATCACCCTCCTGCTATCCGCCCAAGGGTCCGAGCAAGACGAGGTCAAGCAACAGATCCCCACAGTATTGCCGAGCGGTTACGCCGGGAAAGAATTGCAGAAAGAATGAAGGCTTTGCAGGAATTGGTACCTAGTTGTAACAAGACAGATAGGGCAGCTATGCTTGACGAAATCGTCGATTATGTGAAATTTTTAAGGCTCCAAGTAAAGGTTTTGAGCATGAGTAGACTTGGAGGAGCAGGTGCAGTGGCTCAGCTTGTAGCTGATGTACCCTTATCAGCAGTTGAGGTAATCAAACCTGAACAATGCATCCCTAAACCTATTGTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

271

Amino Acids

28.66

Weight (kDa)

6.71

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 182 - 227 7.9e-09 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 186 - 230 3.4e-06 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 713
AasI GACNNNNNNGTC 1 cut(s) 656
Acc36I ACCTGC 1 cut(s) 713
Acc65I GGTACC 1 cut(s) 610
AccB1I GGYRCC 1 cut(s) 610
AccBSI CCGCTC 1 cut(s) 559
AccI GTMKAC 1 cut(s) 709
AccIII TCCGGA 1 cut(s) 155
AciI CCGC 7 cut(s) 5, 14, 75, 419, 422, 502, 559
AclWI GGATC 1 cut(s) 533
AcoI YGGCCR 2 cut(s) 54, 410
AcsI RAATTY 2 cut(s) 244, 671
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 4 cut(s) 71, 191, 612, 753
AfiI CCNNNNNNNGG 7 cut(s) 20, 162, 186, 383, 464, 508, 691
AgsI TTSAA 1 cut(s) 293
AhdI GACNNNNNGTC 1 cut(s) 124
AjiI CACGTC 1 cut(s) 121
AloI GAACNNNNNNTCC 2 cut(s) 777, 809
AluBI AGCT 6 cut(s) 101, 148, 473, 641, 739, 746
AluI AGCT 6 cut(s) 101, 148, 473, 641, 739, 746
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 2 cut(s) 24, 111
AlwI GGATC 1 cut(s) 533
AlwNI CAGNNNCTG 1 cut(s) 476
Aor13HI TCCGGA 1 cut(s) 155
AoxI GGCC 3 cut(s) 54, 410, 467
ApeKI GCWGC 5 cut(s) 89, 473, 476, 479, 638
ApoI RAATTY 2 cut(s) 244, 671
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
Asp718I GGTACC 1 cut(s) 610
AspS9I GGNCC 3 cut(s) 126, 467, 511
AsuC2I CCSGG 3 cut(s) 163, 465, 569
AsuHPI GGTGA 2 cut(s) 428, 479
AvaII GGWCC 2 cut(s) 126, 511
AxyI CCTNAGG 1 cut(s) 18
BanI GGYRCC 1 cut(s) 610
BanII GRGCYC 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 144
BbvCI CCTCAGC 1 cut(s) 429
BbvI GCAGC 5 cut(s) 76, 460, 463, 466, 650
BccI CCATC 2 cut(s) 211, 492
BceAI ACGGC 1 cut(s) 41
BcnI CCSGG 3 cut(s) 163, 465, 569
BcoDI GTCTC 2 cut(s) 24, 111
BfaI CTAG 1 cut(s) 615
BfuAI ACCTGC 1 cut(s) 713
BisI GCNGC 8 cut(s) 76, 90, 419, 422, 474, 477, 480, 639
BlpI GCTNAGC 1 cut(s) 735
BlsI GCNGC 8 cut(s) 77, 91, 420, 423, 475, 478, 481, 640
Bme1390I CCNGG 3 cut(s) 163, 465, 569
Bme18I GGWCC 2 cut(s) 126, 511
BmeRI GACNNNNNGTC 1 cut(s) 124
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 3 cut(s) 126, 467, 511
BmiI GGNNCC 9 cut(s) 79, 127, 154, 160, 178, 468, 512, 612, 683
