pycom10g16690

transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
19847329 .. 19851041
3713 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g16690.2

Sequence Viewer

Length: 1194 bp
ATGGTACAGAAAGGTAAATTTTGCAAAAAGCAGCCCCTTTTACAGAAATGCAACATTTTTAACCAGATAAAGCCACCATCACCTTTTGTCTCTGCGCTCACTCCGTGTCCGAGCAGGCAAAAAAACAAAAGCTCAAAGCAAAAAATTCAAAAGCTCTCTCAAAGCCCAAAGCTCAAAGCTTTCCTTTTCCATTTCTCTCTGTTGCATGTAGCTGCTCTCTTCATAAACCCTAACTCGCTTCCCACCGACTCACCTCGACTCGGCCTTACTCGCTTACTACCTCCTCCTTTTCCTCCCATGGCCAACAACCCCTCGGAGGCCCAGGCCGACGATTTCCTCGAGCAAATTCTCGGCCTTCAGAACTTCGCTTCCGCCGATGCTAATTTGGCGCGAAGCGATGGGGGTTTGGCCGGAGGTCAAGTGTCTCAGGCGTCGATGATGCTGCAGCTGAACTCCGGCAACGGCTCAGGCCACATAGGCGGCGGCGGTGGGGGGTTCCATGGAGGGGTGTTTCCGTTGGGGTTGAGCTTGGAGCAGGGGAAAGCTGGGTTTTTGAAGCACGAGGAGGCTTCTGGGAGCGGGAAGCGGTTCCAAGACGATGTCGTTGATAGTCGAGGCTCATCTGTGAAAAATGTTTTCCATGGCCAACCAATCTCAAATACAGTTGCTGCAGCACCGCATCCACCAGCAATGCGACCAAGGGTGCGAGCTAGAAGAGGACAAGCCACCGATCCACACAGCATTGCCGAGCGGTTGCGCCGAGAAAGAATAGCAGAAAGAATCAGAGCATTGCAGGAACTAGTTCCTAGCGTCAATAAGACGGATAGAGCTGCCATGCTTGATGAGATAATGGATTACGTGAAGTTCCTAAGGCTCCAAGTAAAGGTTTTGAGCATGAGTAGATTGGGCGGAGCTGGTGCTGTGGCACCACTTGTAACGGACATTCCACTATCTTCCGTTGAGGAAGAAGGCGGCGAAGGTGGTAGAAACCAACCGGCGTGGGATAAGTGGTCTAATGATGGCACAGAACGACAAGTAGCTAAGCTTATGGAAGAAAACGTTGGGGCTGCAATGCAGTTCCTCCAATCAAAGGCTCTCTGCATCATGCCCATCTCACTGGCCTCAGCAATTTACCACACGCAATCACCGGACACCTCTAGCGTTGTCAAGCCTGAAATGAACCCTCCTTCCTAA

Protein Analysis

398

Amino Acids

42.75

Weight (kDa)

9.62

Isoelectric Point (pI)

54.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 925
AccBSI CCGCTC 2 cut(s) 579, 751
AccII CGCG 1 cut(s) 391
AclI AACGTT 1 cut(s) 1059
AclWI GGATC 1 cut(s) 725
AcoI YGGCCR 3 cut(s) 300, 408, 643
AcsI RAATTY 3 cut(s) 17, 144, 345
AcuI CTGAAG 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 431
AdeI CACNNNGTG 1 cut(s) 105
AfaI GTAC 1 cut(s) 6
AfiI CCNNNNNNNGG 5 cut(s) 260, 316, 505, 883, 1090
AgsI TTSAA 2 cut(s) 149, 556
AhlI ACTAGT 1 cut(s) 799
AjnI CCWGG 1 cut(s) 321
AjuI GAANNNNNNNTTGG 2 cut(s) 1044, 1076
AloI GAACNNNNNNTCC 3 cut(s) 353, 385, 1172
Alw26I GTCTC 2 cut(s) 94, 429
AlwI GGATC 1 cut(s) 725
AlwNI CAGNNNCTG 1 cut(s) 668
Ama87I CYCGRG 1 cut(s) 338
AoxI GGCC 9 cut(s) 262, 300, 318, 324, 352, 408, 469, 643, 1119
ApeKI GCWGC 8 cut(s) 31, 212, 442, 445, 668, 671, 830, 1067
ApoI RAATTY 3 cut(s) 17, 144, 345
Asp700I GAANNNNTTC 2 cut(s) 587, 801
AspLEI GCGC 3 cut(s) 97, 391, 759
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 3 cut(s) 72, 243, 1137
AvaI CYCGRG 1 cut(s) 338
AxyI CCTNAGG 1 cut(s) 869
BalI TGGCCA 2 cut(s) 302, 645
BanI GGYRCC 1 cut(s) 925
BauI CACGAG 1 cut(s) 560
BbvCI CCTCAGC 1 cut(s) 1123
BbvI GCAGC 8 cut(s) 43, 199, 429, 457, 655, 683, 817, 1054
BccI CCATC 4 cut(s) 85, 392, 1013, 1118
BceAI ACGGC 1 cut(s) 478
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BciT130I CCWGG 1 cut(s) 323
BcoDI GTCTC 2 cut(s) 94, 429
BcuI ACTAGT 1 cut(s) 799
BfaI CTAG 4 cut(s) 711, 800, 807, 1158
BfmI CTRYAG 2 cut(s) 443, 669
BglI GCCNNNNNGGC 1 cut(s) 477
BlpI GCTNAGC 1 cut(s) 1041
Bme1390I CCNGG 1 cut(s) 323
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 4 cut(s) 497, 590, 875, 927
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 4 cut(s) 367, 429, 688, 1110
Bpu10I CCTNAGC 2 cut(s) 466, 1123
Bpu1102I GCTNAGC 1 cut(s) 1041
BsaAI YACGTR 1 cut(s) 859
BsaHI GRCGYC 1 cut(s) 431
BsaJI CCNNGG 6 cut(s) 297, 312, 321, 499, 640, 698
BsaWI WCCGGW 1 cut(s) 1147
BsaXI ACNNNNNCTCC 2 cut(s) 405, 435
Bsc4I CCNNNNNNNGG 5 cut(s) 260, 316, 505, 883, 1090
Bse118I RCCGGY 1 cut(s) 994
Bse1I ACTGG 1 cut(s) 1122
Bse21I CCTNAGG 1 cut(s) 869
Bse3DI GCAATG 4 cut(s) 696, 741, 788, 1077
BseBI CCWGG 1 cut(s) 323
BseDI CCNNGG 6 cut(s) 297, 312, 321, 499, 640, 698
BseGI GGATG 1 cut(s) 679
BseLI CCNNNNNNNGG 5 cut(s) 260, 316, 505, 883, 1090
BseMI GCAATG 4 cut(s) 696, 741, 788, 1077
BseMII CTCAG 3 cut(s) 440, 480, 1137
BseNI ACTGG 1 cut(s) 1122
BseRI GAGGAG 2 cut(s) 273, 578
BseXI GCAGC 8 cut(s) 43, 199, 429, 457, 655, 683, 817, 1054
BseYI CCCAGC 1 cut(s) 545
Bsh1236I CGCG 1 cut(s) 391
BshFI GGCC 9 cut(s) 264, 302, 320, 326, 354, 410, 471, 645, 1121
BshNI GGYRCC 1 cut(s) 925
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 4 cut(s) 411, 456, 995, 1148
BslI CCNNNNNNNGG 5 cut(s) 260, 316, 505, 883, 1090
BsmAI GTCTC 2 cut(s) 94, 429
BsnI GGCC 9 cut(s) 264, 302, 320, 326, 354, 410, 471, 645, 1121
BsoBI CYCGRG 1 cut(s) 338
Bsp143I GATC 1 cut(s) 730
Bsp1720I GCTNAGC 1 cut(s) 1041
Bsp19I CCATGG 3 cut(s) 297, 499, 640
BspANI GGCC 9 cut(s) 264, 302, 320, 326, 354, 410, 471, 645, 1121
BspCNI CTCAG 3 cut(s) 439, 479, 1136
BspFNI CGCG 1 cut(s) 391
BspLI GGNNCC 4 cut(s) 497, 590, 875, 927