BmrFI CCNGG 3 cut(s) 163, 465, 569
BmsI GCATC 1 cut(s) 801
BpiI GAAGAC 1 cut(s) 159
BpmI CTGGAG 1 cut(s) 128
Bpu10I CCTNAGC 1 cut(s) 429
Bpu1102I GCTNAGC 1 cut(s) 735
BpuMI CCSGG 3 cut(s) 163, 465, 569
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 3 cut(s) 135, 464, 506
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 242, 272
Bsc4I CCNNNNNNNGG 7 cut(s) 20, 162, 186, 383, 464, 508, 691
Bse21I CCTNAGG 1 cut(s) 18
BseAI TCCGGA 1 cut(s) 155
BseDI CCNNGG 3 cut(s) 135, 464, 506
BseGI GGATG 2 cut(s) 222, 792
BseLI CCNNNNNNNGG 7 cut(s) 20, 162, 186, 383, 464, 508, 691
BseMII CTCAG 4 cut(s) 9, 84, 443, 749
BseRI GAGGAG 4 cut(s) 210, 213, 417, 732
BseXI GCAGC 5 cut(s) 76, 460, 463, 466, 650
BseYI CCCAGC 1 cut(s) 148
BsgI GTGCAG 1 cut(s) 747
BshFI GGCC 3 cut(s) 56, 412, 469
BshNI GGYRCC 1 cut(s) 610
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 8 cut(s) 81, 156, 162, 180, 377, 409, 464, 568
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 7 cut(s) 20, 162, 186, 383, 464, 508, 691
BsmAI GTCTC 2 cut(s) 24, 111
BsmBI CGTCTC 2 cut(s) 24, 111
BsmFI GGGAC 1 cut(s) 36
BsnI GGCC 3 cut(s) 56, 412, 469
Bsp1286I GDGCHC 2 cut(s) 144, 155
Bsp13I TCCGGA 1 cut(s) 155
Bsp143I GATC 2 cut(s) 48, 538
Bsp1720I GCTNAGC 1 cut(s) 735
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 7 cut(s) 5, 14, 75, 419, 422, 502, 559
BspANI GGCC 3 cut(s) 56, 412, 469
BspCNI CTCAG 4 cut(s) 10, 85, 442, 748
BspEI TCCGGA 1 cut(s) 155
BspLI GGNNCC 9 cut(s) 79, 127, 154, 160, 178, 468, 512, 612, 683
BspMI ACCTGC 1 cut(s) 713
BspPI GGATC 1 cut(s) 533
BspT107I GGYRCC 1 cut(s) 610
BsrBI CCGCTC 1 cut(s) 559
BssECI CCNNGG 3 cut(s) 135, 464, 506
BssMI GATC 2 cut(s) 48, 538
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 2 cut(s) 135, 506
Bst4CI ACNGT 3 cut(s) 329, 335, 548
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 3 cut(s) 7, 230, 471
BstDEI CTNAG 4 cut(s) 18, 93, 429, 735
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 2 cut(s) 222, 792
BstKTI GATC 2 cut(s) 51, 541
BstMAI GTCTC 2 cut(s) 24, 111
BstMBI GATC 2 cut(s) 48, 538
BstMWI GCNNNNNNNGC 7 cut(s) 81, 98, 139, 418, 430, 439, 479
BstSCI CCNGG 3 cut(s) 161, 463, 567
BstV1I GCAGC 5 cut(s) 76, 460, 463, 466, 650
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 538
BstXI CCANNNNNNTGG 1 cut(s) 136
BstYI RGATCY 1 cut(s) 538
Bsu36I CCTNAGG 1 cut(s) 18
BsuRI GGCC 3 cut(s) 56, 412, 469
BtgI CCRYGG 1 cut(s) 135
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 2 cut(s) 222, 792
BtsI GCAGTG 1 cut(s) 735
BtsIMutI CAGTG 1 cut(s) 735
BveI ACCTGC 1 cut(s) 713
Cac8I GCNNGC 3 cut(s) 7, 230, 471
CaiI CAGNNNCTG 1 cut(s) 476
Cfr13I GGNCC 3 cut(s) 126, 467, 511
CseI GACGC 1 cut(s) 172
Csp6I GTAC 4 cut(s) 70, 190, 611, 752
CviAII CATG 5 cut(s) 52, 130, 136, 361, 703
CviQI GTAC 4 cut(s) 70, 190, 611, 752
DdeI CTNAG 4 cut(s) 18, 93, 429, 735
DpnI GATC 2 cut(s) 50, 540
DpnII GATC 2 cut(s) 48, 538
DrdI GACNNNNNNGTC 1 cut(s) 656
DriI GACNNNNNGTC 1 cut(s) 124
DseDI GACNNNNNNGTC 1 cut(s) 656
EaeI YGGCCR 2 cut(s) 54, 410
Eam1105I GACNNNNNGTC 1 cut(s) 124
EciI GGCGGA 1 cut(s) 491
Eco130I CCWWGG 2 cut(s) 135, 506
Eco24I GRGCYC 1 cut(s) 155
Eco47I GGWCC 2 cut(s) 126, 511
Eco81I CCTNAGG 1 cut(s) 18
EcoT14I CCWWGG 2 cut(s) 135, 506
EcoT22I ATGCAT 1 cut(s) 794
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 2 cut(s) 135, 506
Esp3I CGTCTC 2 cut(s) 24, 111
FaeI CATG 5 cut(s) 55, 133, 139, 364, 706
FaqI GGGAC 1 cut(s) 36
FatI CATG 5 cut(s) 51, 129, 135, 360, 702
FblI GTMKAC 1 cut(s) 709
Fnu4HI GCNGC 8 cut(s) 76, 90, 419, 422, 474, 477, 480, 639
FokI GGATG 2 cut(s) 229, 779
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 8 cut(s) 76, 90, 419, 422, 474, 477, 480, 639
FspBI CTAG 1 cut(s) 615
GluI GCNGC 8 cut(s) 76, 90, 419, 422, 474, 477, 480, 639
GsaI CCCAGC 1 cut(s) 152
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 3 cut(s) 56, 412, 469
HapII CCGG 8 cut(s) 81, 156, 162, 180, 377, 409, 464, 568
HgaI GACGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 5 cut(s) 55, 133, 139, 364, 706
HinfI GANTC 4 cut(s) 24, 95, 201, 350
HpaII CCGG 8 cut(s) 81, 156, 162, 180, 377, 409, 464, 568
HphI GGTGA 2 cut(s) 428, 479
Hpy166II GTNNAC 2 cut(s) 358, 710
Hpy188I TCNGA 4 cut(s) 29, 243, 281, 515
Hpy188III TCNNGA 1 cut(s) 156
Hpy8I GTNNAC 2 cut(s) 358, 710
Hpy99I CGWCG 2 cut(s) 188, 662
HpyAV CCTTC 1 cut(s) 586
HpyCH4III ACNGT 3 cut(s) 329, 335, 548
HpyCH4IV ACGT 2 cut(s) 68, 120
HpyCH4V TGCA 5 cut(s) 394, 581, 601, 728, 792
HpyF10VI GCNNNNNNNGC 7 cut(s) 81, 98, 139, 418, 430, 439, 479
HpyF3I CTNAG 4 cut(s) 18, 93, 429, 735
HpySE526I ACGT 2 cut(s) 68, 120
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 5 cut(s) 55, 133, 139, 364, 706
Kpn2I TCCGGA 1 cut(s) 155
KpnI GGTACC 1 cut(s) 614
Kzo9I GATC 2 cut(s) 48, 538
LmnI GCTCC 7 cut(s) 83, 147, 158, 182, 250, 687, 719
Lsp1109I GCAGC 5 cut(s) 76, 460, 463, 466, 650
LweI GCATC 1 cut(s) 801
MaeI CTAG 1 cut(s) 615
MaeII ACGT 2 cut(s) 68, 120
MaeIII GTNAC 4 cut(s) 329, 561, 620, 808
MalI GATC 2 cut(s) 50, 540