BspMAI CTGCAG 2 cut(s) 447, 673
BspPI GGATC 1 cut(s) 725
BspT107I GGYRCC 1 cut(s) 925
BsrBI CCGCTC 2 cut(s) 579, 751
BsrDI GCAATG 4 cut(s) 696, 741, 788, 1077
BsrFI RCCGGY 1 cut(s) 994
BsrI ACTGG 1 cut(s) 1122
BssAI RCCGGY 1 cut(s) 994
BssECI CCNNGG 6 cut(s) 297, 312, 321, 499, 640, 698
BssMI GATC 1 cut(s) 730
BssNI GRCGYC 1 cut(s) 431
BssSI CACGAG 1 cut(s) 560
BssT1I CCWWGG 4 cut(s) 297, 499, 640, 698
Bst2BI CACGAG 1 cut(s) 560
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 1 cut(s) 664
Bst6I CTCTTC 2 cut(s) 224, 709
BstACI GRCGYC 1 cut(s) 431
BstBAI YACGTR 1 cut(s) 859
BstC8I GCNNGC 2 cut(s) 116, 708
BstDEI CTNAG 5 cut(s) 426, 466, 869, 1041, 1123
BstDSI CCRYGG 3 cut(s) 297, 499, 640
BstF5I GGATG 1 cut(s) 679
BstFNI CGCG 1 cut(s) 391
BstHHI GCGC 3 cut(s) 97, 391, 759
BstKTI GATC 1 cut(s) 733
BstMAI GTCTC 2 cut(s) 94, 429
BstMBI GATC 1 cut(s) 730
BstMWI GCNNNNNNNGC 3 cut(s) 270, 386, 477
BstNI CCWGG 1 cut(s) 323
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 321
BstSFI CTRYAG 2 cut(s) 443, 669
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 8 cut(s) 43, 199, 429, 457, 655, 683, 817, 1054
BstXI CCANNNNNNTGG 1 cut(s) 1117
Bsu36I CCTNAGG 1 cut(s) 869
BsuRI GGCC 9 cut(s) 264, 302, 320, 326, 354, 410, 471, 645, 1121
BtgI CCRYGG 3 cut(s) 297, 499, 640
BtgZI GCGATG 1 cut(s) 411
BtsCI GGATG 1 cut(s) 679
BtsIMutI CAGTG 1 cut(s) 1115
Cac8I GCNNGC 2 cut(s) 116, 708
CaiI CAGNNNCTG 1 cut(s) 668
CfoI GCGC 3 cut(s) 97, 391, 759
Cfr10I RCCGGY 1 cut(s) 994
Cfr13I GGNCC 1 cut(s) 319
CseI GACGC 2 cut(s) 420, 799
Csp6I GTAC 1 cut(s) 5
CspCI CAANNNNNGTGG 2 cut(s) 980, 1015
CviAII CATG 7 cut(s) 206, 298, 500, 641, 835, 895, 1105
CviQI GTAC 1 cut(s) 5
DdeI CTNAG 5 cut(s) 426, 466, 869, 1041, 1123
DpnI GATC 1 cut(s) 732
DpnII GATC 1 cut(s) 730
DraIII CACNNNGTG 1 cut(s) 105
EaeI YGGCCR 3 cut(s) 300, 408, 643
Eam1104I CTCTTC 2 cut(s) 224, 709
EarI CTCTTC 2 cut(s) 224, 709
EciI GGCGGA 2 cut(s) 361, 924
Eco130I CCWWGG 4 cut(s) 297, 499, 640, 698
Eco57I CTGAAG 1 cut(s) 341
Eco81I CCTNAGG 1 cut(s) 869
Eco88I CYCGRG 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 321
EcoT14I CCWWGG 4 cut(s) 297, 499, 640, 698
ErhI CCWWGG 4 cut(s) 297, 499, 640, 698
FaeI CATG 7 cut(s) 209, 301, 503, 644, 838, 898, 1108
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FatI CATG 7 cut(s) 205, 297, 499, 640, 834, 894, 1104
FauI CCCGC 1 cut(s) 572
FokI GGATG 1 cut(s) 666
FspBI CTAG 4 cut(s) 711, 800, 807, 1158
GlaI GCGC 3 cut(s) 96, 390, 758
GsaI CCCAGC 1 cut(s) 549
HaeIII GGCC 9 cut(s) 264, 302, 320, 326, 354, 410, 471, 645, 1121
HapII CCGG 4 cut(s) 411, 456, 995, 1148
HgaI GACGC 2 cut(s) 420, 799
HhaI GCGC 3 cut(s) 97, 391, 759
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 7 cut(s) 209, 301, 503, 644, 838, 898, 1108
Hin6I GCGC 3 cut(s) 95, 389, 757
HinP1I GCGC 3 cut(s) 95, 389, 757
HindIII AAGCTT 2 cut(s) 177, 1043
HinfI GANTC 3 cut(s) 248, 258, 780
HpaII CCGG 4 cut(s) 411, 456, 995, 1148
HphI GGTGA 3 cut(s) 72, 243, 1137
Hpy188I TCNGA 4 cut(s) 111, 316, 360, 785
Hpy99I CGWCG 2 cut(s) 332, 436
HpyAV CCTTC 3 cut(s) 365, 962, 971
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4IV ACGT 2 cut(s) 858, 1059