MbiI CCGCTC 1 cut(s) 559
MboI GATC 2 cut(s) 48, 538
MboII GAAGA 3 cut(s) 31, 159, 162
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 2 cut(s) 144, 155
MluCI AATT 4 cut(s) 244, 576, 605, 671
MlyI GAGTC 3 cut(s) 18, 104, 210
Mph1103I ATGCAT 1 cut(s) 794
MroI TCCGGA 1 cut(s) 155
MseI TTAA 1 cut(s) 677
MslI CAYNNNNRTG 1 cut(s) 134
MspA1I CMGCKG 4 cut(s) 75, 101, 148, 473
MspI CCGG 8 cut(s) 81, 156, 162, 180, 377, 409, 464, 568
MspR9I CCNGG 3 cut(s) 163, 465, 569
MwoI GCNNNNNNNGC 7 cut(s) 81, 98, 139, 418, 430, 439, 479
NciI CCSGG 3 cut(s) 163, 465, 569
NcoI CCATGG 1 cut(s) 135
NdeII GATC 2 cut(s) 48, 538
NlaIII CATG 5 cut(s) 55, 133, 139, 364, 706
NlaIV GGNNCC 9 cut(s) 79, 127, 154, 160, 178, 468, 512, 612, 683
NmeAIII GCCGAG 1 cut(s) 580
NsiI ATGCAT 1 cut(s) 794
PaqCI CACCTGC 1 cut(s) 713
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 657
PfeI GAWTC 1 cut(s) 350
PflFI GACNNNGTC 1 cut(s) 525
PkrI GCNGC 8 cut(s) 77, 91, 420, 423, 475, 478, 481, 640
PleI GAGTC 3 cut(s) 18, 103, 209
PpsI GAGTC 3 cut(s) 18, 103, 209
PspFI CCCAGC 1 cut(s) 148
PspN4I GGNNCC 9 cut(s) 79, 127, 154, 160, 178, 468, 512, 612, 683
PspPI GGNCC 3 cut(s) 126, 467, 511
PstNI CAGNNNCTG 1 cut(s) 476
PsuI RGATCY 1 cut(s) 538
PsyI GACNNNGTC 1 cut(s) 525
PvuII CAGCTG 3 cut(s) 101, 148, 473
RsaI GTAC 4 cut(s) 71, 191, 612, 753
RsaNI GTAC 4 cut(s) 70, 190, 611, 752
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 1 cut(s) 677
SatI GCNGC 8 cut(s) 76, 90, 419, 422, 474, 477, 480, 639
Sau3AI GATC 2 cut(s) 48, 538
Sau96I GGNCC 3 cut(s) 126, 467, 511
SchI GAGTC 3 cut(s) 18, 104, 210
ScrFI CCNGG 3 cut(s) 163, 465, 569
SduI GDGCHC 2 cut(s) 144, 155
SfaNI GCATC 1 cut(s) 801
SinI GGWCC 2 cut(s) 126, 511
SmiMI CAYNNNNRTG 1 cut(s) 134
Sse9I AATT 4 cut(s) 244, 576, 605, 671
SsiI CCGC 7 cut(s) 5, 14, 75, 419, 422, 502, 559
SspMI CTAG 1 cut(s) 615
StyD4I CCNGG 3 cut(s) 161, 463, 567
StyI CCWWGG 2 cut(s) 135, 506
TaaI ACNGT 3 cut(s) 329, 335, 548
TaiI ACGT 2 cut(s) 71, 123
TaqI TCGA 2 cut(s) 42, 660
TasI AATT 4 cut(s) 244, 576, 605, 671
TauI GCSGC 3 cut(s) 78, 421, 424
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 1 cut(s) 677
Tru9I TTAA 1 cut(s) 677
TscAI CASTG 1 cut(s) 735
TseI GCWGC 5 cut(s) 89, 473, 476, 479, 638
TspDTI ATGAA 4 cut(s) 300, 357, 437, 605
TspRI CASTG 1 cut(s) 735
Tth111I GACNNNGTC 1 cut(s) 525
VpaK11BI GGWCC 2 cut(s) 126, 511
XapI RAATTY 2 cut(s) 244, 671
XmiI GTMKAC 1 cut(s) 709
XspI CTAG 1 cut(s) 615
Zsp2I ATGCAT 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.