HpyCH4V TGCA 9 cut(s) 24, 51, 205, 445, 671, 793, 1070, 1075, 1101
HpyF10VI GCNNNNNNNGC 3 cut(s) 270, 386, 477
HpyF3I CTNAG 5 cut(s) 426, 466, 869, 1041, 1123
HpySE526I ACGT 2 cut(s) 858, 1059
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 7 cut(s) 209, 301, 503, 644, 838, 898, 1108
HspAI GCGC 3 cut(s) 95, 389, 757
Kzo9I GATC 1 cut(s) 730
LmnI GCTCC 4 cut(s) 532, 576, 879, 911
Lsp1109I GCAGC 8 cut(s) 43, 199, 429, 457, 655, 683, 817, 1054
LweI GCATC 4 cut(s) 367, 429, 688, 1110
MaeI CTAG 4 cut(s) 711, 800, 807, 1158
MaeII ACGT 2 cut(s) 858, 1059
MaeIII GTNAC 1 cut(s) 934
MalI GATC 1 cut(s) 732
MbiI CCGCTC 2 cut(s) 579, 751
MboI GATC 1 cut(s) 730
MboII GAAGA 5 cut(s) 211, 726, 945, 977, 1064
MlsI TGGCCA 2 cut(s) 302, 645
MluCI AATT 5 cut(s) 17, 144, 345, 382, 1128
MluNI TGGCCA 2 cut(s) 302, 645
MlyI GAGTC 2 cut(s) 242, 252
Mox20I TGGCCA 2 cut(s) 302, 645
MroXI GAANNNNTTC 2 cut(s) 587, 801
MscI TGGCCA 2 cut(s) 302, 645
MseI TTAA 1 cut(s) 60
Msp20I TGGCCA 2 cut(s) 302, 645
MspA1I CMGCKG 1 cut(s) 448
MspI CCGG 4 cut(s) 411, 456, 995, 1148
MspR9I CCNGG 1 cut(s) 323
MvaI CCWGG 1 cut(s) 323
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 3 cut(s) 270, 386, 477
NcoI CCATGG 3 cut(s) 297, 499, 640
NdeII GATC 1 cut(s) 730
NlaIII CATG 7 cut(s) 209, 301, 503, 644, 838, 898, 1108
NlaIV GGNNCC 4 cut(s) 497, 590, 875, 927
NmeAIII GCCGAG 4 cut(s) 240, 330, 772, 785
NspI RCATGY 1 cut(s) 209
PaeR7I CTCGAG 1 cut(s) 338
PcsI WCGNNNNNNNCGW 2 cut(s) 336, 372
PdmI GAANNNNTTC 2 cut(s) 587, 801
PfeI GAWTC 1 cut(s) 780
PflFI GACNNNGTC 1 cut(s) 599
PleI GAGTC 2 cut(s) 242, 252
PpsI GAGTC 2 cut(s) 242, 252
Ppu21I YACGTR 1 cut(s) 859
Psp1406I AACGTT 1 cut(s) 1059
Psp6I CCWGG 1 cut(s) 321
PspFI CCCAGC 1 cut(s) 545
PspGI CCWGG 1 cut(s) 321
PspN4I GGNNCC 4 cut(s) 497, 590, 875, 927
PspPI GGNCC 1 cut(s) 319
PspXI VCTCGAGB 1 cut(s) 338
PstI CTGCAG 2 cut(s) 447, 673
PstNI CAGNNNCTG 1 cut(s) 668
PsyI GACNNNGTC 1 cut(s) 599
PvuII CAGCTG 1 cut(s) 448
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
SaqAI TTAA 1 cut(s) 60
Sau3AI GATC 1 cut(s) 730
Sau96I GGNCC 1 cut(s) 319
SchI GAGTC 2 cut(s) 242, 252
ScrFI CCNGG 1 cut(s) 323
SfaNI GCATC 4 cut(s) 367, 429, 688, 1110
SfcI CTRYAG 2 cut(s) 443, 669
Sfr274I CTCGAG 1 cut(s) 338
SlaI CTCGAG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
SpeI ACTAGT 1 cut(s) 799
Sse9I AATT 5 cut(s) 17, 144, 345, 382, 1128
SspMI CTAG 4 cut(s) 711, 800, 807, 1158
StyD4I CCNGG 1 cut(s) 321
StyI CCWWGG 4 cut(s) 297, 499, 640, 698
TaaI ACNGT 1 cut(s) 664
TaiI ACGT 2 cut(s) 861, 1062
TaqI TCGA 4 cut(s) 256, 339, 434, 613
TasI AATT 5 cut(s) 17, 144, 345, 382, 1128
TauI GCSGC 3 cut(s) 483, 486, 975
TfiI GAWTC 1 cut(s) 780
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 1 cut(s) 1122
TseI GCWGC 8 cut(s) 31, 212, 442, 445, 668, 671, 830, 1067
TspDTI ATGAA 2 cut(s) 211, 1193
TspGWI ACGGA 5 cut(s) 93, 504, 836, 946, 953
TspRI CASTG 1 cut(s) 1122
Tth111I GACNNNGTC 1 cut(s) 599
XapI RAATTY 3 cut(s) 17, 144, 345
XceI RCATGY 1 cut(s) 209
XhoI CTCGAG 1 cut(s) 338
XmnI GAANNNNTTC 2 cut(s) 587, 801
XspI CTAG 4 cut(s) 711, 800, 807, 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.